View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3376-Insertion-15 (Length: 216)

Name: NF3376-Insertion-15
Description: NF3376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3376-Insertion-15
NF3376-Insertion-15
[»] chr8 (11 HSPs)
chr8 (8-216)||(13231804-13232013)
chr8 (42-118)||(2623238-2623314)
chr8 (49-107)||(41456063-41456121)
chr8 (50-115)||(13231481-13231546)
chr8 (27-104)||(278966-279043)
chr8 (27-104)||(636809-636886)
chr8 (27-104)||(822612-822689)
chr8 (22-106)||(279733-279816)
chr8 (22-106)||(636036-636119)
chr8 (22-106)||(821839-821922)
chr8 (45-118)||(33231128-33231201)
[»] chr4 (10 HSPs)
chr4 (27-115)||(12007480-12007568)
chr4 (57-149)||(12007921-12008009)
chr4 (42-106)||(32641203-32641267)
chr4 (29-108)||(26305567-26305646)
chr4 (27-106)||(50072000-50072079)
chr4 (27-118)||(2486925-2487017)
chr4 (52-107)||(5474862-5474917)
chr4 (29-80)||(26439911-26439962)
chr4 (42-86)||(39484384-39484428)
chr4 (27-87)||(50071298-50071358)
[»] chr1 (7 HSPs)
chr1 (27-131)||(44634036-44634140)
chr1 (27-118)||(27573559-27573650)
chr1 (27-118)||(27702581-27702672)
chr1 (57-128)||(28652471-28652541)
chr1 (27-116)||(25476058-25476147)
chr1 (57-108)||(28651715-28651766)
chr1 (78-127)||(27576898-27576947)
[»] chr5 (8 HSPs)
chr5 (27-106)||(17115735-17115814)
chr5 (27-131)||(24153202-24153306)
chr5 (27-131)||(24153945-24154049)
chr5 (60-117)||(29108110-29108166)
chr5 (27-89)||(35145617-35145679)
chr5 (28-87)||(17116461-17116520)
chr5 (27-82)||(29108704-29108759)
chr5 (27-131)||(31079722-31079826)
[»] chr2 (7 HSPs)
chr2 (27-131)||(35063617-35063721)
chr2 (42-120)||(35064406-35064484)
chr2 (60-106)||(41714118-41714164)
chr2 (47-116)||(40056338-40056407)
chr2 (32-131)||(38356847-38356946)
chr2 (42-108)||(27060341-27060407)
chr2 (60-116)||(29453651-29453707)
[»] chr3 (2 HSPs)
chr3 (42-128)||(45005511-45005597)
chr3 (27-116)||(45146665-45146754)
[»] scaffold0301 (1 HSPs)
scaffold0301 (30-82)||(7857-7909)
[»] chr7 (3 HSPs)
chr7 (42-95)||(21516209-21516262)
chr7 (42-95)||(21516432-21516485)
chr7 (42-95)||(21516655-21516708)


Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 8 - 216
Target Start/End: Original strand, 13231804 - 13232013
Alignment:
Q  8 tcaagtacatgatgacaatgggaggtgtttgtgcatttgatgagaactaaagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcatttt 107  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  13231804 tcaagtaaatgatgacaatgggaggtgtttgtgcatttgatgagaactaaagggaggttagtgtaagttttaaaattagagggggtgtcagtgtcatttt 13231903  T
Q  108 agtaaaccttaagtgaggtgagtgactgtaattttcccttaaaataaaatgaaacctaacataaatgtaaggacaaaatacagaattaggccaaaa-tgt 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  13231904 agtaaaccttaagtgaggtgagtgactgtaattttcccttaaaataaaatgaaacctaacataaatgtaaggacaaaatacagaattaggccaaaattgt 13232003  T
Q  207 atttcgttaa 216  Q
     |||||||||    
T  13232004 gtttcgttaa 13232013  T

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Target: chr8; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 42 - 118
Target Start/End: Original strand, 2623238 - 2623314
Alignment:
Q  42 atttgatgagaactaaagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcattttagtaaacctta 118  Q
    ||||||||| |||| ||||||||||||||||||||||||||||||| | | |||||||||||||||| |||||||||    
T  2623238 atttgatgaaaactcaagggaggttagtgtaagttttaaaattagatgggatgtcagtgtcattttaataaacctta 2623314  T

