View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3376-Insertion-14 (Length: 279)

Name: NF3376-Insertion-14
Description: NF3376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3376-Insertion-14
NF3376-Insertion-14
[»] chr5 (15 HSPs)
chr5 (8-202)||(32463613-32463807)
chr5 (8-97)||(32457328-32457417)
chr5 (206-279)||(18033982-18034055)
chr5 (206-279)||(22512305-22512378)
chr5 (206-279)||(7617133-7617206)
chr5 (206-264)||(33855085-33855143)
chr5 (206-279)||(2614676-2614749)
chr5 (206-279)||(33801469-33801542)
chr5 (206-278)||(38470579-38470651)
chr5 (208-265)||(25915028-25915085)
chr5 (206-279)||(41334690-41334763)
chr5 (208-278)||(5256997-5257067)
chr5 (206-278)||(32473422-32473494)
chr5 (206-263)||(17208074-17208131)
chr5 (205-257)||(15409527-15409579)
[»] scaffold0161 (1 HSPs)
scaffold0161 (8-100)||(23139-23231)
[»] chr4 (35 HSPs)
chr4 (206-273)||(1771299-1771366)
chr4 (206-279)||(12496956-12497029)
chr4 (205-279)||(27550308-27550382)
chr4 (208-279)||(43514713-43514784)
chr4 (206-279)||(25051693-25051766)
chr4 (206-279)||(27864564-27864637)
chr4 (206-279)||(28982849-28982922)
chr4 (206-279)||(33703141-33703214)
chr4 (206-279)||(55966373-55966446)
chr4 (209-279)||(23204805-23204875)
chr4 (208-278)||(27893870-27893940)
chr4 (206-279)||(23035980-23036053)
chr4 (206-279)||(27316740-27316813)
chr4 (206-279)||(35017733-35017805)
chr4 (206-279)||(48463477-48463550)
chr4 (206-258)||(28988473-28988525)
chr4 (208-279)||(43949828-43949900)
chr4 (206-278)||(55272404-55272476)
chr4 (208-278)||(3756274-3756344)
chr4 (206-263)||(46827749-46827806)
chr4 (206-278)||(711960-712032)
chr4 (206-254)||(960922-960970)
chr4 (206-278)||(17619180-17619252)
chr4 (208-279)||(39631102-39631174)
chr4 (206-257)||(30189273-30189324)
chr4 (208-279)||(31680904-31680975)
chr4 (208-278)||(35037007-35037077)
chr4 (207-273)||(41878407-41878473)
chr4 (206-279)||(21687006-21687079)
chr4 (206-263)||(32728357-32728414)
chr4 (208-273)||(43735744-43735809)
chr4 (201-258)||(50526084-50526141)
chr4 (206-273)||(41847971-41848038)
chr4 (210-264)||(54473455-54473509)
chr4 (206-278)||(45490341-45490413)
[»] scaffold0157 (1 HSPs)
scaffold0157 (206-279)||(23448-23521)
[»] chr3 (20 HSPs)
chr3 (206-279)||(54246175-54246248)
chr3 (206-279)||(24688429-24688502)
chr3 (206-279)||(42100688-42100761)
chr3 (207-279)||(42394446-42394518)
chr3 (206-279)||(25413681-25413754)
chr3 (206-279)||(40808865-40808938)
chr3 (206-279)||(46941053-46941126)
chr3 (207-279)||(54237097-54237169)
chr3 (206-273)||(47191059-47191125)
chr3 (206-279)||(45126955-45127028)
chr3 (208-273)||(53581891-53581956)
chr3 (206-278)||(4190293-4190365)
chr3 (206-278)||(9434124-9434196)
chr3 (206-279)||(36150130-36150203)
chr3 (207-279)||(40480750-40480822)
chr3 (208-273)||(1078229-1078293)
chr3 (206-279)||(53273711-53273784)
chr3 (206-278)||(10457920-10457992)
chr3 (208-279)||(27748565-27748636)
chr3 (206-263)||(25996268-25996325)
[»] chr6 (18 HSPs)
chr6 (206-279)||(7273362-7273435)
chr6 (206-279)||(9698360-9698433)
chr6 (206-279)||(26670036-26670109)
chr6 (206-279)||(26466799-26466872)
chr6 (206-278)||(21279929-21280001)
chr6 (208-279)||(24204014-24204085)
chr6 (208-279)||(30735984-30736055)
chr6 (206-279)||(13743248-13743321)
chr6 (206-279)||(13748748-13748821)
chr6 (206-279)||(30014343-30014416)
chr6 (206-278)||(3213400-3213472)
chr6 (206-278)||(21293705-21293777)
chr6 (206-279)||(7292747-7292820)
chr6 (206-279)||(7367549-7367622)
chr6 (206-273)||(31109255-31109322)
chr6 (208-278)||(27441544-27441614)
chr6 (206-263)||(33242403-33242460)
chr6 (206-264)||(33253913-33253971)
[»] chr2 (26 HSPs)
chr2 (206-279)||(1750414-1750487)
chr2 (207-279)||(19047158-19047230)
chr2 (206-273)||(16096747-16096814)
chr2 (206-279)||(12302280-12302353)
chr2 (208-279)||(43490428-43490499)
chr2 (206-279)||(30838632-30838705)
chr2 (206-278)||(4764754-4764826)
chr2 (208-279)||(33229303-33229375)
chr2 (206-279)||(43335790-43335863)
chr2 (206-278)||(43114557-43114629)
chr2 (208-278)||(11825682-11825752)
chr2 (206-263)||(966877-966934)
chr2 (208-273)||(41282007-41282072)
chr2 (206-278)||(12415488-12415560)
chr2 (206-278)||(12427548-12427620)
chr2 (206-273)||(16803968-16804035)
chr2 (206-273)||(16843250-16843317)
chr2 (207-258)||(34817824-34817875)
chr2 (206-245)||(42849907-42849946)
chr2 (208-278)||(6518497-6518566)
chr2 (208-254)||(8896635-8896681)
chr2 (206-263)||(18491705-18491762)
chr2 (206-273)||(42026767-42026836)
chr2 (208-249)||(7070418-7070459)
chr2 (206-278)||(14285676-14285748)
chr2 (206-258)||(20700945-20700997)
[»] chr1 (26 HSPs)
chr1 (206-279)||(43571113-43571186)
chr1 (206-279)||(5489776-5489849)
chr1 (206-279)||(24769526-24769599)
chr1 (206-279)||(48498989-48499062)
chr1 (206-279)||(50448287-50448360)
chr1 (208-279)||(4401329-4401401)
chr1 (206-273)||(750338-750405)
chr1 (208-273)||(7447828-7447892)
chr1 (206-278)||(23989551-23989624)
chr1 (205-278)||(37814777-37814850)
chr1 (206-278)||(44112677-44112749)
chr1 (206-278)||(48119628-48119700)
chr1 (208-279)||(2497589-2497660)
chr1 (206-278)||(35003294-35003366)
chr1 (206-264)||(41065153-41065211)
chr1 (206-263)||(14427347-14427404)
chr1 (206-263)||(38113238-38113295)
chr1 (206-278)||(38335918-38335990)
chr1 (206-258)||(51898601-51898653)
chr1 (206-273)||(35000146-35000213)
chr1 (206-239)||(4888055-4888088)
chr1 (206-263)||(45705825-45705882)
chr1 (205-278)||(46168382-46168455)
chr1 (206-278)||(26585462-26585534)
chr1 (206-278)||(45427773-45427845)
chr1 (206-278)||(45639760-45639832)
[»] scaffold0038 (1 HSPs)
scaffold0038 (207-279)||(112656-112728)
[»] chr8 (24 HSPs)
chr8 (204-279)||(2165990-2166065)
chr8 (206-273)||(29705362-29705429)
chr8 (206-279)||(2546996-2547069)
chr8 (206-279)||(11582766-11582839)
chr8 (206-279)||(36743510-36743583)
chr8 (208-279)||(42295197-42295268)
chr8 (206-279)||(30660769-30660842)
chr8 (207-279)||(45397317-45397389)
chr8 (208-279)||(26125637-26125708)
chr8 (208-279)||(30912589-30912660)
chr8 (208-279)||(42699259-42699330)
chr8 (206-279)||(5754903-5754976)
chr8 (206-279)||(42197462-42197535)
chr8 (206-278)||(18066746-18066818)
chr8 (208-279)||(29800977-29801048)
chr8 (214-279)||(31384672-31384737)
chr8 (206-278)||(1375542-1375614)
chr8 (206-278)||(35181516-35181588)
chr8 (208-279)||(20148762-20148833)
chr8 (206-278)||(34304788-34304860)
chr8 (206-240)||(28977146-28977180)
chr8 (206-258)||(37038609-37038661)
chr8 (208-278)||(33630021-33630091)
chr8 (206-278)||(16603654-16603726)
[»] chr7 (30 HSPs)
chr7 (204-279)||(42972850-42972925)
chr7 (206-279)||(5015395-5015468)
chr7 (206-279)||(24001039-24001112)
chr7 (206-279)||(42538458-42538531)
chr7 (206-279)||(35069721-35069794)
chr7 (206-273)||(5810957-5811024)
chr7 (208-279)||(4638226-4638297)
chr7 (206-279)||(9216302-9216374)
chr7 (208-273)||(43343657-43343722)
chr7 (208-273)||(44416967-44417032)
chr7 (206-278)||(27535259-27535331)
chr7 (206-279)||(41861674-41861749)
chr7 (207-278)||(31408661-31408732)
chr7 (215-278)||(32029845-32029908)
chr7 (208-279)||(44326180-44326251)
chr7 (208-278)||(10573751-10573821)
chr7 (208-278)||(16180385-16180454)
chr7 (209-279)||(26898429-26898499)
chr7 (229-278)||(38160607-38160656)
chr7 (206-274)||(39998408-39998476)
chr7 (206-278)||(40236919-40236991)
chr7 (206-273)||(5194264-5194331)
chr7 (206-239)||(38160661-38160694)
chr7 (206-279)||(45326020-45326093)
chr7 (206-278)||(24280624-24280696)
chr7 (206-278)||(31513287-31513359)
chr7 (204-279)||(27393287-27393361)
chr7 (206-273)||(43317443-43317510)
chr7 (206-259)||(47279744-47279797)
chr7 (206-258)||(41423812-41423864)
[»] scaffold0119 (1 HSPs)
scaffold0119 (206-279)||(685-758)
[»] scaffold0187 (2 HSPs)
scaffold0187 (206-279)||(14215-14288)
scaffold0187 (206-279)||(24543-24616)
[»] scaffold0385 (1 HSPs)
scaffold0385 (206-279)||(11251-11324)
[»] scaffold0003 (1 HSPs)
scaffold0003 (208-278)||(45747-45817)


Alignment Details
Target: chr5 (Bit Score: 183; Significance: 5e-99; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 8 - 202
Target Start/End: Complemental strand, 32463807 - 32463613
Alignment:
Q  8 ccatagacagtggctgctctgtctaagaaggtgagtggggttagagatgttgaatttgcttggtttctggttaactggtccattgtatatgaatggtttt 107  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32463807 ccatagacagtggctgctctttctaagaaggtgagtggggttagagctgttgaatttgcttggtttctggttaactggtccattgtatatgaatggtttt 32463708  T
Q  108 ttgttctggttagtacactctgcactgcactgagtcgtcacatttaaatagtaatgagtgtaaccaacctgaagtaacattagtggtagatactc 202  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32463707 ttgttctggttagtacactctgcactgcattgagtcgtcacatttaaatagtaatgagtgtaaccaacctgaagtaacattagtggtagatactc 32463613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 8 - 97
Target Start/End: Original strand, 32457328 - 32457417
Alignment:
Q  8 ccatagacagtggctgctctgtctaagaaggtgagtggggttagagatgttgaatttgcttggtttctggttaactggtccattgtatat 97  Q
    |||||||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||||||    
T  32457328 ccatagacagtggctgctctttctaagaaggtgagtggggttagagccgttgaatttgcttggtttctggttaactggttcattgtatat 32457417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 206 - 279
Target Start/End: Original strand, 18033982 - 18034055
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaag 279  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |||||    
T  18033982 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccctatgtattagggatatttttgtaag 18034055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 206 - 279
Target Start/End: Original strand, 22512305 - 22512378
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaag 279  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||    
T  22512305 ggaaaatgttacatgaacaccctttattcctacactccattgtacactccatgtattagggatattttggtaag 22512378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 206 - 279
Target Start/End: Original strand, 7617133 - 7617206
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaag 279  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||| |||||    
T  7617133 ggaaaatgttacatgaacaccctttattcatacactccattatacaccccatgtattagggatattttggtaag 7617206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 206 - 264
