View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3375_low_8 (Length: 403)
Name: NF3375_low_8
Description: NF3375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3375_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 270; Significance: 1e-151; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 18 - 299
Target Start/End: Original strand, 29750950 - 29751231
Alignment:
| Q |
18 |
cttgtatctgcatatgcaaaccaattacacacaattccatcctaaacaaaaacacatcaccaacataaactccaggtatcggtccaactatcctcttatc |
117 |
Q |
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| T |
29750950 |
cttgtatctgcatatgcaaaccaattacacacaattccatcctaaacaaaaacacatcaccaacataaactccaggtatcggtccaactatcctcttatc |
29751049 |
T |
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| Q |
118 |
gcgatacagccacaattcacgcttcctcattaacgcagcagccctcatatcaccccgaatgcgattacgaccacgacgccttcttccattcgacatctcc |
217 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
29751050 |
gcgatacagccacaactcacgcttcctcattaacgcagcagccctcatatcaccacgaatgcgattacgaccacgacgccttcttccactcgacatctcc |
29751149 |
T |
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| Q |
218 |
ccttccaaccctgcagctgccaccctactctcctcaccgactctcatctctgcctccataaccgcaacttcagcagccaaca |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29751150 |
ccttccaaccctgcagctgccaccctactctcctcaccgactctcatctctgcctccataaccgcaacttcagcagccaaca |
29751231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 26 - 297
Target Start/End: Complemental strand, 30126487 - 30126216
Alignment:
| Q |
26 |
tgcatatgcaaaccaattacacacaattccatcctaaacaaaaacacatcaccaacataaactccaggtatcggtccaactatcctcttatcgcgataca |
125 |
Q |
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|||||||| |||||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| | ||| |||||| |
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| T |
30126487 |
tgcatatgtaaaccagttacacacaattccatcctaaacataaacacatcaccaacataaattccaggtatcggtccaactatcctttgatcatgataca |
30126388 |
T |
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| Q |
126 |
gccacaattcacgcttcctcattaacgcagcagccctcatatcaccccgaatgcgattacgaccacgacgccttcttccattcgacatctccccttccaa |
225 |
Q |
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| T |
30126387 |
accataacccacactccttcattaatgttgcagccgtcatatagccatgaatttggttgcgactacgacgccttattccattaattgtctccccctccac |
30126288 |
T |
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| Q |
226 |
ccctgcagctgccaccctactctcctcaccgactctcatctctgcctccataaccgcaacttcagcagccaa |
297 |
Q |
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|| | ||| |||||||| |||||||||| ||||||||||||||||||| ||| |||||||| ||| |||| |
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| T |
30126287 |
cctggtagccaccaccctattctcctcacccactctcatctctgcctccacaactgcaacttctgcatccaa |
30126216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 18 - 125
Target Start/End: Original strand, 29754538 - 29754645
Alignment:
| Q |
18 |
cttgtatctgcatatgcaaaccaattacacacaattccatcctaaacaaaaacacatcaccaacataaactccaggtatcggtccaactatcctcttatc |
117 |
Q |
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||||||||||||||||||||||||||||||| ||||||| | || |||| || |||||||||||||||||||||||||||| ||||||||||| ||||| |
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| T |
29754538 |
cttgtatctgcatatgcaaaccaattacacataattccaccatatacaagaaaacatcaccaacataaactccaggtatcgaaccaactatccttttatc |
29754637 |
T |
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| Q |
118 |
gcgataca |
125 |
Q |
| |
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|||||||| |
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| T |
29754638 |
gcgataca |
29754645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 350 - 403
Target Start/End: Original strand, 29751282 - 29751335
Alignment:
| Q |
350 |
acagcaacttcagcagccaatttcctctcatcagccattctctgctcctcctca |
403 |
Q |
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| T |
29751282 |
acagcaacttcagcagccaatttcctctcatcagccattctcttctcctcctca |
29751335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 35 - 133
Target Start/End: Complemental strand, 12858971 - 12858873
Alignment:
| Q |
35 |
aaaccaattacacacaattccatcctaaacaaaaacacatcaccaacataaactccaggtatcggtccaactatcctcttatcgcgatacagccacaat |
133 |
Q |
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||||||| |||||||| ||||||||| |||||||||||||||| | | ||| ||||| |||| ||||| |||||||||||||||| |||||||||| |
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| T |
12858971 |
aaaccaacaacacacaactccatcctatacaaaaacacatcaccgatacaaatcccaggaatcgcgccaacaatcctcttatcgcgattcagccacaat |
12858873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 35 - 133
Target Start/End: Complemental strand, 12846819 - 12846721
Alignment:
| Q |
35 |
aaaccaattacacacaattccatcctaaacaaaaacacatcaccaacataaactccaggtatcggtccaactatcctcttatcgcgatacagccacaat |
133 |
Q |
| |
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||||||| |||||||| ||||||||| |||||||||||||||||| | ||| || || |||| ||||| ||||||||||||| || |||||||||| |
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| T |
12846819 |
aaaccaaccacacacaactccatcctatacaaaaacacatcaccaatacaaatcccgggaatcgcgccaacaatcctcttatcgcaattcagccacaat |
12846721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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