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Target: chr8; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 49 - 107
Target Start/End: Original strand, 41456063 - 41456121
Alignment:
Q  49 gagaactaaagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcatttt 107  Q
    ||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||    
T  41456063 gagaacttaagggaggttagtgtaagtttaaaaattagaggagatgtcagtgtcatttt 41456121  T

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Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 50 - 115
Target Start/End: Complemental strand, 13231546 - 13231481
Alignment:
Q  50 agaactaaagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcattttagtaaacc 115  Q
    ||||||||||||||||||||| |||||||||||||| ||  | ||| |||||||||||||||||||    
T  13231546 agaactaaagggaggttagtgaaagttttaaaattaaagaggatgtaagtgtcattttagtaaacc 13231481  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 104
Target Start/End: Complemental strand, 279043 - 278966
Alignment:
Q  27 gggaggtgtttgtgcatttgatgagaactaaagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcat 104  Q
    |||||||||||||  ||||||| | |||| ||||||| ||| |||||||||||||| || ||| | ||||||||||||    
T  279043 gggaggtgtttgtcaatttgataaaaacttaagggagattaatgtaagttttaaaactaaaggggatgtcagtgtcat 278966  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 104
Target Start/End: Original strand, 636809 - 636886
Alignment:
Q  27 gggaggtgtttgtgcatttgatgagaactaaagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcat 104  Q
    |||||||||||||  ||||||| | |||| ||||||| ||| |||||||||||||| || ||| | ||||||||||||    
T  636809 gggaggtgtttgtcaatttgataaaaacttaagggagattaatgtaagttttaaaactaaaggggatgtcagtgtcat 636886  T

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Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 104
Target Start/End: Original strand, 822612 - 822689
Alignment:
Q  27 gggaggtgtttgtgcatttgatgagaactaaagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcat 104  Q
    |||||||||||||  ||||||| | |||| ||||||| ||| |||||||||||||| || ||| | ||||||||||||    
T  822612 gggaggtgtttgtcaatttgataaaaacttaagggagattaatgtaagttttaaaactaaaggggatgtcagtgtcat 822689  T

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Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 106
Target Start/End: Original strand, 279733 - 279816
Alignment:
Q  22 acaatgggaggtgtttgtgcatttgatgagaactaaagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcattt 106  Q
    |||| ||||||||||| |  | ||||||| |||| || ||||||||| |||||||||||||||||||| |||||  |||||||||    
T  279733 acaaagggaggtgtttttctaattgatgaaaacttaaaggaggttagcgtaagttttaaaattagagg-ggtgtatgtgtcattt 279816  T

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Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 106
Target Start/End: Complemental strand, 636119 - 636036
Alignment:
Q  22 acaatgggaggtgtttgtgcatttgatgagaactaaagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcattt 106  Q
    |||| ||||||||||| |  | ||||||| |||| || ||||||||| |||||||||||||||||||| |||||  |||||||||    
T  636119 acaaagggaggtgtttttctaattgatgaaaacttaaaggaggttagcgtaagttttaaaattagagg-ggtgtatgtgtcattt 636036  T

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Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 106
Target Start/End: Complemental strand, 821922 - 821839
Alignment:
Q  22 acaatgggaggtgtttgtgcatttgatgagaactaaagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcattt 106  Q
    |||| ||||||||||| |  | ||||||| |||| || ||||||||| |||||||||||||||||||| |||||  |||||||||    
T  821922 acaaagggaggtgtttttctaattgatgaaaacttaaaggaggttagcgtaagttttaaaattagagg-ggtgtatgtgtcattt 821839  T

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Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 45 - 118
Target Start/End: Complemental strand, 33231201 - 33231128
Alignment:
Q  45 tgatgagaactaaagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcattttagtaaacctta 118  Q
    |||||| |||||||||||||||  || | |||||||||||||||| | ||  |||||||||||| || ||||||    
T  33231201 tgatgaaaactaaagggaggtttatgcatgttttaaaattagaggggatgctagtgtcattttaatagacctta 33231128  T

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Target: chr4 (Bit Score: 61; Significance: 2e-26; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 27 - 115
Target Start/End: Complemental strand, 12007568 - 12007480
Alignment:
Q  27 gggaggtgtttgtgcatttgatgagaactaaagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcattttagtaaacc 115  Q
    |||||||||||||| |||||||||||||| ||| ||||||| |||| ||||||||| |||||| |||||||||||||||||||||||||    
T  12007568 gggaggtgtttgtgtatttgatgagaacttaagtgaggttaatgtatgttttaaaactagagggggtgtcagtgtcattttagtaaacc 12007480  T

