View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3376-Insertion-2 (Length: 943)
Name: NF3376-Insertion-2
Description: NF3376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3376-Insertion-2 |
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Alignment Details
Target: chr7 (Bit Score: 827; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 827; E-Value: 0
Query Start/End: Original strand, 7 - 911
Target Start/End: Original strand, 42341857 - 42342760
Alignment:
| Q |
7 |
agagaaggcagaggaggatgatcaagaatagagagtcagcagcaagatctagagccagaaaacaggttcctgaaattttaaccaatcatattatacttaa |
106 |
Q |
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| T |
42341857 |
agagaaggcagaggaggatgatcaagaatagagagtcagcagcaagatctagagccagaaaacaggttcctgaaattttaaccaatcatattatacttaa |
42341956 |
T |
|
| Q |
107 |
atctaaaattatgtatccacaaatgtatgaattatttgaaattcttatgtatatatgatcaagataatacaacattatatttatatgctattgaaggtaa |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
42341957 |
-tctaaaattatgtatccacaaatgtatgaattatttgaaattcttatgtatatatgatcaagataatacagcattatatttatatgctattgaaggtaa |
42342055 |
T |
|
| Q |
207 |
cattagtttaagaagaattggtaatatgtcaattttttatcaactctttacatccaaattagaaatagtatgtttaatctagtttaatatttgccattat |
306 |
Q |
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| T |
42342056 |
cattagtttaagaagaattggtaatatgtcaattttttatcaactctttacatccaaattagaaatagtatgtttaatctagtttaatatttgccattat |
42342155 |
T |
|
| Q |
307 |
attgttaatgtgactcctttgtgacacannnnnnnnnnnnnnnnnngcaggcctatacagttgaattagaagcagaactgaatcaattaagagaagagaa |
406 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42342156 |
attgttaatgtgactcctttgtgacacatttttctttgttgcttttgcaggcctatacagttgaattagaagcagaactgaatcaattaagagaagagaa |
42342255 |
T |
|
| Q |
407 |
ttctcaactgaaacaggcactggtactgccaaacaacatgaactattataagaatatttgatagtttttctttagtgattcaattatactgacaaggatc |
506 |
Q |
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| T |
42342256 |
ttctcaactgaaacaggcactggtactgccaaacaacatgaactattataagaatatttgatagtttttctttagtgattcaattatactgacaaggatc |
42342355 |
T |
|
| Q |
507 |
atgcttcttttattcttcaggctgaactcgagaggagaagaagacaacaggtaaccaatgatggtctaaactataattagccatagaaaatttagagaca |
606 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42342356 |
atgcttcttttattcttcaggctgaactcgagaggagaagaagacaacaggtaaccaatgatggtctaaactataattagccatagaaaatttagagaca |
42342455 |
T |
|
| Q |
607 |
ttaaaactccttttattttgaatcaaatggattgaaatcaaatctaaattactgtcttatgattatctcatgcagtgtttagaggaaacaaacgtgagag |
706 |
Q |
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| T |
42342456 |
ttaaaactccttttattttgaatcaaatggattgaaatcaaatctaaattactgtcttatgattatctcatgcagtgttcagaggaaacaaacgtgagag |
42342555 |
T |
|
| Q |
707 |
ttcaaacgaaagctcagaaagcaaaagagaaactgagaggcttaagaaggaatacaagttgtcatctgtgaagaaaacatcacatggtaaagagtgaaat |
806 |
Q |
| |
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| T |
42342556 |
ttcaaacgaaagctcagaaagcaaaagagaaactgagaggcttaagaaggaatacaagttgtcatctgtgaagaaaacatcacatggtagagagtgaaat |
42342655 |
T |
|
| Q |
807 |
ccttgatgcataagtgcatcttcttgtgtagttaaaactgagaaaagtgcacatgatgcagatcaagaaccaagaagaatatactaaagtcgaaaccagt |
906 |
Q |
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| T |
42342656 |
ccttgatgcataagtgcatcttcttgtgtagttaaaactgagaaaagtgcacatgatgcagatcaagaaccaagaagaatatactaaagtcaaaaccagt |
42342755 |
T |
|
| Q |
907 |
caaaa |
911 |
Q |
| |
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||||| |
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| T |
42342756 |
caaaa |
42342760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 367 - 422
Target Start/End: Complemental strand, 9522550 - 9522495
Alignment:
| Q |
367 |
ttgaattagaagcagaactgaatcaattaagagaagagaattctcaactgaaacag |
422 |
Q |
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||||||||||||||||| ||||||| |||||| |||| |||||| |||||||||| |
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| T |
9522550 |
ttgaattagaagcagaattgaatcagttaagataagataattcttgactgaaacag |
9522495 |
T |
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