View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3376-Insertion-3 (Length: 918)

Name: NF3376-Insertion-3
Description: NF3376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3376-Insertion-3
NF3376-Insertion-3
[»] chr4 (3 HSPs)
chr4 (8-918)||(52247836-52248724)
chr4 (789-893)||(322802-322905)
chr4 (575-640)||(324398-324463)
[»] chr2 (4 HSPs)
chr2 (25-308)||(32998787-32999070)
chr2 (610-904)||(556003-556303)
chr2 (515-767)||(3013313-3013570)
chr2 (426-658)||(23984797-23985030)
[»] chr1 (4 HSPs)
chr1 (426-743)||(47789644-47789967)
chr1 (777-893)||(6236045-6236161)
chr1 (529-833)||(47783994-47784300)
chr1 (522-675)||(6236236-6236389)
[»] chr3 (5 HSPs)
chr3 (591-744)||(39021357-39021513)
chr3 (575-675)||(37043744-37043844)
chr3 (426-473)||(37043639-37043686)
chr3 (426-476)||(34456374-34456424)
chr3 (788-890)||(39020843-39020944)
[»] chr6 (1 HSPs)
chr6 (426-675)||(29412764-29413012)
[»] chr5 (3 HSPs)
chr5 (426-597)||(39006468-39006640)
chr5 (636-893)||(8586911-8587174)
chr5 (426-465)||(18959656-18959695)
[»] chr8 (2 HSPs)
chr8 (804-893)||(29908310-29908399)
chr8 (674-767)||(31942750-31942843)


Alignment Details
Target: chr4 (Bit Score: 720; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 720; E-Value: 0
Query Start/End: Original strand, 8 - 918
Target Start/End: Complemental strand, 52248724 - 52247836
Alignment:
Q  8 gccttgaattatgttccaagttgaagatgttgaaattccttgatttgagctataacatgttgtcaggacctgtttctgagacactttttggtttgaaact 107  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52248724 gccttgaattacgttccaagttgaagatgttgaaattccttgatttgagctataacatgttgtcaggacctgtttctgagacactttttggtttgaaact 52248625  T
Q  108 cattgaagtgttgaatatttaaaagtaactcgtttcctggtgagtttttccaccttggtgaatttccacgtctacttgctctcagtgtgagtaacaattc 207  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52248624 cattgaagtgttgaatatttaaa-gtaactcgtttcctggtgagtttttccaccttggtgaatttccacgtctacttgctctcagtgtgagtaacaattc 52248526  T
Q  208 attcactggtggattcagttctcaaatttgcaattcttccaaggttcttcacacacttgatttattttaaatcattttagtggtgaccttgaaggtttga 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52248525 attcactggtggattcagttctcaaatttgcaattcttccaaggttcttcacacacttgatttattttaaatcattttagtggtgaccttgaaggtttga 52248426  T
Q  308 atttgaacaactgcactaaatctctccgaagtttgcatttggtgttaatcatatttaccttaaactcgtataaagaacgggtaaatagtannnnnnnnnn 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              
T  52248425 atttgaacaactgcactaaatctctccgaagtttgcatttggtgttaatcatatttaccttaaactcgtataaagaacgggtaaatagta--tttttttt 52248328  T
Q  408 nnnnnnnnnnaagaatccaaatgcaaaatataataaaaaccaaaccagttaagcacaaaatgtgcctaatgggatattgtacaaaaaatcatagtaacaa 507  Q
              |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  52248327 ttttttttttaagaatccaaatgcaaaatataataacaaccaaaccagttaagcacaaaatgtgcctaatgggaaattgtacaaaaaatcatagtaacaa 52248228  T
Q  508 acatggcaatacagaaactacaattacaaactagtgtaacctatacaaagacacgacgcagaccattaataatgaaaatcaatagagaaatccggtttat 607  Q
    |||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||    
T  52248227 acatggcaatacagaaactacaattacaaactggtgtaacctatataaagagacgacgtagaccattaataatgaaaatcaatagagaaatccggtttat 52248128  T
Q  608 ccgtctttagccaccatcaagaatgaaacttaaaactatggagaagttgatcctgagaagacacgttgaaaattctcgaattccgctccttccatttgac 707  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||     