Target Start/End: Complemental strand, 33855143 - 33855085
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattag 264  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  33855143 ggaaaatgttacatgaacaccctttattcctacaccccattgtacaccccatgtattag 33855085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 206 - 279
Target Start/End: Complemental strand, 2614749 - 2614676
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaag 279  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||| |||||||| |||||    
T  2614749 ggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaag 2614676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 206 - 279
Target Start/End: Original strand, 33801469 - 33801542
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaag 279  Q
    ||||||||||||||||||| |||||||| |||||| ||||||||||| ||||||||||| |||||||| |||||    
T  33801469 ggaaaatgttacatgaacatcctttatttctacaccccattgtacactccatgtattagggatattttagtaag 33801542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 206 - 278
Target Start/End: Original strand, 38470579 - 38470651
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaa 278  Q
    |||||||||||||| |||||||||||||| |||| |||||||||||||||||||||||  |||||||| ||||    
T  38470579 ggaaaatgttacataaacaccctttattcatacattccattgtacaccccatgtattaaggatattttggtaa 38470651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 208 - 265
Target Start/End: Complemental strand, 25915085 - 25915028
Alignment:
Q  208 aaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattaga 265  Q
    |||||||||||||||||||||||||||||||||  |||||||||||| ||||||||||    
T  25915085 aaaatgttacatgaacaccctttattcctacacctcattgtacacccaatgtattaga 25915028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 206 - 279
Target Start/End: Complemental strand, 41334763 - 41334690
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaag 279  Q
    ||||||||||||||||||||||||||||| |||||  |||| ||||||| ||||||||| |||||||| |||||    
T  41334763 ggaaaatgttacatgaacaccctttattcatacacctcattatacaccctatgtattagggatattttggtaag 41334690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 208 - 278
Target Start/End: Original strand, 5256997 - 5257067
Alignment:
Q  208 aaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaa 278  Q
    |||||||||||| |||||| ||||||| ||||  ||||||||||||||||||||||| |||||||| ||||    
T  5256997 aaaatgttacataaacaccatttattcatacatcccattgtacaccccatgtattagggatattttggtaa 5257067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 206 - 278
Target Start/End: Complemental strand, 32473494 - 32473422
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaa 278  Q
    |||||||||||||||||||||||||| || |||||   |||||||||| |||| ||||| |||||||| ||||    
T  32473494 ggaaaatgttacatgaacaccctttaatcatacaccttattgtacaccacatgcattagggatattttggtaa 32473422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 206 - 263
Target Start/End: Original strand, 17208074 - 17208131
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtatta 263  Q
    |||||||||||| ||||||||||||| || ||||||  ||||||||||||||| ||||    
T  17208074 ggaaaatgttacgtgaacaccctttaatcatacactttattgtacaccccatgcatta 17208131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 257
Target Start/End: Original strand, 15409527 - 15409579
Alignment:
Q  205 gggaaaatgttacatgaacaccctttattcctacactccattgtacaccccat 257  Q
    ||||||||||||||| ||||||||||||||  | || || |||||||||||||    
T  15409527 gggaaaatgttacataaacaccctttattcgcatacacccttgtacaccccat 15409579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 8 - 100
Target Start/End: Complemental strand, 23231 - 23139
Alignment:
Q  8 ccatagacagtggctgctctgtctaagaaggtgagtggggttagagatgttgaatttgcttggtttctggttaactggtccattgtatatgaa 100  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||| ||||| |||||||||||||    
T  23231 ccatagacagtagctgctctgtctaagaaggtgagtggggttagaggtgtcgagtttgcttggtttctggttatctggttcattgtatatgaa 23139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 5e-28; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 206 - 273
Target Start/End: Complemental strand, 1771366 - 1771299
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatatttt 273  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  1771366 ggaaaatgttacatgaacaccctttattcctacaccccattgtacaccccatgtattagagatatttt 1771299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 206 - 279
Target Start/End: Original strand, 12496956 - 12497029
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaag 279  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  12496956 ggaaaatgttatatgaacaccctttattcctacactccattgtacatcccatgtattagagatattttggtaag 12497029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 205 - 279
Target Start/End: Original strand, 27550308 - 27550382
Alignment:
Q  205 gggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaag 279  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||||||| |||||    
T  27550308 gggaaaatgttacatgaacaccctttatttctacactccattgtacacctcatgtattagggatattttggtaag 27550382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 208 - 279
Target Start/End: Complemental strand, 43514784 - 43514713
Alignment:
Q  208 aaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaag 279  Q
    |||||||||||||||||||||||||||||||||||||||||||||  |||||||||| | |||||| |||||    
T  43514784 aaaatgttacatgaacaccctttattcctacactccattgtacacttcatgtattagggttattttggtaag 43514713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 206 - 279
Target Start/End: Original strand, 25051693 - 25051766
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaag 279  Q
    ||||||||| |||||||||| |||||||||||||| ||||||||||||| ||||||||| |||||||| |||||    
T  25051693 ggaaaatgtcacatgaacacactttattcctacaccccattgtacaccctatgtattagggatattttggtaag 25051766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 206 - 279
Target Start/End: Original strand, 27864564 - 27864637
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaag 279  Q
    |||||||||||||| |||||| ||||||| ||||  ||||||||||||||||||||||| |||||||| |||||    
T  27864564 ggaaaatgttacataaacaccatttattcatacatcccattgtacaccccatgtattagggatattttggtaag 27864637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 206 - 279
Target Start/End: Complemental strand, 28982922 - 28982849
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaag 279  Q
    |||||||||||||||||||||||||||| |||||| | |||||||| ||||| |||||| |||||||| |||||    
T  28982922 ggaaaatgttacatgaacaccctttatttctacaccctattgtacatcccatatattagggatattttggtaag 28982849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 206 - 279
Target Start/End: Original strand, 33703141 - 33703214
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaag 279  Q
    |||||||||||||||||||||||||||| |||||    ||||||||||||||||||||| |||||||| |||||    
T  33703141 ggaaaatgttacatgaacaccctttatttctacatcttattgtacaccccatgtattagggatattttggtaag 33703214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 206 - 279
Target Start/End: Complemental strand, 55966446 - 55966373
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaag 279  Q
    |||||||||||||| |||||||||||||| ||||  |||||||||| |||||||||||| |||||||| |||||    
T  55966446 ggaaaatgttacataaacaccctttattcatacatcccattgtacatcccatgtattagggatattttggtaag 55966373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 209 - 279
Target Start/End: Complemental strand, 23204875 - 23204805
Alignment:
Q  209 aaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaag 279  Q
    ||||||||||||||||| |||||||||||||  |||||||||| || ||||||||| |||||||| |||||    
T  23204875 aaatgttacatgaacactctttattcctacatcccattgtacatcctatgtattagggatatttttgtaag 23204805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 208 - 278
Target Start/End: Complemental strand, 27893940 - 27893870
Alignment:
Q  208 aaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaa 278  Q
    |||||||||||| |||||| ||||||| ||||  ||||||||||||||||||||||| |||||||| ||||    
T  27893940 aaaatgttacataaacaccatttattcatacatcccattgtacaccccatgtattagggatattttggtaa 27893870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 206 - 279
Target Start/End: Original strand, 23035980 - 23036053
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaag 279  Q
    ||||||||||||||||||  ||||||||||||||| | ||||||||||| || |||||| |||||||| |||||    
T  23035980 ggaaaatgttacatgaacctcctttattcctacaccctattgtacaccctatatattagggatatttttgtaag 23036053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 206 - 279
Target Start/End: Complemental strand, 27316813 - 27316740
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaag 279  Q
    ||||||||||| | |||||||||||||||||||||  |||| ||||||||||||||||  |||||||| |||||    
T  27316813 ggaaaatgttaaacgaacaccctttattcctacacctcattatacaccccatgtattaaggatattttggtaag 27316740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 206 - 279
Target Start/End: Original strand, 35017733 - 35017805
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaag 279  Q
    |||||||||||||||||||||||||||||||| |   |||||||||||||||||| ||| |||||||| |||||    
T  35017733 ggaaaatgttacatgaacaccctttattcctatatctcattgtacaccccatgta-tagggatattttggtaag 35017805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 206 - 279
Target Start/End: Complemental strand, 48463550 - 48463477
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaag 279  Q
    |||||||||||||| |||||| ||||||| |||| | ||||||||| |||||||||||| |||||||| |||||    
T  48463550 ggaaaatgttacataaacaccatttattcatacatttcattgtacatcccatgtattagggatattttggtaag 48463477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 206 - 258
Target Start/End: Original strand, 28988473 - 28988525
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatg 258  Q
    ||||||||||||||||||||||||||||| |||||  ||||||||||||||||    
T  28988473 ggaaaatgttacatgaacaccctttattcatacacctcattgtacaccccatg 28988525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 208 - 279
Target Start/End: Complemental strand, 43949900 - 43949828
Alignment:
Q  208 aaaatgttacatgaacacccttt-attcctacactccattgtacaccccatgtattagagatattttcgtaag 279  Q
    |||||| |||||||||||||||| |||||| |||  |||||||||||||||||||||| |||||||| |||||    
T  43949900 aaaatgatacatgaacacccttttattcctgcacctcattgtacaccccatgtattagggatattttggtaag 43949828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 206 - 278
