View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3376-Insertion-21 (Length: 72)

Name: NF3376-Insertion-21
Description: NF3376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3376-Insertion-21
NF3376-Insertion-21
[»] chr1 (5 HSPs)
chr1 (7-72)||(2926626-2926691)
chr1 (31-72)||(25652225-25652266)
chr1 (7-49)||(28242421-28242463)
chr1 (7-49)||(47255349-47255391)
chr1 (7-56)||(6808570-6808619)
[»] chr5 (3 HSPs)
chr5 (8-66)||(316881-316939)
chr5 (7-49)||(27637622-27637664)
chr5 (7-71)||(33906017-33906081)
[»] chr4 (8 HSPs)
chr4 (7-72)||(12119657-12119721)
chr4 (7-66)||(33089996-33090055)
chr4 (14-72)||(38811177-38811235)
chr4 (7-64)||(379497-379554)
chr4 (7-64)||(12073509-12073566)
chr4 (16-64)||(22882746-22882794)
chr4 (16-64)||(22934410-22934458)
chr4 (7-47)||(46703618-46703658)
[»] chr8 (3 HSPs)
chr8 (14-72)||(9633594-9633652)
chr8 (7-56)||(7597732-7597781)
chr8 (7-58)||(29796320-29796371)
[»] chr7 (5 HSPs)
chr7 (7-49)||(3904626-3904668)
chr7 (7-64)||(4253523-4253579)
chr7 (7-49)||(8359325-8359367)
chr7 (7-49)||(22328399-22328441)
chr7 (7-64)||(26639442-26639499)
[»] chr6 (1 HSPs)
chr6 (7-64)||(26800704-26800761)
[»] chr2 (3 HSPs)
chr2 (7-72)||(24398175-24398240)
chr2 (7-58)||(33648289-33648340)
chr2 (7-56)||(28672048-28672097)
[»] scaffold0219 (1 HSPs)
scaffold0219 (7-58)||(27442-27493)
[»] chr3 (2 HSPs)
chr3 (24-71)||(26323058-26323105)
chr3 (7-72)||(46173474-46173538)


Alignment Details
Target: chr1 (Bit Score: 46; Significance: 6e-18; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 6e-18
Query Start/End: Original strand, 7 - 72
Target Start/End: Original strand, 2926626 - 2926691
Alignment:
Q  7 agatcaatctctcccacagagtaggtcattgttgtaccgaactagataaacaattctttggtgttg 72  Q
    |||||||||||| |  |||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  2926626 agatcaatctcttctgcagagtaggtcattgttgcaccgaactaggtaaacaattctttggtgttg 2926691  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.00000000008
Query Start/End: Original strand, 31 - 72
Target Start/End: Original strand, 25652225 - 25652266
Alignment:
Q  31 gtcattgttgtaccgaactagataaacaattctttggtgttg 72  Q
    |||||||||| |||||||| ||||||||||||||||||||||    
T  25652225 gtcattgttgaaccgaactggataaacaattctttggtgttg 25652266  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 28242421 - 28242463
Alignment:
Q  7 agatcaatctctcccacagagtaggtcattgttgtaccgaact 49  Q
    ||||||||||||||  |||||||||||||||||| ||||||||    
T  28242421 agatcaatctctcctccagagtaggtcattgttggaccgaact 28242463  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 49
Target Start/End: Complemental strand, 47255391 - 47255349
Alignment:
Q  7 agatcaatctctcccacagagtaggtcattgttgtaccgaact 49  Q
    ||||||||||||||  |||||||||||||||||| ||||||||    
T  47255391 agatcaatctctcctccagagtaggtcattgttggaccgaact 47255349  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 6808570 - 6808619
Alignment:
Q  7 agatcaatctctcccacagagtaggtcattgttgtaccgaactagataaa 56  Q
    |||||||||||| || |||||||||| |||||||  ||||||||||||||    
T  6808570 agatcaatctcttcctcagagtaggttattgttggtccgaactagataaa 6808619  T

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Target: chr5 (Bit Score: 39; Significance: 0.00000000000009; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.00000000000009
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 316881 - 316939
Alignment:
Q  8 gatcaatctctcccacagagtaggtcattgttgtaccgaactagataaacaattctttg 66  Q
    ||||||||||||||  ||||||||||||||||| |||||||| | ||||||||||||||    
T  316881 gatcaatctctcccctagagtaggtcattgttggaccgaacttggtaaacaattctttg 316939  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 49
Target Start/End: Complemental strand, 27637664 - 27637622
Alignment:
Q  7 agatcaatctctcccacagagtaggtcattgttgtaccgaact 49  Q
    ||||||||||||||  |||||||||||||||||| ||||||||    
T  27637664 agatcaatctctcctgcagagtaggtcattgttggaccgaact 27637622  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 33906081 - 33906017
Alignment:
Q  7 agatcaatctctcccacagagtaggtcattgttgtaccgaactagataaacaattctttggtgtt 71  Q
    |||||||||||| ||  ||||||||||| ||||| ||||| || | ||||||||||||| |||||    
T  33906081 agatcaatctcttccctagagtaggtcaatgttggaccgagctgggtaaacaattcttttgtgtt 33906017  T