T  52248127 gcgtctttagccaccatcaagaatgaaacttaaaactatggagaagttgatcctgagaagatacgttgaaaattctcgaattccgctccttccatttgat 52248028  T
Q  708 ccgaagacacgtctgccacatcacgtgaaaacaagaacaaatgtccttcttgaaaacatgtgttccagcaagttgttgcgcgtgacatctaatgtatgat 807  Q
    | |||||||||||||||                   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52248027 ctgaagacacgtctgcc-------------------acaaatgtccttcttgaaaacatgtgttccagcaagttgttgcgcgtgacatctaatgtatgat 52247947  T
Q  808 ggaacaatggtagttatacccaaccaacaatgaagaagatgttaaatgctatcaaagaagttgcattccaaaaatagatgattgatggcttcctcttctc 907  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  52247946 ggaacaatggtagttatacccaaccaacaatgaagaagatgtcaaatgctatcaaagaagtcacattccaaaaatagatgattgatggcttcctcttctc 52247847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 789 - 893
Target Start/End: Complemental strand, 322905 - 322802
Alignment:
Q  789 gtgacatctaatgtatgatggaacaatggtagttatacccaaccaacaatgaagaagatgttaaatgctatcaaagaagttgcattccaaaaatagatga 888  Q
    |||||||||||| | ||||||||||| | ||| |||||||||||| | | |||  |||||| |||||||| ||||||||| | | |||||||||||| ||    
T  322905 gtgacatctaatatttgatggaacaacgatagctatacccaaccagcga-gaatgagatgtcaaatgctaccaaagaagtcgtaatccaaaaatagaaga 322807  T
Q  889 ttgat 893  Q
    |||||    
T  322806 ttgat 322802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 575 - 640
Target Start/End: Complemental strand, 324463 - 324398
Alignment:
Q  575 aataatgaaaatcaatagagaaatccggtttatccgtctttagccaccatcaagaatgaaacttaa 640  Q
    |||||| |||||||||||||||||  ||||||| | ||||||||| |||  ||||||||| |||||    
T  324463 aataataaaaatcaatagagaaatttggtttatgcatctttagccgccactaagaatgaagcttaa 324398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 133; Significance: 1e-68; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 25 - 308
Target Start/End: Complemental strand, 32999070 - 32998787
Alignment:
Q  25 aagttgaagatgttgaaattccttgatttgagctataacatgttgtcaggacctgtttctgagacactttttggtttgaaactcattgaagtgttgaata 124  Q
    ||||||||||||||||| || ||||||||||||||||||||||||| ||||  |||   |||  |||||| |||||||||   |||||||||||||||||    
T  32999070 aagttgaagatgttgaagtttcttgatttgagctataacatgttgttaggaggtgtgaatgaatcactttctggtttgaagtccattgaagtgttgaata 32998971  T
Q  125 tttaaaagtaactcgtttcctggtgagtttttccaccttggtgaatttccacgtctacttgctctcagtgtgagtaacaattcattcactggtggattca 224  Q
    ||| || | || || ||| ||| | |  |||||||||||||||||||||| | ||||||||| |||| ||||||||||||||||||| ||||||||||||    
T  32998970 tttcaa-gcaattcattttctgataaagttttccaccttggtgaatttcctcatctacttgcactcaatgtgagtaacaattcattctctggtggattca 32998872  T
Q  225 gttctcaaatttgcaattcttccaaggttcttcacacacttgatttat-tttaaatcattttagtggtgaccttgaaggtttgaa 308  Q
    |||||||||||||||||||||| |  | |||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||    
T  32998871 gttctcaaatttgcaattcttcaagagatcttcacacacttgatttatctttaaatcagtttagtggtgatcttgaaggtttgaa 32998787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 610 - 904
Target Start/End: Original strand, 556003 - 556303
Alignment:
Q  610 gtctttagccaccatcaagaatgaaacttaaaactatggagaagttgatcctgagaagacacgtt------gaaaattctcgaattccgctccttccatt 703  Q
    ||||||| ||||||||| ||||||||||||| ||||| |||||| ||||||  | || ||| |||      |||| ||||||| ||||| ||||||||      
T  556003 gtctttacccaccatcaggaatgaaacttaatactattgagaagatgatccataaaaaacatgttattgctgaaagttctcgagttccgatccttccaaa 556102  T