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Target: chr4; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 57 - 149
Target Start/End: Original strand, 12007921 - 12008009
Alignment:
Q  57 aagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcattttagtaaaccttaagtgaggtgagtgactgtaattttcccttaa 149  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| | |||||| |    ||||||||||||||||    
T  12007921 aagggaggttagtgtaagttttaaaattagagggggtgtcagtgtcattttagtaaatcttaggggaggtgtg----tgtaattttcccttaa 12008009  T

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Target: chr4; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 42 - 106
Target Start/End: Complemental strand, 32641267 - 32641203
Alignment:
Q  42 atttgatgagaactaaagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcattt 106  Q
    |||| ||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||    
T  32641267 attttatgagaacttaagggatgttagtgtaatttttaaaattagaggaggtgtcagtgtcattt 32641203  T

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Target: chr4; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 29 - 108
Target Start/End: Complemental strand, 26305646 - 26305567
Alignment:
Q  29 gaggtgtttgtgcatttgatgagaactaaagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcatttta 108  Q
    ||||||||||| |||||||| | || | | ||||| ||| |||||||||||||||||||||||||||| |||||||||||    
T  26305646 gaggtgtttgtccatttgataaaaatttatgggagattaatgtaagttttaaaattagaggaggtgtcggtgtcatttta 26305567  T

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Target: chr4; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 27 - 106
Target Start/End: Original strand, 50072000 - 50072079
Alignment:
Q  27 gggaggtgtttgtgcatttgatgagaactaaagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcattt 106  Q
    ||||| |||||||  |||||||||||||| |||||||||| ||||||||||||||| || ||| ||||| ||||||||||    
T  50072000 gggagatgtttgtatatttgatgagaacttaagggaggtttgtgtaagttttaaaactaaagggggtgttagtgtcattt 50072079  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 118
Target Start/End: Original strand, 2486925 - 2487017
Alignment:
Q  27 gggaggtgtttgtgcatttgatgagaact-aaagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcattttagtaaacctta 118  Q
    |||||||||||||   |||||||||| || |||||||  ||||||| |||||||||| |||| | |||||||||||| ||||| || ||||||    
T  2486925 gggaggtgtttgtatttttgatgagagcttaaagggacattagtgttagttttaaaactagaaggggtgtcagtgtcgttttaatagacctta 2487017  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 107
Target Start/End: Original strand, 5474862 - 5474917
Alignment:
Q  52 aactaaagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcatttt 107  Q
    |||| |||||||||| |||||||||||||||| ||||| | ||| |||||||||||    
T  5474862 aacttaagggaggttggtgtaagttttaaaataagaggggttgttagtgtcatttt 5474917  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 80
Target Start/End: Complemental strand, 26439962 - 26439911
Alignment:
Q  29 gaggtgtttgtgcatttgatgagaactaaagggaggttagtgtaagttttaa 80  Q
    |||||||||||| |||||||||||| | ||||||| ||| ||||||||||||    
T  26439962 gaggtgtttgtgtatttgatgagaatttaagggagattattgtaagttttaa 26439911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 86
Target Start/End: Complemental strand, 39484428 - 39484384
Alignment:
Q  42 atttgatgagaactaaagggaggttagtgtaagttttaaaattag 86  Q
    |||| |||||||||  |||||||| ||||||||||||||||||||    
T  39484428 atttcatgagaacttgagggaggtaagtgtaagttttaaaattag 39484384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 87
Target Start/End: Complemental strand, 50071358 - 50071298
Alignment:
Q  27 gggaggtgtttgtgcatttgatgagaactaaagggaggttagtgtaagttttaaaattaga 87  Q
    |||| ||||||||| ||||||||| | || ||||||||||||||| | |||||||| ||||    
T  50071358 gggaagtgtttgtgtatttgatgaaagcttaagggaggttagtgttaattttaaaactaga 50071298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 3e-19; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 27 - 131
Target Start/End: Original strand, 44634036 - 44634140
Alignment:
Q  27 gggaggtgtttgtgcatttgatgagaactaaagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcattttagtaaaccttaagtgaggt 126  Q
    |||||||| ||||  |||||||||||||| |||||||||| || |  ||||||||| |||||| ||||||| |||||||||||||||| ||| | |||||    
T  44634036 gggaggtgattgtatatttgatgagaacttaagggaggttggtatttgttttaaaactagagggggtgtcaatgtcattttagtaaactttaggggaggt 44634135  T
Q  127 gagtg 131  Q
    |||||    
T  44634136 gagtg 44634140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 27 - 118
Target Start/End: Complemental strand, 27573650 - 27573559
Alignment:
Q  27 gggaggtgtttgtgcatttgatgagaactaaagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcattttagtaaacctta 118  Q
    |||| ||| |||| ||||||||||||| | |||||||||| ||||||||||||||| |||  | ||||||| | ||||||||||||||||||    
T  27573650 gggaagtgcttgtacatttgatgagaatttaagggaggttggtgtaagttttaaaactagtcggggtgtcaatatcattttagtaaacctta 27573559  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 27 - 118
Target Start/End: Complemental strand, 27702672 - 27702581
Alignment:
Q  27 gggaggtgtttgtgcatttgatgagaactaaagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcattttagtaaacctta 118  Q
    |||||||||||||  ||||||| | |||| |||||| |||||||||| ||||||||||| ||  | |||||||||||||||| |||||||||    
T  27702672 gggaggtgtttgtctatttgataaaaactcaagggaagttagtgtaaattttaaaattatagtggatgtcagtgtcattttaataaacctta 27702581  T