Target Start/End: Complemental strand, 55272476 - 55272404
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaa 278  Q
    ||||||||||||||||||| |||||| || ||||||| ||||||||||||||| ||||  |||||||| ||||    
T  55272476 ggaaaatgttacatgaacatcctttaatcatacactctattgtacaccccatgcattaaggatattttggtaa 55272404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 208 - 278
Target Start/End: Complemental strand, 3756344 - 3756274
Alignment:
Q  208 aaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaa 278  Q
    |||||||||||||||||||||||| || ||||| | ||||||||||||||| ||||  |||||||| ||||    
T  3756344 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattaaggatattttagtaa 3756274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 206 - 263
Target Start/End: Complemental strand, 46827806 - 46827749
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtatta 263  Q
    |||||||||||||||||||||||||| || ||||||| ||||||||||| ||| ||||    
T  46827806 ggaaaatgttacatgaacaccctttaatcatacactctattgtacacccaatgcatta 46827749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 206 - 278
Target Start/End: Original strand, 711960 - 712032
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaa 278  Q
    |||||||||||||||||||||||||| || ||||| | ||||||||||| ||| ||||  |||||||| ||||    
T  711960 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccctatgcattaaggatattttggtaa 712032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 206 - 254
Target Start/End: Complemental strand, 960970 - 960922
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccc 254  Q
    |||||||||||||||||||||||||| || ||||||| |||||||||||    
T  960970 ggaaaatgttacatgaacaccctttaatcatacactctattgtacaccc 960922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 206 - 278
Target Start/End: Complemental strand, 17619252 - 17619180
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaa 278  Q
    ||||||||||||||||||||| |||| || ||||| | ||||||||||||||| ||||  |||||||| ||||    
T  17619252 ggaaaatgttacatgaacaccttttaatcatacaccctattgtacaccccatgcattaaggatattttggtaa 17619180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 208 - 279
Target Start/End: Original strand, 39631102 - 39631174
Alignment:
Q  208 aaaatgttacatgaacacccttt-attcctacactccattgtacaccccatgtattagagatattttcgtaag 279  Q
    |||||| ||||||||| |||||| ||||||||||  ||||||||||| |||||||||| |||||||| |||||    
T  39631102 aaaatgatacatgaacccccttttattcctacacctcattgtacacctcatgtattagggatattttggtaag 39631174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 206 - 257
Target Start/End: Original strand, 30189273 - 30189324
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccat 257  Q
    ||||||||||||||||||||| |||||||  ||||||||| |||||||||||    
T  30189273 ggaaaatgttacatgaacaccatttattcacacactccatcgtacaccccat 30189324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 208 - 279
Target Start/End: Original strand, 31680904 - 31680975
Alignment:
Q  208 aaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaag 279  Q
    |||||||||| | |||||| ||||||| |||| ||||||||||||||| | |||||| |||||||| |||||    
T  31680904 aaaatgttacgtaaacaccatttattcatacattccattgtacaccccgtatattagggatattttggtaag 31680975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 278
Target Start/End: Original strand, 35037007 - 35037077
Alignment:
Q  208 aaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaa 278  Q
    |||||||||||||| |||||||||  | ||||||| ||||||||||||||| ||||  |||||||| ||||    
T  35037007 aaaatgttacatgagcaccctttaaccatacactctattgtacaccccatgcattaaggatattttggtaa 35037077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 273
Target Start/End: Original strand, 41878407 - 41878473
Alignment:
Q  207 gaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatatttt 273  Q
    ||||||||||||||||||| |||||||| |||||  |||||||||||| ||  ||||| ||||||||    
T  41878407 gaaaatgttacatgaacactctttattcatacacctcattgtacaccctatccattagggatatttt 41878473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 206 - 279
Target Start/End: Original strand, 21687006 - 21687079
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaag 279  Q
    ||||||||||||||||||| ||||||||  ||||| ||||| |||| |  |||||||||| ||||||| |||||    
T  21687006 ggaaaatgttacatgaacatcctttatttttacaccccattatacatcttatgtattagaaatattttagtaag 21687079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 206 - 263
Target Start/End: Original strand, 32728357 - 32728414
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtatta 263  Q
    ||||||||||||||||||| |||||| || ||||| | ||||||||||||||| ||||    
T  32728357 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcatta 32728414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 208 - 273
Target Start/End: Original strand, 43735744 - 43735809
Alignment:
Q  208 aaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatatttt 273  Q
    ||||| ||||||||||| ||||||||||||||   |||| ||||  ||||||||||||||||||||    
T  43735744 aaaatattacatgaacatcctttattcctacatctcattatacattccatgtattagagatatttt 43735809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 258
Target Start/End: Original strand, 50526084 - 50526141
Alignment:
Q  201 tcatgggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatg 258  Q
    |||| |||||||||||||| ||||||||||||| ||| || || ||||||||||||||    
T  50526084 tcataggaaaatgttacataaacaccctttatttctatacacccttgtacaccccatg 50526141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 206 - 273
Target Start/End: Original strand, 41847971 - 41848038
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatatttt 273  Q
    ||||||||||||| ||||| ||||| |||  ||||  |||||||||||||||| |||||||| |||||    
T  41847971 ggaaaatgttacaagaacatccttttttcacacacctcattgtacaccccatgcattagagacatttt 41848038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 264
Target Start/End: Original strand, 54473455 - 54473509
Alignment:
Q  210 aatgttacatgaacaccctttattcctacactccattgtacaccccatgtattag 264  Q
    |||| ||||||||||||||||||||| | || || |||||||| |||||||||||    
T  54473455 aatgatacatgaacaccctttattcccatacacccttgtacactccatgtattag 54473509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 278
Target Start/End: Complemental strand, 45490413 - 45490341
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaa 278  Q
    ||||||||||||||||||||  ||||||  ||||  | |||||||||| |||||||||| |||| ||| ||||    
T  45490413 ggaaaatgttacatgaacacattttatttatacatccaattgtacacctcatgtattagggatactttagtaa 45490341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 206 - 279
Target Start/End: Complemental strand, 23521 - 23448
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaag 279  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  23521 ggaaaatgttatatgaacaccctttattcctacactccattgtacatcccatgtattagagatattttggtaag 23448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 8e-27; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 206 - 279
Target Start/End: Complemental strand, 54246248 - 54246175
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaag 279  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||    
T  54246248 ggaaaatgttacatgaacaccctttattcctacaccccattgtacaccctatgtattagagatatttttgtaag 54246175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 206 - 279
Target Start/End: Complemental strand, 24688502 - 24688429
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaag 279  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||| |||||    
T  24688502 ggaaaatgttacatgaacaccctttatttctacactccattgtacaccctatgtattagggatattttggtaag 24688429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 206 - 279
Target Start/End: Original strand, 42100688 - 42100761
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaag 279  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| |||||||| |||||    
T  42100688 ggaaaatgttacatgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttggtaag 42100761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 207 - 279
Target Start/End: Complemental strand, 42394518 - 42394446
Alignment:
Q  207 gaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaag 279  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||| |||||    
T  42394518 gaaaatgttacatgaacaccctttattcctacattccattgtacaccctatgtattagggatattttggtaag 42394446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 206 - 279
Target Start/End: Original strand, 25413681 - 25413754
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaag 279  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||  ||||||||| |||||||| |||||    
T  25413681 ggaaaatgttacatgaacaccctttattcctacaccccattgtacaccttatgtattagggatatttttgtaag 25413754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 206 - 279
Target Start/End: Original strand, 40808865 - 40808938
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaag 279  Q
    |||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||| |||||||| |||||    
T  40808865 ggaaaatgttacatcaacaccatttattcctacaccccattgtacaccccatgtattagggatattttggtaag 40808938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 206 - 279
Target Start/End: Original strand, 46941053 - 46941126
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaag 279  Q
    ||||||||||||||||||||||||||||||||||   |||||||||||||||||||||| |||||||| |||||    
T  46941053 ggaaaatgttacatgaacaccctttattcctacatctcattgtacaccccatgtattagggatattttggtaag 46941126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 207 - 279
Target Start/End: Original strand, 54237097 - 54237169
Alignment:
Q  207 gaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaag 279  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||| |||||||| |||||    
T  54237097 gaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaag 54237169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 206 - 273
Target Start/End: Complemental strand, 47191125 - 47191059
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatatttt 273  Q
    |||||||||||||||||||||||||||||||||||  ||||||||| |||||||||||||||||||||    
T  47191125 ggaaaatgttacatgaacaccctttattcctacacctcattgtaca-cccatgtattagagatatttt 47191059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 206 - 279