Q  704 tgacccgaagacacgtctgccacatcacgtgaaaacaagaacaaatgtccttcttgaaaacatgtgttccagcaagttgttgcgcgtgacatctaatgta 803  Q
    ||||   |||||| | | |||||| ||| ||||||||||||| |||||||||| |||||||||| || |||  ||||||||| |||||||||| ||| |     
T  556103 tgacttaaagacaagccagccacaccacctgaaaacaagaacgaatgtccttcctgaaaacatgcgtgccaaaaagttgttgtgcgtgacatccaatatc 556202  T
Q  804 tgatggaacaatggtagttatacccaaccaacaatgaagaagatgttaaatgctatcaaagaagttgcattccaaaaatagatgattgatggcttcctct 903  Q
    |||||||||||||||||||||||||||||| | |||||  | |||  |||||||| ||||||||| | | ||| |||||||||||||||| | |||||||    
T  556203 tgatggaacaatggtagttatacccaaccagcgatgaacgaaatgccaaatgctaccaaagaagtcgaactcctaaaatagatgattgatcgtttcctct 556302  T
Q  904 t 904  Q
    |    
T  556303 t 556303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 515 - 767
Target Start/End: Complemental strand, 3013570 - 3013313
Alignment:
Q  515 aatacagaaactacaattacaaactagtgtaacctatacaaagacacgacgcagaccattaataatgaaaatcaatagagaaatccggtttatccgtctt 614  Q
    |||||| |||| ||||||||||||| ||||||||||||| |||| |||||  | ||||  |||||| |||||||| ||||||| | | | ||| ||||||    
T  3013570 aatacataaaccacaattacaaactggtgtaacctataccaagagacgacataaaccaccaataat-aaaatcaaaagagaaacctgatatatgcgtctt 3013472  T
Q  615 tagccaccatcaagaatgaaacttaaaactatggagaagttgatcctgagaagacacgt------tgaaaattctcgaattccgctccttccatttgacc 708  Q
    ||||||||| |||||||||| ||||| ||||| |||||||||||||| |||||||||||      |||||||| |||| ||||||||||||||| || ||    
T  3013471 tagccaccaccaagaatgaagcttaatactatcgagaagttgatccttagaagacacgttgtcgctgaaaattttcgagttccgctccttccatatggcc 3013372  T
Q  709 cgaagacacgtctgccacatcacgtgaaaacaagaacaaatgtccttcttgaaaacatg 767  Q
    | |||| | | || ||||| ||| ||||||||| ||  |||||||||| | ||||||||    
T  3013371 caaagaaaggcctaccacaccacctgaaaacaaaaatgaatgtccttcctaaaaacatg 3013313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 426 - 658
Target Start/End: Original strand, 23984797 - 23985030
Alignment:
Q  426 aaatgcaaaatataataaaaaccaaaccagttaagcacaaaatgtgcctaatgggatattgtacaaaaaatcatagtaacaaacatggcaat-acagaaa 524  Q
    |||||||||||||| |||||| |||||||||||||||||| ||||||||||||| | | |||  | ||  ||| ||||||||||| || ||  |||||||    
T  23984797 aaatgcaaaatatattaaaaatcaaaccagttaagcacaagatgtgcctaatggaaaactgtgtacaacgtcaaagtaacaaacacgggaaagacagaaa 23984896  T
Q  525 ctacaattacaaactagtgtaacctatacaaagacacgacgcagaccattaataatgaaaatcaatagagaaatccggtttatccgtctttagccaccat 624  Q
    | ||||||||||| | ||||||| |||||||||| ||| |  ||||||| ||||||||||||||| ||  ||| ||| |||||  ||||||||||||||     
T  23984897 ccacaattacaaaatggtgtaacttatacaaagagacggcatagaccatcaataatgaaaatcaaaagcaaaacccgatttatttgtctttagccaccac 23984996  T
Q  625 caagaatgaaacttaaaactatggagaagttgat 658  Q
    ||| ||||||  |||| ||||| |||||||||||    
T  23984997 caaaaatgaagtttaatactatcgagaagttgat 23985030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 2e-33; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 426 - 743
Target Start/End: Complemental strand, 47789967 - 47789644
Alignment:
Q  426 aaatgcaaaatataataaaaaccaaaccagttaagcacaaaatgtgcctaatgggatattgtacaaaaaatcatagtaacaaacatggcaat-acagaaa 524  Q
    |||||||||||||| |||||||||||| |||||||||||| ||| |||||| ||   | |||  | ||  ||| || |||||||| |  ||  |||||||    
T  47789967 aaatgcaaaatatattaaaaaccaaacgagttaagcacaagatgcgcctaacggataactgtgtacaacgtcaaagcaacaaacacgctaaagacagaaa 47789868  T