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Target: chr1; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 57 - 128
Target Start/End: Original strand, 28652471 - 28652541
Alignment:
Q  57 aagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcattttagtaaaccttaagtgaggtga 128  Q
    |||||||||||||||||||||||||| |||||| ||||||| ||| |||||||||||||| ||| |||||||    
T  28652471 aagggaggttagtgtaagttttaaaaatagagg-ggtgtcaatgttattttagtaaacctcaagggaggtga 28652541  T

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Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 27 - 116
Target Start/End: Original strand, 25476058 - 25476147
Alignment:
Q  27 gggaggtgtttgtgcatttgatgagaactaaagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcattttagtaaacct 116  Q
    |||||||||||||  |||| || | ||||  ||||||||| ||||||||||||||| ||||||  ||||||||||||||||| |||||||    
T  25476058 gggaggtgtttgtttatttcataaaaacttgagggaggttcgtgtaagttttaaaactagagggagtgtcagtgtcattttaataaacct 25476147  T

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Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 57 - 108
Target Start/End: Complemental strand, 28651766 - 28651715
Alignment:
Q  57 aagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcatttta 108  Q
    ||||||||||| |||||||||||||| |||||| ||||||||||||||||||    
T  28651766 aagggaggttaatgtaagttttaaaaatagagggggtgtcagtgtcatttta 28651715  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 78 - 127
Target Start/End: Original strand, 27576898 - 27576947
Alignment:
Q  78 taaaattagaggaggtgtcagtgtcattttagtaaaccttaagtgaggtg 127  Q
    ||||| |||||| | |||||||||||||||||||||||||| | ||||||    
T  27576898 taaaactagaggggatgtcagtgtcattttagtaaaccttaggggaggtg 27576947  T