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Target: chr4 (Bit Score: 38; Significance: 0.0000000000003; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 72
Target Start/End: Original strand, 12119657 - 12119721
Alignment:
Q  7 agatcaatctctcccacagagtaggtcattgttgtaccgaactagataaacaattctttggtgttg 72  Q
    |||||||||||||||| ||||||||||||||||| |||||||||| | |||||||  |||||||||    
T  12119657 agatcaatctctccca-agagtaggtcattgttggaccgaactaggtgaacaatttcttggtgttg 12119721  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 66
Target Start/End: Original strand, 33089996 - 33090055
Alignment:
Q  7 agatcaatctctcccacagagtaggtcattgttgtaccgaactagataaacaattctttg 66  Q
    ||||||||||||||   ||||||||| ||||||| |||| ||||||||||||||||||||    
T  33089996 agatcaatctctcctctagagtaggttattgttggaccggactagataaacaattctttg 33090055  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 72
Target Start/End: Complemental strand, 38811235 - 38811177
Alignment:
Q  14 tctctcccacagagtaggtcattgttgtaccgaactagataaacaattctttggtgttg 72  Q
    ||||||||  ||||||||||||||||| |||||||| | |||||||||||| |||||||    
T  38811235 tctctccccaagagtaggtcattgttggaccgaactgggtaaacaattcttcggtgttg 38811177  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 379497 - 379554
Alignment:
Q  7 agatcaatctctcccacagagtaggtcattgttgtaccgaactagataaacaattctt 64  Q
    ||||||||||||||  |||||||||||||||||| |||||||| ||| |||| |||||    
T  379497 agatcaatctctcctccagagtaggtcattgttggaccgaactggatgaacatttctt 379554  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 12073509 - 12073566
Alignment:
Q  7 agatcaatctctcccacagagtaggtcattgttgtaccgaactagataaacaattctt 64  Q
    |||||||||||||   |||||||||||||||||| |||||||||| | |||| |||||    
T  12073509 agatcaatctctcttccagagtaggtcattgttggaccgaactaggtgaacatttctt 12073566  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 22882794 - 22882746
Alignment:
Q  16 tctcccacagagtaggtcattgttgtaccgaactagataaacaattctt 64  Q
    |||||| | |||||||||||||||| |||||||| |||||||| |||||    
T  22882794 tctcccccggagtaggtcattgttggaccgaactggataaacatttctt 22882746  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 22934458 - 22934410
Alignment:
Q  16 tctcccacagagtaggtcattgttgtaccgaactagataaacaattctt 64  Q
    |||||| | |||||||||||||||| |||||||| |||||||| |||||    
T  22934458 tctcccccggagtaggtcattgttggaccgaactggataaacatttctt 22934410  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 46703618 - 46703658
Alignment:
Q  7 agatcaatctctcccacagagtaggtcattgttgtaccgaa 47  Q
    ||||||||||||||  |||||||||||||||||| ||||||    
T  46703618 agatcaatctctcctccagagtaggtcattgttggaccgaa 46703658  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 72
Target Start/End: Complemental strand, 9633652 - 9633594
Alignment:
Q  14 tctctcccacagagtaggtcattgttgtaccgaactagataaacaattctttggtgttg 72  Q
    ||||| ||||| ||||||||||||||| ||||||||   ||||||||||||||||||||    
T  9633652 tctcttccacatagtaggtcattgttggaccgaactgtgtaaacaattctttggtgttg 9633594  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 7597732 - 7597781
Alignment:
Q  7 agatcaatctctcccacagagtaggtcattgttgtaccgaactagataaa 56  Q
    ||||||||||||||| || ||||||||||||||  |||||||| ||||||    
T  7597732 agatcaatctctcccccatagtaggtcattgttagaccgaactggataaa 7597781  T