Target Start/End: Complemental strand, 45127028 - 45126955
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaag 279  Q
    |||||||||||||| |||||||||||||| ||||  ||||||||||||||||||||||| |||||||| |||||    
T  45127028 ggaaaatgttacataaacaccctttattcatacatcccattgtacaccccatgtattagggatattttggtaag 45126955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 208 - 273
Target Start/End: Complemental strand, 53581956 - 53581891
Alignment:
Q  208 aaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatatttt 273  Q
    |||||||||||||||||| |||||||| |||||||||||||||| || ||||||||| ||||||||    
T  53581956 aaaatgttacatgaacactctttattcatacactccattgtacatcctatgtattagggatatttt 53581891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 206 - 278
Target Start/End: Complemental strand, 4190365 - 4190293
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaa 278  Q
    |||||||||||||||||||||||||| || ||||| | ||||||||||  |||||||||||||||||| ||||    
T  4190365 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccttatgtattagagatattttggtaa 4190293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 206 - 278
Target Start/End: Original strand, 9434124 - 9434196
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaa 278  Q
    |||||||||||||||||||||||||| || ||||||| ||||||||||||||| ||||| || ||||| ||||    
T  9434124 ggaaaatgttacatgaacaccctttaatcatacactctattgtacaccccatgcattagggacattttggtaa 9434196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 206 - 279
Target Start/End: Original strand, 36150130 - 36150203
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaag 279  Q
    ||||||||||||||||| ||||||||||| ||||| ||||| ||||||| |||||| || |||||||| |||||    
T  36150130 ggaaaatgttacatgaataccctttattcatacaccccattatacaccctatgtatcagggatattttggtaag 36150203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 207 - 279
Target Start/End: Original strand, 40480750 - 40480822
Alignment:
Q  207 gaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaag 279  Q
    |||||||||||||||||||||||||||| ||  | |||||||||| || ||||||||| |||||||| |||||    
T  40480750 gaaaatgttacatgaacaccctttattcatatgccccattgtacatcctatgtattagggatattttggtaag 40480822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 208 - 273
Target Start/End: Original strand, 1078229 - 1078293
Alignment:
Q  208 aaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatatttt 273  Q
    ||||||||||||||||||||||||||||| |||  |||||||||||  ||||||||| ||||||||    
T  1078229 aaaatgttacatgaacaccctttattcctgcacctcattgtacacctaatgtattag-gatatttt 1078293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 206 - 279
Target Start/End: Complemental strand, 53273784 - 53273711
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaag 279  Q
    ||||||||||| ||||||| | |||||||||| ||  ||||||||| |||||||||||| |||||||| |||||    
T  53273784 ggaaaatgttatatgaacatcatttattcctatacctcattgtacatcccatgtattagggatattttggtaag 53273711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 206 - 278
Target Start/End: Complemental strand, 10457992 - 10457920
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaa 278  Q
    ||||||||||||||||||||| |||| || ||||| | ||||||||||||||| ||||  |||||||| ||||    
T  10457992 ggaaaatgttacatgaacaccttttaatcatacaccctattgtacaccccatgcattaaggatattttggtaa 10457920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 208 - 279
Target Start/End: Original strand, 27748565 - 27748636
Alignment:
Q  208 aaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaag 279  Q
    ||||||||||||||||||| ||||||| |||||  |||| ||||||  ||||||||| |||||||| |||||    
T  27748565 aaaatgttacatgaacaccttttattcatacacctcattatacaccttatgtattagggatattttggtaag 27748636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 263
Target Start/End: Original strand, 25996268 - 25996325
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtatta 263  Q
    |||||||||||||||||||||||||| || ||||    |||||||||||||| |||||    
T  25996268 ggaaaatgttacatgaacaccctttaatcatacatcttattgtacaccccatatatta 25996325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 206 - 279
Target Start/End: Complemental strand, 7273435 - 7273362
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaag 279  Q
    |||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||| |||||    
T  7273435 ggaaaatgttacatgaacaccctttattcctacaccttattgtacaccccatgtattagagatattttggtaag 7273362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 206 - 279
Target Start/End: Complemental strand, 9698433 - 9698360
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaag 279  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||| |||||||| |||||    
T  9698433 ggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaag 9698360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 206 - 279
Target Start/End: Complemental strand, 26670109 - 26670036
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaag 279  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||| |||||||||| |||||||| |||||    
T  26670109 ggaaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtattagggatattttggtaag 26670036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 206 - 279
Target Start/End: Original strand, 26466799 - 26466872
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaag 279  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||| | |||||| |||||    
T  26466799 ggaaaatgttacataaacaccctttattcctacaccccattgtacactccatgtattagggttattttggtaag 26466872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 206 - 278
Target Start/End: Original strand, 21279929 - 21280001
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaa 278  Q
    |||||||||||||||||||||||||||| ||||| ||||||| ||| |||||||||||| |||||||| ||||    
T  21279929 ggaaaatgttacatgaacaccctttatttctacattccattgcacatcccatgtattagggatattttggtaa 21280001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 208 - 279
Target Start/End: Complemental strand, 24204085 - 24204014
Alignment:
Q  208 aaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaag 279  Q
    ||||||||||||||||||| ||||||||||||| | ||||||||| ||||||||||| |||||||| |||||    
T  24204085 aaaatgttacatgaacaccatttattcctacaccctattgtacactccatgtattagggatattttggtaag 24204014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 208 - 279
Target Start/End: Original strand, 30735984 - 30736055
Alignment:
Q  208 aaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaag 279  Q
    ||||||||||||||||||  ||||||||||||| |||||||||||| |||||||||| |||||||| |||||    
T  30735984 aaaatgttacatgaacactttttattcctacaccccattgtacacctcatgtattagtgatattttggtaag 30736055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 206 - 279
Target Start/End: Complemental strand, 13743321 - 13743248
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaag 279  Q
    ||||||||||||||||||||| ||||||| ||||  | ||||||||||||||||||||| |||||||| |||||    
T  13743321 ggaaaatgttacatgaacaccttttattcatacatccaattgtacaccccatgtattagggatattttggtaag 13743248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 206 - 279
Target Start/End: Complemental strand, 13748821 - 13748748
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaag 279  Q
    ||||||||||||||||||||| ||||||| ||||  | ||||||||||||||||||||| |||||||| |||||    
T  13748821 ggaaaatgttacatgaacaccttttattcatacatccaattgtacaccccatgtattagggatattttggtaag 13748748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 206 - 279
Target Start/End: Original strand, 30014343 - 30014416
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaag 279  Q
    ||||||||||||||||||||||||||||||||||  ||||| |||| ||||||||||||  ||||||| |||||    
T  30014343 ggaaaatgttacatgaacaccctttattcctacatcccattatacatcccatgtattaggcatattttggtaag 30014416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 206 - 278
Target Start/End: Original strand, 3213400 - 3213472
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaa 278  Q
    |||||||||||||| |||||||||||||| ||||   |||||||||||||||||||||  |||||||| ||||    
T  3213400 ggaaaatgttacataaacaccctttattcatacatctcattgtacaccccatgtattaaggatattttggtaa 3213472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 206 - 278
Target Start/End: Complemental strand, 21293777 - 21293705
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaa 278  Q
    |||||||||||||| |||||||||||||| |||| | || ||||||||||||||||||  |||||||| ||||    
T  21293777 ggaaaatgttacataaacaccctttattcatacatttcactgtacaccccatgtattaaggatattttggtaa 21293705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 206 - 279
Target Start/End: Original strand, 7292747 - 7292820
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaag 279  Q
    ||||||||||||| ||||||| ||||||| |||||  |||| ||||||| ||||||||| |||||||| |||||    
T  7292747 ggaaaatgttacaagaacaccatttattcatacacctcattatacaccctatgtattagggatattttggtaag 7292820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 206 - 279
Target Start/End: Original strand, 7367549 - 7367622
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaag 279  Q
    ||||||||||| ||||||| | ||||||| |||||  ||||||||| |||||||||||| |||||||| |||||    
T  7367549 ggaaaatgttatatgaacatcatttattcatacacctcattgtacatcccatgtattagggatattttggtaag 7367622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 206 - 273
Target Start/End: Complemental strand, 31109322 - 31109255
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatatttt 273  Q
    |||||||||||||||||||||||||| || ||||  ||||| ||||||||||| | ||| ||||||||    
T  31109322 ggaaaatgttacatgaacaccctttaatcatacatcccattatacaccccatgcactagggatatttt 31109255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 278
Target Start/End: Original strand, 27441544 - 27441614
Alignment:
Q  208 aaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaa 278  Q
    |||||||||||||||||||||||| || ||||| | |||||||| || ||||||||  |||||||| ||||    
T  27441544 aaaatgttacatgaacaccctttaatcatacaccctattgtacatcctatgtattaaggatattttggtaa 27441614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 206 - 263
Target Start/End: Original strand, 33242403 - 33242460
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtatta 263  Q
    ||||||||||||||||||||| |||| || |||||   ||||||||||||||||||||    
T  33242403 ggaaaatgttacatgaacaccatttaatcatacaccttattgtacaccccatgtatta 33242460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 264