Q  525 ctacaattacaaactagtgtaacctatacaaagacacgacgcagaccattaataatgaaaatcaatagagaaatccggtttatccgtctttagccaccat 624  Q
    | ||||||||||| |  ||||| || |||||||| ||| |  ||||||  |||||| | |||||| || |||| || |||||| | ||||||||||||||    
T  47789867 ccacaattacaaaatgatgtaatctttacaaagagacgccatagaccaccaataataataatcaaaagcgaaacccagtttatgcatctttagccaccat 47789768  T
Q  625 caagaatgaaacttaaaactatggagaagttgatcctgagaagaca------cgttgaaaattctcgaattccgctccttccatttgacccgaagacacg 718  Q
    |||||||||||||||| ||||  |||||||||||||| ||||||||      |||||||||||||||| |||| |||||||||  |||||  |||||| |    
T  47789767 caagaatgaaacttaatactagcgagaagttgatccttagaagacatgttgtcgttgaaaattctcgagttcctctccttcca-atgacctaaagacatg 47789669  T
Q  719 tctgccacatcacgtgaaaacaaga 743  Q
    || |||||| ||| |||||||||||    
T  47789668 tcagccacaccacctgaaaacaaga 47789644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 777 - 893
Target Start/End: Complemental strand, 6236161 - 6236045
Alignment:
Q  777 aagttgttgcgcgtgacatctaatgtatgatggaacaatggtagttatacccaaccaacaatgaagaagatgttaaatgctatcaaagaagttgcattcc 876  Q
    |||||||||| || |||||| |||||||||| |||||| | |||||||||||||||| |||||||   ||||| ||| |||| ||||||||||||||| |    
T  6236161 aagttgttgcacgagacatccaatgtatgattgaacaacgttagttatacccaaccagcaatgaacgtgatgtcaaacgctaacaaagaagttgcatttc 6236062  T
Q  877 aaaaatagatgattgat 893  Q
    |||||||||||||||||    
T  6236061 aaaaatagatgattgat 6236045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 529 - 833
Target Start/End: Complemental strand, 47784300 - 47783994
Alignment:
Q  529 aattacaaactagtgtaacctatacaaagacacgacgcagaccattaataatgaaaatcaatagagaaatccggtttatccgtctttagccaccatcaag 628  Q
    ||||||||| | || |||| |||||||||| ||| |  | ||| | |||||||||||| || |   |||||| ||||||  |||||||||||||| ||||    
T  47784300 aattacaaaatggtttaacatatacaaagagacggcatataccgtcaataatgaaaataaaaaacaaaatccagtttatgtgtctttagccaccaccaag 47784201  T
Q  629 aatgaaacttaaaactatggagaagttgatcctgagaagacacgttg---aaaattctcgaattccgctccttccatttgacccgaagacacgtctgcca 725  Q
    |||||| ||||| ||||| || ||||||||| | |||||| | ||||   |||||||| || ||   ||| ||| | | ||||| |||||| ||| | ||    
T  47784200 aatgaagcttaatactatcgacaagttgatctttagaagagatgttgttgaaaattctagagtttatctcattcaaat-gacccaaagacatgtcagtca 47784102  T
Q  726 catcacgtgaaaacaagaacaaatgtccttcttgaaaacatgtgttccagcaagttgttgcgcgtgacatctaatgtatgatggaacaatggtagttata 825  Q
    || ||| ||||||||||| | |||| ||||| ||||| |||| |  |||  ||||||||| |||||||| | ||| | ||||||||||||| ||||||||    
T  47784101 caccacctgaaaacaagagcgaatgcccttcctgaaagcatgcgcgccaaaaagttgttgtgcgtgacaaccaatatctgatggaacaatgatagttata 47784002  T
Q  826 cccaacca 833  Q
    ||||||||    
T  47784001 cccaacca 47783994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 522 - 675
Target Start/End: Complemental strand, 6236389 - 6236236
Alignment:
Q  522 aaactacaattacaaactagtgtaacctatacaaagacacgacgcagaccattaataatgaaaatcaatagagaaatccggtttatccgtctttagccac 621  Q
    |||| ||||||||||| | ||||| | |||| ||||| | |||   |||||  |||||| |||||||| ||||||||| | ||||| |||||||||||||    
T  6236389 aaaccacaattacaaattggtgtagcatatagaaagagatgacattgaccaccaataataaaaatcaaaagagaaatctgatttatgcgtctttagccac 6236290  T
Q  622 catcaagaatgaaacttaaaactatggagaagttgatcctgagaagacacgttg 675  Q
     | |||||||||| ||||| |||||  ||||||||| | |||| ||||| ||||    