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Target: chr5 (Bit Score: 44; Significance: 3e-16; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 27 - 106
Target Start/End: Complemental strand, 17115814 - 17115735
Alignment:
Q  27 gggaggtgtttgtgcatttgatgagaactaaagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcattt 106  Q
    ||||| |||||||  |||||||||||||| |||||||||| ||||||||||||||| |||||  ||||| ||||||||||    
T  17115814 gggagatgtttgtatatttgatgagaacttaagggaggttggtgtaagttttaaaactagagttggtgttagtgtcattt 17115735  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 27 - 131
Target Start/End: Complemental strand, 24153306 - 24153202
Alignment:
Q  27 gggaggtgtttgtgcatttgatgagaactaaagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcattttagtaaaccttaagtgaggt 126  Q
    ||||||||||||| ||||| || |||||| ||||||||||||||| | |||||||| |||||  |||||| || |||||||| || |||| |||  ||||    
T  24153306 gggaggtgtttgtccatttcattagaacttaagggaggttagtgttacttttaaaactagagtgggtgtctgtctcattttaatagacctcaaggaaggt 24153207  T
Q  127 gagtg 131  Q
    |||||    
T  24153206 gagtg 24153202  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 27 - 131
Target Start/End: Original strand, 24153945 - 24154049
Alignment:
Q  27 gggaggtgtttgtgcatttgatgagaactaaagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcattttagtaaaccttaagtgaggt 126  Q
    |||||||||||||  |||||||   |||| ||||||||||| ||| |||||||||| |||||| ||| | | |||||||||| ||||||||| | |||||    
T  24153945 gggaggtgtttgtttatttgatagaaacttaagggaggttaatgttagttttaaaactagagggggtctaactgtcattttaataaaccttaggggaggt 24154044  T
Q  127 gagtg 131  Q
    |||||    
T  24154045 gagtg 24154049  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 60 - 117
Target Start/End: Complemental strand, 29108166 - 29108110
Alignment:
Q  60 ggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcattttagtaaacctt 117  Q
    ||||||||||||||||||||||| |||||| ||||| ||||||||||| |||||||||    
T  29108166 ggaggttagtgtaagttttaaaactagagg-ggtgttagtgtcatttttgtaaacctt 29108110  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 27 - 89
Target Start/End: Complemental strand, 35145679 - 35145617
Alignment:
Q  27 gggaggtgtttgtgcatttgatgagaactaaagggaggttagtgtaagttttaaaattagagg 89  Q
    |||| ||||||||  |||| |||||||||  ||||||||||||||||||||||||| ||||||    
T  35145679 gggatgtgtttgtctattttatgagaactcgagggaggttagtgtaagttttaaaactagagg 35145617  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 87
Target Start/End: Original strand, 17116461 - 17116520
Alignment:
Q  28 ggaggtgtttgtgcatttgatgagaactaaagggaggttagtgtaagttttaaaattaga 87  Q
    ||||||||||||| ||||||||| | || || |||||||||||| |||||||||| ||||    
T  17116461 ggaggtgtttgtgtatttgatgaaagcttaaaggaggttagtgttagttttaaaactaga 17116520  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 82
Target Start/End: Original strand, 29108704 - 29108759
Alignment:
Q  27 gggaggtgtttgtgcatttgatgagaactaaagggaggttagtgtaagttttaaaa 82  Q
    |||||||||||||  ||||| | | |||| ||||||||||||||||||||||||||    
T  29108704 gggaggtgtttgtatatttgttaaaaactcaagggaggttagtgtaagttttaaaa 29108759  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 131
Target Start/End: Original strand, 31079722 - 31079826
Alignment:
Q  27 gggaggtgtttgtgcatttgatgagaactaaagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcattttagtaaaccttaagtgaggt 126  Q
    |||| ||||||||  ||||| ||| |||  ||||||||||| |||   |||||||| ||||| |||||| |||| ||||||| ||||||||| | |||||    
T  31079722 gggatgtgtttgtctatttgctgaaaacctaagggaggttaatgttcattttaaaactagagaaggtgttagtgccattttaataaaccttaggggaggt 31079821  T
Q  127 gagtg 131  Q
     ||||    
T  31079822 aagtg 31079826  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 27 - 131
Target Start/End: Complemental strand, 35063721 - 35063617
Alignment:
Q  27 gggaggtgtttgtgcatttgatgagaactaaagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcattttagtaaaccttaagtgaggt 126  Q
    ||||| |||||||  |||| || | |||| ||||||||||  |||||||||||||| ||||||  ||||||||| ||||||| ||||||| ||| |||||    
T  35063721 gggagatgtttgtctatttcataaaaacttaagggaggttcatgtaagttttaaaactagagggagtgtcagtgacattttaataaacctcaagggaggt 35063622  T
Q  127 gagtg 131  Q
    |||||    
T  35063621 gagtg 35063617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 42 - 120
Target Start/End: Original strand, 35064406 - 35064484
Alignment:
Q  42 atttgatgagaactaaagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcattttagtaaaccttaag 120  Q
    |||||||||||| | |||||| |||||||| |||||||||| |||||| | ||| |||||||||||| ||||| |||||    
T  35064406 atttgatgagaatttaagggaagttagtgtgagttttaaaactagaggggatgttagtgtcattttaataaactttaag 35064484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 60 - 106
Target Start/End: Complemental strand, 41714164 - 41714118
Alignment:
Q  60 ggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcattt 106  Q
    |||||||||||||||||||||||||||||||| |||  |||||||||    
T  41714164 ggaggttagtgtaagttttaaaattagaggagatgttggtgtcattt 41714118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 116
Target Start/End: Complemental strand, 40056407 - 40056338
Alignment:
Q  47 atgagaactaaagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcattttagtaaacct 116  Q
    ||||||||| ||||||||||| |||||||||| ||| |||| | ||||| |||||||||||  |||||||    
T  40056407 atgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcattttcataaacct 40056338  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 131
Target Start/End: Complemental strand, 38356946 - 38356847
Alignment:
Q  32 gtgtttgtgcatttgatgagaactaaagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcattttagtaaaccttaagtgaggtgagtg 131  Q
    ||||||||  ||||||| | |||| ||||||||||| |||| ||||||||| |||||| |||||  ||||||| ||| || |||| | | ||||||||||    
T  38356946 gtgtttgtatatttgattaaaacttaagggaggttaatgtatgttttaaaactagagggggtgtttgtgtcatattaatagacctcaggggaggtgagtg 38356847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 108
Target Start/End: Complemental strand, 27060407 - 27060341
Alignment:
Q  42 atttgatgagaactaaagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcatttta 108  Q
    ||||||||||| || |||||| |||||| | |||||||||| |||||||| ||| ||||||| ||||    
T  27060407 atttgatgagagcttaagggatgttagtattagttttaaaactagaggagatgttagtgtcaattta 27060341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 29453651 - 29453707
Alignment:
Q  60 ggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcattttagtaaacct 116  Q
    |||||||| ||||||||| |||| |||||||||||| ||||| |||||  |||||||    
T  29453651 ggaggttaatgtaagtttcaaaactagaggaggtgttagtgttattttcataaacct 29453707  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 42 - 128
Target Start/End: Original strand, 45005511 - 45005597
Alignment:
Q  42 atttgatgagaactaaagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcattttagtaaaccttaagtgaggtga 128  Q
    |||||||||||||| ||||||| | ||||| |||||||||| ||| |||  ||| |||||||||||| ||||||| ||| |||||||    
T  45005511 atttgatgagaacttaagggagatcagtgtgagttttaaaactagtggaaatgttagtgtcattttaataaacctcaagggaggtga 45005597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 116
Target Start/End: Original strand, 45146665 - 45146754
Alignment:
Q  27 gggaggtgtttgtgcatttgatgagaactaaagggaggttagtgtaagttttaaaattagaggaggtgtcagtgtcattttagtaaacct 116  Q
    |||||||||||||  |||| || |||||  ||||||||||||||| ||||||||||||||| | | |||  ||||||||||| |||||||    
T  45146665 gggaggtgtttgtctatttcattagaacataagggaggttagtgttagttttaaaattagaagggatgtttgtgtcattttaataaacct 45146754  T