Target Start/End: Original strand, 33253913 - 33253971
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattag 264  Q
    ||||||||||||||||||||| |||| ||  |||| | ||||||||||||||| |||||    
T  33253913 ggaaaatgttacatgaacaccatttaatcacacaccctattgtacaccccatgcattag 33253971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 206 - 279
Target Start/End: Original strand, 1750414 - 1750487
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaag 279  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||| |||||    
T  1750414 ggaaaatgttacatgaacaccctttattcctacaccccattgtacaccctatgtattagggatatttttgtaag 1750487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 207 - 279
Target Start/End: Original strand, 19047158 - 19047230
Alignment:
Q  207 gaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaag 279  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||| |||||    
T  19047158 gaaaatgttacatgaacaccctttattcctacattccattgtacaccctatgtattagggatattttggtaag 19047230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 206 - 273
Target Start/End: Original strand, 16096747 - 16096814
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatatttt 273  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||    
T  16096747 ggaaaatgttacatgaacaccctttattcctacaccccattatacaccccatgtattagggatatttt 16096814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 206 - 279
Target Start/End: Complemental strand, 12302353 - 12302280
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaag 279  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||| |||||||| |||||    
T  12302353 ggaaaatgttacatgaacaccctttatttctacaccccattgtacaccctatgtattagggatatttttgtaag 12302280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 208 - 279
Target Start/End: Complemental strand, 43490499 - 43490428
Alignment:
Q  208 aaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaag 279  Q
    ||||||||||||||||||||||||||||||||  ||||||||||| | ||||||||| |||||||| |||||    
T  43490499 aaaatgttacatgaacaccctttattcctacatcccattgtacactctatgtattagggatattttggtaag 43490428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 206 - 279
Target Start/End: Original strand, 30838632 - 30838705
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaag 279  Q
    |||||||||||||||||||||||||||| |||||    ||||||||||||||||||||| |||||||| |||||    
T  30838632 ggaaaatgttacatgaacaccctttatttctacatcttattgtacaccccatgtattagggatattttggtaag 30838705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 206 - 278
Target Start/End: Complemental strand, 4764826 - 4764754
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaa 278  Q
    |||||||||||||| |||||| ||||||||||||| | |||||||||||||||||||| | ||||||| ||||    
T  4764826 ggaaaatgttacatcaacaccatttattcctacaccctattgtacaccccatgtattataaatattttggtaa 4764754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 208 - 279
Target Start/End: Original strand, 33229303 - 33229375
Alignment:
Q  208 aaaatgttacatgaacacccttt-attcctacactccattgtacaccccatgtattagagatattttcgtaag 279  Q
    |||||| |||||||||||||||| ||||||||||  |||||||||||||||||||||| |||||||| |||||    
T  33229303 aaaatgatacatgaacacccttttattcctacacctcattgtacaccccatgtattagggatattttggtaag 33229375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 206 - 279
Target Start/End: Complemental strand, 43335863 - 43335790
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaag 279  Q
    ||||||||||| ||||||| | |||||||||||||  ||||||||| |||||||||||| |||||||| |||||    
T  43335863 ggaaaatgttatatgaacatcatttattcctacacctcattgtacatcccatgtattagggatattttggtaag 43335790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 206 - 278
Target Start/End: Original strand, 43114557 - 43114629
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaa 278  Q
    |||||||||||||||||||||||||| || ||||| | ||||||||||||||| ||||| || ||||| ||||    
T  43114557 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggtaa 43114629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 208 - 278
Target Start/End: Complemental strand, 11825752 - 11825682
Alignment:
Q  208 aaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaa 278  Q
    |||||||||||||||||||||||| || ||||| | ||||||||||||||| ||||| || ||||| ||||    
T  11825752 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggtaa 11825682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 206 - 263
Target Start/End: Complemental strand, 966934 - 966877
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtatta 263  Q
    |||||||||||||||||||||||||| || ||||| | ||||||||||||||| ||||    
T  966934 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcatta 966877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 208 - 273
Target Start/End: Complemental strand, 41282072 - 41282007
Alignment:
Q  208 aaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatatttt 273  Q
    |||||||||||||||||||||||| || ||||| | ||||||||||||||| ||||| || |||||    
T  41282072 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacatttt 41282007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 206 - 278
Target Start/End: Complemental strand, 12415560 - 12415488
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaa 278  Q
    |||||||||||||||||||||||||| || |||||   ||||||||||||||| ||||| || ||||| ||||    
T  12415560 ggaaaatgttacatgaacaccctttaatcatacaccttattgtacaccccatgcattagggacattttggtaa 12415488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 206 - 278
Target Start/End: Complemental strand, 12427620 - 12427548
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaa 278  Q
    |||||||||||||||||||||||||| || |||||   ||||||||||||||| ||||| || ||||| ||||    
T  12427620 ggaaaatgttacatgaacaccctttaatcatacaccttattgtacaccccatgcattagggacattttggtaa 12427548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 206 - 273
Target Start/End: Original strand, 16803968 - 16804035
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatatttt 273  Q
    |||||||||||||||||||||||||| || ||||| | |||||||| |||||| ||||| || |||||    
T  16803968 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacatcccatgcattagggacatttt 16804035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 206 - 273
Target Start/End: Original strand, 16843250 - 16843317
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatatttt 273  Q
    |||||||||||||||||||||||||| || ||||| | |||||||| |||||| ||||| || |||||    
T  16843250 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacatcccatgcattagggacatttt 16843317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 207 - 258
Target Start/End: Complemental strand, 34817875 - 34817824
Alignment:
Q  207 gaaaatgttacatgaacaccctttattcctacactccattgtacaccccatg 258  Q
    ||||||||||||||||||||||||||||  ||||  ||||||||||||||||    
T  34817875 gaaaatgttacatgaacaccctttattcacacacctcattgtacaccccatg 34817824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 206 - 245
Target Start/End: Complemental strand, 42849946 - 42849907
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccat 245  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  42849946 ggaaaatgttacatgaacaccctttattcctacaccccat 42849907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 278
Target Start/End: Complemental strand, 6518566 - 6518497
Alignment:
Q  208 aaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaa 278  Q
    ||||||||||||||||||| |||| || ||||||| ||||||||||||||| ||||| || ||||| ||||    
T  6518566 aaaatgttacatgaacacc-tttaatcatacactctattgtacaccccatgcattagggacattttggtaa 6518497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 254
Target Start/End: Complemental strand, 8896681 - 8896635
Alignment:
Q  208 aaaatgttacatgaacaccctttattcctacactccattgtacaccc 254  Q
    |||||||||||||||||||||||||||  ||| ||||||||||||||    
T  8896681 aaaatgttacatgaacaccctttattcacacattccattgtacaccc 8896635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 206 - 263
Target Start/End: Original strand, 18491705 - 18491762
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtatta 263  Q
    |||||||||||||||||||||||||| || ||||| | |||||||||| |||| ||||    
T  18491705 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacacctcatgcatta 18491762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 273
Target Start/End: Original strand, 42026767 - 42026836
Alignment:
Q  206 ggaaaatgttacatgaacaccc--tttattcctacactccattgtacaccccatgtattagagatatttt 273  Q
    ||||||||||||||||||||||  ||||||| |||| ||||||||||| |||  | ||||| ||||||||    
T  42026767 ggaaaatgttacatgaacacccaatttattcatacattccattgtacatcccgcgcattagggatatttt 42026836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 249
Target Start/End: Original strand, 7070418 - 7070459
Alignment:
Q  208 aaaatgttacatgaacaccctttattcctacactccattgta 249  Q
    ||||||||||||||||||||||||||| ||||  ||||||||    
T  7070418 aaaatgttacatgaacaccctttattcatacatcccattgta 7070459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 278
Target Start/End: Original strand, 14285676 - 14285748
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaa 278  Q
    ||||||| |||||  ||||||||||| || ||||| | ||||||||||| || ||||| ||||||||| ||||    
T  14285676 ggaaaatattacacaaacaccctttaatcatacaccctattgtacaccctatatattaaagatattttggtaa 14285748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 258
Target Start/End: Complemental strand, 20700997 - 20700945
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatg 258  Q
    ||||||||||||||  |||||||||||||| | || || ||||||||||||||    
T  20700997 ggaaaatgttacatagacaccctttattcccatacacccttgtacaccccatg 20700945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 206 - 279
Target Start/End: Complemental strand, 43571186 - 43571113
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaag 279  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| |||||||| |||||    
T  43571186 ggaaaatgttacatgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttggtaag 43571113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 206 - 279
Target Start/End: Original strand, 5489776 - 5489849
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaag 279  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||| |||||||| |||||    