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Target: chr8; HSP #3
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 58
Target Start/End: Complemental strand, 29796371 - 29796320
Alignment:
Q  7 agatcaatctctcccacagagtaggtcattgttgtaccgaactagataaaca 58  Q
    ||||||||||||||| ||  |||||||||||||| |||||||| | ||||||    
T  29796371 agatcaatctctcccccaatgtaggtcattgttggaccgaacttggtaaaca 29796320  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 49
Target Start/End: Complemental strand, 3904668 - 3904626
Alignment:
Q  7 agatcaatctctcccacagagtaggtcattgttgtaccgaact 49  Q
    ||||||||||||||| |||||||||||||||||| ||||||||    
T  3904668 agatcaatctctccctcagagtaggtcattgttggaccgaact 3904626  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 4253579 - 4253523
Alignment:
Q  7 agatcaatctctcccacagagtaggtcattgttgtaccgaactagataaacaattctt 64  Q
    |||||||||||||||||||||||||||| | ||| |||||||||| |||||| |||||    
T  4253579 agatcaatctctcccacagagtaggtcaat-ttggaccgaactaggtaaacatttctt 4253523  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 49
Target Start/End: Complemental strand, 8359367 - 8359325
Alignment:
Q  7 agatcaatctctcccacagagtaggtcattgttgtaccgaact 49  Q
    ||||||||||||||  |||||||||||||||||| ||||||||    
T  8359367 agatcaatctctcctccagagtaggtcattgttggaccgaact 8359325  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 49
Target Start/End: Complemental strand, 22328441 - 22328399
Alignment:
Q  7 agatcaatctctcccacagagtaggtcattgttgtaccgaact 49  Q
    |||||||||||||||  ||||||||||||||||| ||||||||    
T  22328441 agatcaatctctcccctagagtaggtcattgttggaccgaact 22328399  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 26639442 - 26639499
Alignment:
Q  7 agatcaatctctcccacagagtaggtcattgttgtaccgaactagataaacaattctt 64  Q
    ||||||||||||||  || |||| ||||||||||||||||||| | |||| |||||||    
T  26639442 agatcaatctctcctccatagtatgtcattgttgtaccgaactggctaaaaaattctt 26639499  T

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Target: chr6 (Bit Score: 34; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 26800704 - 26800761
Alignment:
Q  7 agatcaatctctcccacagagtaggtcattgttgtaccgaactagataaacaattctt 64  Q
    ||||||||||||||  |||||||||||||||||| |||||||| ||| |||| |||||    
T  26800704 agatcaatctctcctccagagtaggtcattgttggaccgaactggatgaacatttctt 26800761  T

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Target: chr2 (Bit Score: 34; Significance: 0.00000000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 72
Target Start/End: Original strand, 24398175 - 24398240
Alignment:
Q  7 agatcaatctctcccacagagtaggtcattgttgtaccgaactagataaacaattctttggtgttg 72  Q
    ||||||||||||||| || ||||||||||||||| |||||||| | | |||||||  |||||||||    
T  24398175 agatcaatctctcccccatagtaggtcattgttggaccgaactggctgaacaattacttggtgttg 24398240  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 58
Target Start/End: Original strand, 33648289 - 33648340
Alignment:
Q  7 agatcaatctctcccacagagtaggtcattgttgtaccgaactagataaaca 58  Q
    ||||||||||||||  |||||||||||||||||| |||||||| | ||||||    
T  33648289 agatcaatctctcctccagagtaggtcattgttggaccgaactgggtaaaca 33648340  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 28672048 - 28672097
Alignment:
Q  7 agatcaatctctcccacagagtaggtcattgttgtaccgaactagataaa 56  Q
    ||||||||||||||  |||||||||||||||||| |||||| ||| ||||    
T  28672048 agatcaatctctcctccagagtaggtcattgttggaccgaattaggtaaa 28672097  T

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Target: scaffold0219 (Bit Score: 32; Significance: 0.000000001; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 32; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 58
Target Start/End: Complemental strand, 27493 - 27442
Alignment:
Q  7 agatcaatctctcccacagagtaggtcattgttgtaccgaactagataaaca 58  Q
    ||||||||||||||| || ||||||||||||||| |||||| ||| ||||||    
T  27493 agatcaatctctcccccatagtaggtcattgttggaccgaattaggtaaaca 27442  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 71
Target Start/End: Complemental strand, 26323105 - 26323058
Alignment:
Q  24 agagtaggtcattgttgtaccgaactagataaacaattctttggtgtt 71  Q
    ||||||||||||||||| |||||| | | |||||||||||||||||||    
T  26323105 agagtaggtcattgttggaccgaagtgggtaaacaattctttggtgtt 26323058  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 72
Target Start/End: Original strand, 46173474 - 46173538
Alignment:
Q  7 agatcaatctctcccacagagtaggtcattgttgtaccgaactagataaacaattctttggtgttg 72  Q
    ||||||||||||||| |||| |||||||  |||| |||||||||||| |||||||  |||||||||    
T  46173474 agatcaatctctcccccagattaggtca-agttggaccgaactagatcaacaatttcttggtgttg 46173538  T

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