T  6236289 aaccaagaatgaagcttaagactatcaagaagttgaccatgaggagacaagttg 6236236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 2e-24; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 591 - 744
Target Start/End: Complemental strand, 39021513 - 39021357
Alignment:
Q  591 agagaaatccggtttatccgtctttagccaccatcaagaatgaaacttaaaactatggagaagttgatcctgagaagacacgttg---aaaattctcgaa 687  Q
    ||||||||  |||||||  ||||||||||||||||| |||| ||||| || ||||| ||||||||| |||| | |||||| ||||   |||||||||||     
T  39021513 agagaaatttggtttatgtgtctttagccaccatcaggaataaaactcaatactatcgagaagttggtccttaaaagacatgttgctgaaaattctcgag 39021414  T
Q  688 ttccgctccttccatttgacccgaagacacgtctgccacatcacgtgaaaacaagaa 744  Q
    ||||||||||||||| |||||| |||||| ||| |||||| ||| | ||||||||||    
T  39021413 ttccgctccttccatatgacccaaagacaggtcagccacaccacctaaaaacaagaa 39021357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 575 - 675
Target Start/End: Original strand, 37043744 - 37043844
Alignment:
Q  575 aataatgaaaatcaatagagaaatccggtttatccgtctttagccaccatcaagaatgaaacttaaaactatggagaagttgatcctgagaagacacgtt 674  Q
    |||||| |||||||| || ||||| | ||||||  ||||||||||||||  || ||||||| |||| | | | |||||||||||||| ||||||||||||    
T  37043744 aataataaaaatcaaaagcgaaattcagtttatgtgtctttagccaccacaaaaaatgaaatttaatattgtcgagaagttgatccttagaagacacgtt 37043843  T
Q  675 g 675  Q
    |    
T  37043844 g 37043844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 426 - 473
Target Start/End: Original strand, 37043639 - 37043686
Alignment:
Q  426 aaatgcaaaatataataaaaaccaaaccagttaagcacaaaatgtgcc 473  Q
    |||||||||||||| |||||||||||  |||||||||||| |||||||    
T  37043639 aaatgcaaaatatattaaaaaccaaattagttaagcacaagatgtgcc 37043686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 426 - 476
Target Start/End: Complemental strand, 34456424 - 34456374
Alignment:
Q  426 aaatgcaaaatataataaaaaccaaaccagttaagcacaaaatgtgcctaa 476  Q
    |||||||||||||| |||||||||||||| ||||||| || | ||||||||    
T  34456424 aaatgcaaaatatattaaaaaccaaaccaattaagcataagaagtgcctaa 34456374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 788 - 890
Target Start/End: Complemental strand, 39020944 - 39020843
Alignment:
Q  788 cgtgacatctaatgtatgatggaacaatggtagttatacccaaccaacaatgaagaagatgttaaatgctatcaaagaagttgcattccaaaaatagatg 887  Q
    ||||||||| ||| | ||||||||||| ||||||||| || || || || ||||  |||||| |||||||| ||||||| | ||| | ||||||||||||    
T  39020944 cgtgacatccaatatttgatggaacaacggtagttattcc-aatcagcactgaacgagatgtcaaatgctaccaaagaaatcgcaattcaaaaatagatg 39020846  T
Q  888 att 890  Q
    |||    
T  39020845 att 39020843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 1e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 426 - 675
Target Start/End: Original strand, 29412764 - 29413012
Alignment:
Q  426 aaatgcaaaatataataaaaaccaaaccagttaagcacaaaatgtgcctaatgggatattgtacaaaaaatcatagtaacaaacatggcaata-cagaaa 524  Q
    |||||||||||||| ||||||| ||| ||||||| |||||||||||  |||||||| | |||  | ||  ||| ||||||||| | || || | || |||    
T  29412764 aaatgcaaaatatattaaaaactaaatcagttaaacacaaaatgtgtgtaatggga-actgtgtacaacgtcaaagtaacaaagacggtaaaaacaaaaa 29412862  T
Q  525 ctacaattacaaactagtgtaacctatacaaagacacgacgcagaccattaataatgaaaatcaatagagaaatccggtttatccgtctttagccaccat 624  Q
    | |||||||  || | ||||||| |||||||||| |||||  ||||||  ||||||||||||||| || |||| |||||| ||  ||| ||||||||||     