T  5489776 ggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaag 5489849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 206 - 279
Target Start/End: Complemental strand, 24769599 - 24769526
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaag 279  Q
    |||||||||| |||||||||| |||||| |||||||||||||||||||||||||||||| |||||||| |||||    
T  24769599 ggaaaatgtttcatgaacaccttttatttctacactccattgtacaccccatgtattagggatattttggtaag 24769526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 206 - 279
Target Start/End: Complemental strand, 48499062 - 48498989
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaag 279  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||||| |||||||| |||||    
T  48499062 ggaaaatgttacatgaacactctttatttctacactccattgtacacctcatgtattagggatattttggtaag 48498989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 206 - 279
Target Start/End: Complemental strand, 50448360 - 50448287
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaag 279  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||||  ||||||||| |||||||| |||||    
T  50448360 ggaaaatgttacatgaacactctttatttctacactccattgtacaccttatgtattagggatatttttgtaag 50448287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 208 - 279
Target Start/End: Original strand, 4401329 - 4401401
Alignment:
Q  208 aaaatgttacatgaacacccttt-attcctacactccattgtacaccccatgtattagagatattttcgtaag 279  Q
    |||||| ||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  4401329 aaaatgatacatgaacactcttttattcctacacttcattgtacaccccatgtattagagatattttggtaag 4401401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 206 - 273
Target Start/End: Complemental strand, 750405 - 750338
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatatttt 273  Q
    |||||||||||| |||||||||||  ||||||||| |||||||||||||||||||| || ||||||||    
T  750405 ggaaaatgttacgtgaacacccttatttcctacaccccattgtacaccccatgtatcagggatatttt 750338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 208 - 273
Target Start/End: Original strand, 7447828 - 7447892
Alignment:
Q  208 aaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatatttt 273  Q
    ||||||||||||||||| ||||||||||||||  |||||||||| ||||||||||| |||||||||    
T  7447828 aaaatgttacatgaacatcctttattcctacatcccattgtaca-cccatgtattacagatatttt 7447892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 206 - 278
Target Start/End: Complemental strand, 23989624 - 23989551
Alignment:
Q  206 ggaaaatgttacatgaacaccc-tttattcctacactccattgtacaccccatgtattagagatattttcgtaa 278  Q
    |||||||||||||||||||||| ||||||| ||||||| |||||| |||| ||||||||| |||||||| ||||    
T  23989624 ggaaaatgttacatgaacacccttttattcatacactcaattgtataccctatgtattagggatattttggtaa 23989551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 205 - 278
Target Start/End: Original strand, 37814777 - 37814850
Alignment:
Q  205 gggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaa 278  Q
    ||||||||||||||| |||||||||||||| ||||   |||||||||||||||||||||  |||||||| ||||    
T  37814777 gggaaaatgttacataaacaccctttattcatacatctcattgtacaccccatgtattaaggatattttggtaa 37814850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 206 - 278
Target Start/End: Original strand, 44112677 - 44112749
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaa 278  Q
    |||||||||||||||||||||||||| || ||||| | ||||||||||||||| ||||| || ||||| ||||    
T  44112677 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggtaa 44112749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 206 - 278
Target Start/End: Original strand, 48119628 - 48119700
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaa 278  Q
    |||||||||||||||||||||||||| || ||||| | ||||||||||||||| ||||  |||||||| ||||    
T  48119628 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattaaggatattttggtaa 48119700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 208 - 279
Target Start/End: Complemental strand, 2497660 - 2497589
Alignment:
Q  208 aaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaag 279  Q
    |||||||||||| |||||| ||||||| |||| ||||||||||||||||| |||||  |||||||| |||||    
T  2497660 aaaatgttacataaacaccatttattcatacattccattgtacaccccatatattaaggatattttggtaag 2497589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 206 - 278
Target Start/End: Original strand, 35003294 - 35003366
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaa 278  Q
    |||||||||||||||||||||||||| || ||||| | ||||||||||||||  ||||  |||||||| ||||    
T  35003294 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatacattaaggatattttggtaa 35003366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 264
Target Start/End: Original strand, 41065153 - 41065211
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattag 264  Q
    |||||||||||||||||||||||||| || ||||| |  |||||||||||||| |||||    
T  41065153 ggaaaatgttacatgaacaccctttaatcatacaccctgttgtacaccccatgcattag 41065211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 206 - 263
Target Start/End: Original strand, 14427347 - 14427404
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtatta 263  Q
    |||||||||||||||||||||||||| || ||||| | |||||||||| |||| ||||    
T  14427347 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacacctcatgcatta 14427404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 206 - 263
Target Start/End: Complemental strand, 38113295 - 38113238
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtatta 263  Q
    ||||||||||| |||||||||||||| || ||||| | ||||||||||||||| ||||    
T  38113295 ggaaaatgttatatgaacaccctttaatcatacaccctattgtacaccccatgcatta 38113238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 278
Target Start/End: Original strand, 38335918 - 38335990
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaa 278  Q
    |||||||||||||||||||||||||| || |||||   |||||||| |||||| ||||  |||||||| ||||    
T  38335918 ggaaaatgttacatgaacaccctttaatcatacaccttattgtacatcccatgcattaaggatattttggtaa 38335990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 258
Target Start/End: Original strand, 51898601 - 51898653
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatg 258  Q
    |||||||||||||| ||||||||||||| ||| || || ||||||||||||||    
T  51898601 ggaaaatgttacataaacaccctttatttctatacacccttgtacaccccatg 51898653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 206 - 273
Target Start/End: Complemental strand, 35000213 - 35000146
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatatttt 273  Q
    ||||||||||||||||||||| |||| || ||||||| |||||| ||  |||||||||| || |||||    
T  35000213 ggaaaatgttacatgaacaccttttaatcatacactctattgtatacttcatgtattagggacatttt 35000146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 239
Target Start/End: Original strand, 4888055 - 4888088
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctaca 239  Q
    |||||||||||||||||| |||||||||||||||    
T  4888055 ggaaaatgttacatgaacgccctttattcctaca 4888088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 263
Target Start/End: Original strand, 45705825 - 45705882
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtatta 263  Q
    ||||||||||| |||||||||||||| || |||| || ||||||||| ||||| ||||    
T  45705825 ggaaaatgttatatgaacaccctttaatcatacattctattgtacactccatgcatta 45705882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 278
Target Start/End: Original strand, 46168382 - 46168455
Alignment:
Q  205 gggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaa 278  Q
    ||||||||||||||||||||||||||| || || |  | ||||||||||| ||| ||||  |||||||| ||||    
T  46168382 gggaaaatgttacatgaacaccctttaatcatatatcctattgtacacccaatgcattaaggatattttggtaa 46168455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 278
Target Start/End: Original strand, 26585462 - 26585534
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaa 278  Q
    ||||||||||| |||||||  ||||| || ||||||  ||||||||||||||| ||||  |||||||| ||||    
T  26585462 ggaaaatgttagatgaacattctttaatcatacactatattgtacaccccatgcattaaggatattttagtaa 26585534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 278
Target Start/End: Complemental strand, 45427845 - 45427773
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaa 278  Q
    ||||||||||||||||| ||| |||| || ||||| | ||||||||| ||||| ||||| || ||||| ||||    
T  45427845 ggaaaatgttacatgaataccttttaatcatacaccctattgtacactccatgcattagggacattttggtaa 45427773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 278
Target Start/End: Complemental strand, 45639832 - 45639760
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaa 278  Q
    |||||||||||||||||||| ||||| || ||||  | ||||||||||||||  ||||  |||||||| ||||    
T  45639832 ggaaaatgttacatgaacactctttaatcatacatcctattgtacaccccatacattaaggatattttggtaa 45639760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 207 - 279
Target Start/End: Original strand, 112656 - 112728
Alignment:
Q  207 gaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaag 279  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||| |||||    
T  112656 gaaaatgttacatgaacaccctttattcctacattccattgtacaccctatgtattagggatattttggtaag 112728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 204 - 279
Target Start/End: Complemental strand, 2166065 - 2165990
Alignment:
Q  204 tgggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaag 279  Q
    ||||||||| ||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||| |||||    
T  2166065 tgggaaaatattacatgaacaccatttattcctacaccccattgtataccccatgtattagagatattttggtaag 2165990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 206 - 273
Target Start/End: Original strand, 29705362 - 29705429
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatatttt 273  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||    
T  29705362 ggaaaatgttacatgaacaccctttatttctacaccccattgtacaccccatgtattagggatatttt 29705429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 206 - 279
Target Start/End: Original strand, 2546996 - 2547069
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaag 279  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||||| |||||||| |||||    
T  2546996 ggaaaatgttacatgaacactctttatttctacactccattgtacacctcatgtattagggatattttagtaag 2547069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 206 - 279