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Target: scaffold0301 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0301
Description:

Target: scaffold0301; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 82
Target Start/End: Complemental strand, 7909 - 7857
Alignment:
Q  30 aggtgtttgtgcatttgatgagaactaaagggaggttagtgtaagttttaaaa 82  Q
    ||||||||||| |||||||||||||| ||| ||| |||||||| |||||||||    
T  7909 aggtgtttgtgtatttgatgagaacttaagagagattagtgtaggttttaaaa 7857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 95
Target Start/End: Complemental strand, 21516262 - 21516209
Alignment:
Q  42 atttgatgagaactaaagggaggttagtgtaagttttaaaattagaggaggtgt 95  Q
    ||||||| |||||| ||||||| ||||||||  |||||||| ||||||||||||    
T  21516262 atttgataagaacttaagggagattagtgtatattttaaaactagaggaggtgt 21516209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 95
Target Start/End: Complemental strand, 21516485 - 21516432
Alignment:
Q  42 atttgatgagaactaaagggaggttagtgtaagttttaaaattagaggaggtgt 95  Q
    ||||||| |||||| ||||||| ||||||||  |||||||| ||||||||||||    
T  21516485 atttgataagaacttaagggagattagtgtatattttaaaactagaggaggtgt 21516432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 95
Target Start/End: Complemental strand, 21516708 - 21516655
Alignment:
Q  42 atttgatgagaactaaagggaggttagtgtaagttttaaaattagaggaggtgt 95  Q
    ||||||| |||||| ||||||| ||||||||  |||||||| ||||||||||||    
T  21516708 atttgataagaacttaagggagattagtgtatattttaaaactagaggaggtgt 21516655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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