View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3375_low_9 (Length: 403)
Name: NF3375_low_9
Description: NF3375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3375_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 11 - 390
Target Start/End: Complemental strand, 10639818 - 10639438
Alignment:
| Q |
11 |
cagagaattgg-caaggcaacttgataacgtttggctgagaatggattaagccgcattaagcatattattgaggaaaaaatgttgtaccattcttgtacc |
109 |
Q |
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| T |
10639818 |
cagagaattgggcaaggcaacttgataacgtttggctgagaatggattaagccgcattaagcatattattgaggaaaaaatgttgtaccattcttgtacc |
10639719 |
T |
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| Q |
110 |
catc--gtgtacttccactttcaaacttaaaagttaaaactgcatttgtagacgtcaatatccactattaatttaaaatcaaccnnnnnnnnnctttgct |
207 |
Q |
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| T |
10639718 |
catcgtgtgtacttccactttcaaacttaaaagttaaaactgcatttgtagacgtcaatatccactattaatttaaaatcaa-ctttttttttttttgct |
10639620 |
T |
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| Q |
208 |
ggaatattttgagttagctataccctaaattaatcatgccaaaccagtagttatcatgtctgccacgacaacaccttcactgttaaacactcctatagta |
307 |
Q |
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| T |
10639619 |
ggaatattttgagtcagctataccctgaattaatcatgccaaaacagtagttatcatgtctgccacgacaacaccttcactgttaaacactactat-gta |
10639521 |
T |
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| Q |
308 |
tatagtaatttatttggtgcatgagtcaaaaatttagtcatcaatttcgttttgagaagtaacaaaagtctatgataataagt |
390 |
Q |
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| T |
10639520 |
tatagtaatttatttggtgcatgagtcaaaaatttagtcatcaatttggttttgagaagtaacaaaagtctatgataataagt |
10639438 |
T |
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