Target Start/End: Original strand, 11582766 - 11582839
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaag 279  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||| |||||||| |||||    
T  11582766 ggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaag 11582839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 206 - 279
Target Start/End: Complemental strand, 36743583 - 36743510
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaag 279  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||| |||||||| |||||    
T  36743583 ggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaag 36743510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 208 - 279
Target Start/End: Original strand, 42295197 - 42295268
Alignment:
Q  208 aaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaag 279  Q
    |||||||||||||||||||||||||||||||||  |||||||||| ||||||||||| |||||||| |||||    
T  42295197 aaaatgttacatgaacaccctttattcctacacctcattgtacactccatgtattagggatattttggtaag 42295268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 206 - 279
Target Start/End: Complemental strand, 30660842 - 30660769
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaag 279  Q
    |||||||||||||||||||||||||||| |||||  ||||||||||||| ||||||||| |||||||| |||||    
T  30660842 ggaaaatgttacatgaacaccctttatttctacatcccattgtacaccctatgtattagggatattttggtaag 30660769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 207 - 279
Target Start/End: Original strand, 45397317 - 45397389
Alignment:
Q  207 gaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaag 279  Q
    ||||||||||| |||||||||||||||||||||| ||||| ||||||| ||||||||| |||||||| |||||    
T  45397317 gaaaatgttacgtgaacaccctttattcctacaccccattctacaccctatgtattagggatatttttgtaag 45397389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 208 - 279
Target Start/End: Original strand, 26125637 - 26125708
Alignment:
Q  208 aaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaag 279  Q
    |||||||||||| |||||||||||||| |||| |||||||||||||| ||||||||| |||||||| |||||    
T  26125637 aaaatgttacataaacaccctttattcatacattccattgtacaccctatgtattagggatattttggtaag 26125708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 208 - 279
Target Start/End: Complemental strand, 30912660 - 30912589
Alignment:
Q  208 aaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaag 279  Q
    ||||||||||||||||||||||||||||||||| |||||||||||  |||||||||| | |||||| |||||    
T  30912660 aaaatgttacatgaacaccctttattcctacaccccattgtacacttcatgtattaggggtattttggtaag 30912589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 208 - 279
Target Start/End: Original strand, 42699259 - 42699330
Alignment:
Q  208 aaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaag 279  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||  ||||||||  |||||||| |||||    
T  42699259 aaaatgttacatgaacaccctttattcctacaccccattgtacaccttatgtattatggatatttttgtaag 42699330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 206 - 279
Target Start/End: Original strand, 5754903 - 5754976
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaag 279  Q
    ||||||||||||||||||||| ||||||||||||  |||||||||| ||||| |||||| |||||||| |||||    
T  5754903 ggaaaatgttacatgaacaccttttattcctacatcccattgtacatcccatatattagggatattttggtaag 5754976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 206 - 279
Target Start/End: Complemental strand, 42197535 - 42197462
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaag 279  Q
    ||||||||||||||||||||| ||||||||||||| |||||| |||| | ||||||||| |||||||| |||||    
T  42197535 ggaaaatgttacatgaacaccatttattcctacaccccattgcacacactatgtattagggatattttggtaag 42197462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 206 - 278
Target Start/End: Complemental strand, 18066818 - 18066746
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaa 278  Q
    |||||||||||||||||||||||||| || |||| || |||||||| |||||||||||| |||||||| ||||    
T  18066818 ggaaaatgttacatgaacaccctttaatcatacattctattgtacatcccatgtattagggatattttagtaa 18066746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 208 - 279
Target Start/End: Complemental strand, 29801048 - 29800977
Alignment:
Q  208 aaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaag 279  Q
    |||||||||||| |||||| ||||||| ||||  ||||||||||||||||||||||| |||||||| |||||    
T  29801048 aaaatgttacataaacaccatttattcatacatcccattgtacaccccatgtattagggatattttggtaag 29800977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 214 - 279
Target Start/End: Original strand, 31384672 - 31384737
Alignment:
Q  214 ttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaag 279  Q
    ||||||||||||||||||||| |||| || |||||||||||||||||||||  ||||||| |||||    
T  31384672 ttacatgaacaccctttattcttacattctattgtacaccccatgtattaggaatattttggtaag 31384737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 206 - 278
Target Start/End: Original strand, 1375542 - 1375614
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaa 278  Q
    ||||||| ||||||||||||| ||||||| ||||| | |||||||||||||| |||||| |||||||| ||||    
T  1375542 ggaaaattttacatgaacaccttttattcatacacccaattgtacaccccatatattagggatattttggtaa 1375614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 206 - 278
Target Start/End: Original strand, 35181516 - 35181588
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaa 278  Q
    |||||||||||||||||||||||||| || ||||| | ||||||||||||||| ||||| || ||||| ||||    
T  35181516 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggtaa 35181588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 208 - 279
Target Start/End: Original strand, 20148762 - 20148833
Alignment:
Q  208 aaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaag 279  Q
    |||||||||||| |||||||||||||| ||||  |||||||||||| ||| |||||| |||||||| |||||    
T  20148762 aaaatgttacataaacaccctttattcatacatcccattgtacacctcatatattagggatattttggtaag 20148833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 206 - 278
Target Start/End: Original strand, 34304788 - 34304860
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaa 278  Q
    ||||||||||||||||||| |||||| || ||||| | ||||||||||||||| ||||| || ||||| ||||    
T  34304788 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattagggacattttggtaa 34304860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 240
Target Start/End: Original strand, 28977146 - 28977180
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacac 240  Q
    |||||||||||||||||||||||||||||||||||    
T  28977146 ggaaaatgttacatgaacaccctttattcctacac 28977180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 258
Target Start/End: Complemental strand, 37038661 - 37038609
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatg 258  Q
    |||||||||||||| ||||||||||||| ||| || || ||||||||||||||    
T  37038661 ggaaaatgttacataaacaccctttatttctatacacccttgtacaccccatg 37038609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 278
Target Start/End: Complemental strand, 33630091 - 33630021
Alignment:
Q  208 aaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaa 278  Q
    ||||||||||| |||||||||||| || |||||  |||||||||||| ||| ||||| || ||||| ||||    
T  33630091 aaaatgttacacgaacaccctttaatcatacacctcattgtacaccctatgcattagggacattttagtaa 33630021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 278
Target Start/End: Complemental strand, 16603726 - 16603654
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaa 278  Q
    ||||||||||||||| |||||||||| || |||||   ||| ||||||||||| |||| ||| ||||| ||||    
T  16603726 ggaaaatgttacatgcacaccctttaatcatacaccttattatacaccccatgcattaaagacattttggtaa 16603654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 204 - 279
Target Start/End: Original strand, 42972850 - 42972925
Alignment:
Q  204 tgggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaag 279  Q
    |||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||| |||||||| |||||    
T  42972850 tgggaaaatgttacctgaacatcctttattcctacactccattgtacacctcatgtattagggatattttggtaag 42972925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 206 - 279
Target Start/End: Original strand, 5015395 - 5015468
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaag 279  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||||| |||||||| |||||    
T  5015395 ggaaaatgttacatgaacactctttatttctacactccattgtacacctcatgtattagggatattttggtaag 5015468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 206 - 279
Target Start/End: Complemental strand, 24001112 - 24001039
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaag 279  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||| |||||||| |||||    
T  24001112 ggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaag 24001039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 206 - 279
Target Start/End: Complemental strand, 42538531 - 42538458
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaag 279  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||| |||||||| |||||    
T  42538531 ggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaag 42538458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 206 - 279
Target Start/End: Original strand, 35069721 - 35069794
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaag 279  Q
    |||||||||||||||||||| ||||||||||||||  ||||||||||| |||||||||| |||||||| |||||    
T  35069721 ggaaaatgttacatgaacactctttattcctacacctcattgtacacctcatgtattagggatattttggtaag 35069794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 206 - 273
Target Start/End: Complemental strand, 5811024 - 5810957
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatatttt 273  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||| || |||||| ||||||||    
T  5811024 ggaaaatgttacatgaccaccctttattcctacaccccattgtacaccctatatattagggatatttt 5810957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 208 - 279
Target Start/End: Complemental strand, 4638297 - 4638226
Alignment:
Q  208 aaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaag 279  Q
    ||||||||||||||||||| ||||||| ||||||| |||||||||||||| |||||  |||||||| |||||    
T  4638297 aaaatgttacatgaacaccttttattcatacactcaattgtacaccccatatattatggatattttggtaag 4638226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 206 - 279
Target Start/End: Original strand, 9216302 - 9216374
