View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3375_low_6 (Length: 527)
Name: NF3375_low_6
Description: NF3375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3375_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 472; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 19 - 514
Target Start/End: Complemental strand, 30564667 - 30564172
Alignment:
| Q |
19 |
tgtgtagtaaatgcaaaatggtcgtaacaggaatttggttactgttgtaacatttagtgatttttgtgtgatcttgtggtaggtatccaaacatctaatg |
118 |
Q |
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| T |
30564667 |
tgtgtagtaaatgcaaaatggtagtaacaggaatttggttgctgttgtaacatttagtgatttttgtgtgatcttgtggtaggtatccaaacatctaatg |
30564568 |
T |
|
| Q |
119 |
atgccaaacattttgccatctctgcaaagataccagaattcagtaacaagaacagaacactagtcttccagtattctataaaatttgaacaagagattga |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30564567 |
atgccaaacattttgccatctctgcaaagataccagaattcagtaacaagaacagaacactagtcttccagtattctataaaatttgaacaagagattga |
30564468 |
T |
|
| Q |
219 |
gtgtggtggaggttacatgaagctcctctctggatttgttaatcagaaaaaatttggtggggatacgccgtataggtgtgttgcttattccattttcttc |
318 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30564467 |
gtgtggtggaggttatatgaagctcctctctggatttgttaatcagaaaaaatttggtggggatacgccgtataggtgtgttgcttattccattttcttc |
30564368 |
T |
|
| Q |
319 |
acttagtttttgattcttgatttcataacgtgaacaaatagttcatctgcaacctcgcaaagtggcctctactttaatattgattgagttttctttatgt |
418 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
30564367 |
acttagtttttgattcttgatttcataacgtgcacaaatagttcatctgcaacctcgcaaagtggcctctactttaatattgatcaagttttctttatgt |
30564268 |
T |
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| Q |
419 |
cctcgtttgtattagtgacgttcaaaagctaactaaactaatggaatacaaactctcattgtttttctcttccatatccatgctgttgttcttctc |
514 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30564267 |
cctcgtttgtattagtgacgttcaaaagctaactaaactaatggaatacaaactctcattgtttttctcttccatatccatgctgttgttcttctc |
30564172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 99 - 295
Target Start/End: Complemental strand, 25487424 - 25487228
Alignment:
| Q |
99 |
aggtatccaaacatctaatgatgccaaacattttgccatctctgcaaagataccagaattcagtaacaagaacagaacactagtcttccagtattctata |
198 |
Q |
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|||||| || |||| |||||||||||| ||||||||||| ||||||||||||||||| || | || ||||||||||| || || | ||||||||||| |
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| T |
25487424 |
aggtattcagacatataatgatgccaagcattttgccatatctgcaaagataccagagttgaccaataagaacagaaccctggtgcttcagtattctatt |
25487325 |
T |
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| Q |
199 |
aaatttgaacaagagattgagtgtggtggaggttacatgaagctcctctctggatttgttaatcagaaaaaatttggtggggatacgccgtataggt |
295 |
Q |
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||||||||||| || |||||||||||||| |||||||| || || || ||||| | ||| |||||||| |||||||| || ||||| || ||||||| |
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| T |
25487324 |
aaatttgaacaggatattgagtgtggtggtggttacatcaaacttctttctggttatgtcaatcagaagaaatttggcggtgatactccttataggt |
25487228 |
T |
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