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaag 279  Q
    |||||||||||||||||||||||||||||||| |  | |||||||| |||||| |||||||||||||| |||||    
T  9216302 ggaaaatgttacatgaacaccctttattcctatatcctattgtaca-cccatgcattagagatattttggtaag 9216374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 208 - 273
Target Start/End: Complemental strand, 43343722 - 43343657
Alignment:
Q  208 aaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatatttt 273  Q
    ||||||||||||||||| | |||||| |||||| | ||||||||||||||||||||| ||||||||    
T  43343722 aaaatgttacatgaacatcatttatttctacaccctattgtacaccccatgtattagggatatttt 43343657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 208 - 273
Target Start/End: Complemental strand, 44417032 - 44416967
Alignment:
Q  208 aaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatatttt 273  Q
    ||||||||||||||||| | |||||| |||||| | ||||||||||||||||||||| ||||||||    
T  44417032 aaaatgttacatgaacatcatttatttctacaccctattgtacaccccatgtattagggatatttt 44416967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 206 - 278
Target Start/End: Complemental strand, 27535331 - 27535259
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaa 278  Q
    |||||||||||||||||||||||||| || ||||||| ||||||||| |||||| ||| ||| ||||| ||||    
T  27535331 ggaaaatgttacatgaacaccctttaatcatacactctattgtacactccatgtgttaaagacattttggtaa 27535259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 206 - 279
Target Start/End: Original strand, 41861674 - 41861749
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtat--tagagatattttcgtaag 279  Q
    ||||||||||||||||||||||||||||| ||||| | ||| ||||||| ||||||  |||||||||||| |||||    
T  41861674 ggaaaatgttacatgaacaccctttattcatacacccaattatacaccctatgtattatagagatattttggtaag 41861749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 207 - 278
Target Start/End: Complemental strand, 31408732 - 31408661
Alignment:
Q  207 gaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaa 278  Q
    ||||||||||||||||||||||||| || ||||||| |||||||| |||||| ||||  |||||||| ||||    
T  31408732 gaaaatgttacatgaacaccctttaatcatacactctattgtacatcccatgcattaaggatattttggtaa 31408661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 215 - 278
Target Start/End: Complemental strand, 32029908 - 32029845
Alignment:
Q  215 tacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaa 278  Q
    ||||| |||||  ||||||||||||| ||||||||||||||||||||||| |||||||| ||||    
T  32029908 tacataaacactttttattcctacaccccattgtacaccccatgtattagggatattttggtaa 32029845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 208 - 279
Target Start/End: Original strand, 44326180 - 44326251
Alignment:
Q  208 aaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaag 279  Q
    |||||||||||| |||||||||||||| ||||  |||||||||||| ||| |||||| |||||||| |||||    
T  44326180 aaaatgttacataaacaccctttattcatacatcccattgtacacctcatatattagggatattttggtaag 44326251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 208 - 278
Target Start/End: Original strand, 10573751 - 10573821
Alignment:
Q  208 aaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaa 278  Q
    |||||||||||| |||||||||||||| ||||  | |||||||||||||||||||||  ||||||| ||||    
T  10573751 aaaatgttacataaacaccctttattcatacatcctattgtacaccccatgtattaggaatattttggtaa 10573821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 208 - 278
Target Start/End: Complemental strand, 16180454 - 16180385
Alignment:
Q  208 aaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaa 278  Q
    |||||||||||| |||||| ||||||||||||| ||||||||||||||| |||||| | ||||||| ||||    
T  16180454 aaaatgttacatcaacaccatttattcctacac-ccattgtacaccccacgtattataaatattttggtaa 16180385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 209 - 279
Target Start/End: Complemental strand, 26898499 - 26898429
Alignment:
Q  209 aaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaag 279  Q
    |||||||||||||||||| ||||||| ||||| | ||||||||  ||||||||||| |||||||| |||||    
T  26898499 aaatgttacatgaacaccttttattcatacacccaattgtacattccatgtattagggatattttggtaag 26898429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 229 - 278
Target Start/End: Complemental strand, 38160656 - 38160607
Alignment:
Q  229 ttattcctacactccattgtacaccccatgtattagagatattttcgtaa 278  Q
    |||||| ||||||||||||||||||||||||||||| |||||||| ||||    
T  38160656 ttattcttacactccattgtacaccccatgtattagggatattttagtaa 38160607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 206 - 274
Target Start/End: Original strand, 39998408 - 39998476
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttc 274  Q
    ||||||||||||||||||||  |||| || ||||  | ||||||||||||||||||||| |||||||||    
T  39998408 ggaaaatgttacatgaacacattttaatcatacatcctattgtacaccccatgtattagggatattttc 39998476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 206 - 278
Target Start/End: Original strand, 40236919 - 40236991
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaa 278  Q
    |||||||||||||||||||||||||| || ||||  | ||||||||||||||| ||||| || ||||| ||||    
T  40236919 ggaaaatgttacatgaacaccctttaatcatacatcctattgtacaccccatgcattagggacattttggtaa 40236991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 206 - 273
Target Start/End: Complemental strand, 5194331 - 5194264
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatatttt 273  Q
    ||||||||||||||||||||| ||||||| |||||  |||||||||||| |||| |||  ||||||||    
T  5194331 ggaaaatgttacatgaacaccatttattcatacacctcattgtacaccctatgttttaaggatatttt 5194264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 206 - 239
Target Start/End: Complemental strand, 38160694 - 38160661
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctaca 239  Q
    ||||||||||||||||||||||||||||||||||    
T  38160694 ggaaaatgttacatgaacaccctttattcctaca 38160661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 206 - 279
Target Start/End: Original strand, 45326020 - 45326093
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaag 279  Q
    ||||| |||||||| |||||| ||||||| ||||   ||||||||||||||| |||||| |||||||| |||||    
T  45326020 ggaaagtgttacataaacaccttttattcatacatcacattgtacaccccatatattagggatattttggtaag 45326093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 278
Target Start/End: Complemental strand, 24280696 - 24280624
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaa 278  Q
    |||||||||||| |||||||||||||||| ||||| | ||| |||| |||||| | |||| ||||||| ||||    
T  24280696 ggaaaatgttacgtgaacaccctttattcatacaccctattctacatcccatgcactagaaatattttggtaa 24280624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 278
Target Start/End: Original strand, 31513287 - 31513359
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaa 278  Q
    |||||||||||||||||||| ||||| || ||||| | |||||| |||||||| ||||  |||||||| ||||    
T  31513287 ggaaaatgttacatgaacactctttaatcatacaccctattgtataccccatgcattaaggatattttggtaa 31513359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 204 - 279
Target Start/End: Complemental strand, 27393361 - 27393287
Alignment:
Q  204 tgggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaag 279  Q
    |||||||||| ||||| | |||||||||||||||||  | ||||||||| | ||||||||| |||||||| |||||    
T  27393361 tgggaaaatgctacatca-caccctttattcctacatcctattgtacactctatgtattagggatatttttgtaag 27393287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 206 - 273
Target Start/End: Original strand, 43317443 - 43317510
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatatttt 273  Q
    ||||||||||||||||||||| ||||||| |||||  ||||||||| || |||  |||| ||||||||    
T  43317443 ggaaaatgttacatgaacaccatttattcatacacctcattgtacatcctatgctttagggatatttt 43317510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 259
Target Start/End: Complemental strand, 47279797 - 47279744
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgt 259  Q
    ||||||| |||||| || ||||||||||| ||||  ||||||||||||||||||    
T  47279797 ggaaaatattacataaataccctttattcatacatcccattgtacaccccatgt 47279744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 258
Target Start/End: Complemental strand, 41423864 - 41423812
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatg 258  Q
    |||||||||||||| ||||||||||||||  | || || ||||||||||||||    
T  41423864 ggaaaatgttacataaacaccctttattctcatacacctttgtacaccccatg 41423812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 206 - 279
Target Start/End: Original strand, 685 - 758
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaag 279  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||| |||||||||| |||||||| |||||    
T  685 ggaaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtattagggatattttggtaag 758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 206 - 279
Target Start/End: Complemental strand, 14288 - 14215
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaag 279  Q
    |||||||||||||||||||||||||||| |||||| |||||||||| || ||||||||| |||||||| |||||    
T  14288 ggaaaatgttacatgaacaccctttatttctacaccccattgtacatcctatgtattagggatatttttgtaag 14215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 206 - 279
Target Start/End: Complemental strand, 24616 - 24543
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaag 279  Q
    |||||||||||||||||||||||||||| |||||| |||||||||| || ||||||||| |||||||| |||||    
T  24616 ggaaaatgttacatgaacaccctttatttctacaccccattgtacatcctatgtattagggatatttttgtaag 24543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 206 - 279
Target Start/End: Original strand, 11251 - 11324
Alignment:
Q  206 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaag 279  Q
    ||||||||| |||||||||| |||||||| ||||| |||||||||||||||| |||||| |||||||| |||||    
T  11251 ggaaaatgtcacatgaacacactttattcatacaccccattgtacaccccatatattagggatattttggtaag 11324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 278
Target Start/End: Complemental strand, 45817 - 45747
Alignment:
Q  208 aaaatgttacatgaacaccctttattcctacactccattgtacaccccatgtattagagatattttcgtaa 278  Q
    |||||||||||||||||||||||| || ||||| | |||||||| || ||||||||  |||||||| ||||    
T  45817 aaaatgttacatgaacaccctttaatcatacaccctattgtacatcctatgtattaaggatattttggtaa 45747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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