T  29412863 ccacaattatcaaatggtgtaacttatacaaagagacgacatagaccaccaataatgaaaatcaaaagcgaaacccggttaatgtgtcattagccaccac 29412962  T
Q  625 caagaatgaaacttaaaactatggagaagttgatcctgagaagacacgttg 675  Q
    ||||||| || | ||| ||||| ||||| || ||||| |||||||||||||    
T  29412963 caagaat-aagcataatactatcgagaaatttatccttagaagacacgttg 29413012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 4e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 426 - 597
Target Start/End: Complemental strand, 39006640 - 39006468
Alignment:
Q  426 aaatgcaaaatataataaaaaccaaaccagttaagcacaaaatgtgcctaatgggatattgtacaaaaaatcatagtaacaaacatggcaat-acagaaa 524  Q
    |||||||||||||| ||||||| |||| |  |||||| || ||||| ||||||| | |||||| | ||  ||| |||| |||| | || ||  |||||||    
T  39006640 aaatgcaaaatatattaaaaacaaaactaactaagcataagatgtgtctaatggaaaattgtatacaacgtcaaagtagcaaatacggtaaggacagaaa 39006541  T
Q  525 ctacaattacaaactagtgtaacctatacaaagacacgacgcagaccattaataatgaaaatcaatagagaaa 597  Q
    ||||||||||||||| |||||||||||||||||| |||||  | ||||  |||||| ||||| || |||||||    
T  39006540 ctacaattacaaactggtgtaacctatacaaagagacgacatataccaccaataataaaaataaaaagagaaa 39006468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 636 - 893
Target Start/End: Original strand, 8586911 - 8587174
Alignment:
Q  636 cttaaaactatggagaagttgatcctgagaagacacgttg------aaaattctcgaattccgctccttccatttgacccgaagacacgtctgccacatc 729  Q
    ||||| ||||| |||||||||||| ||||||||||| |||      |||||||||||| | | |||||| ||| |||||| |||||| | |  ||| | |    
T  8586911 cttaatactatcgagaagttgatcttgagaagacactttgttgctgaaaattctcgaactacactcctttcatatgacccaaagacaggccaaccaaacc 8587010  T
Q  730 acgtgaaaacaagaacaaatgtccttcttgaaaacatgtgttccagcaagttgttgcgcgtgacatctaatgtatgatggaacaatggtagttataccca 829  Q
    || | ||||||||||||||  | |||| ||||| |||     |||  | ||||||| |||||||||| ||| | ||||||||||| | |||  |||||||    
T  8587011 acctaaaaacaagaacaaacattcttcatgaaagcatacacgccaaaaggttgttgggcgtgacatccaatttctgatggaacaacgatagaaataccca 8587110  T
Q  830 accaacaatgaagaagatgttaaatgctatcaaagaagttgcattccaaaaatagatgattgat 893  Q
    |||| | |||||  |||||| |||||||| |||| |||| | | |||||||| ||| |||||||    
T  8587111 accagcgatgaacgagatgtcaaatgctaccaaaaaagtcggactccaaaaaaagacgattgat 8587174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 426 - 465
Target Start/End: Original strand, 18959656 - 18959695
Alignment:
Q  426 aaatgcaaaatataataaaaaccaaaccagttaagcacaa 465  Q
    |||||||||||||| |||||||||||||||||||| ||||    
T  18959656 aaatgcaaaatatattaaaaaccaaaccagttaagtacaa 18959695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 804 - 893
Target Start/End: Original strand, 29908310 - 29908399
Alignment:
Q  804 tgatggaacaatggtagttatacccaaccaacaatgaagaagatgttaaatgctatcaaagaagttgcattccaaaaatagatgattgat 893  Q
    ||||||||||| | |||||||| ||||||| |  ||||  |||||  |||||||| |||||||||  || |||||||||| |||||||||    
T  29908310 tgatggaacaacgatagttataaccaaccagcgttgaacgagatgccaaatgctaccaaagaagtcacactccaaaaatatatgattgat 29908399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 674 - 767
Target Start/End: Complemental strand, 31942843 - 31942750
Alignment:
Q  674 tgaaaattctcgaattccgctccttccatttgacccgaagacacgtctgccacatcacgtgaaaacaagaacaaatgtccttcttgaaaacatg 767  Q
    ||||||||||||| || ||||||||||| ||||||| |||||  | |  ||||| |||  |||||||||||| ||||| |||| ||||| ||||    
T  31942843 tgaaaattctcgagtttcgctccttccaattgacccaaagacgggccaaccacaccacccgaaaacaagaacgaatgttcttcgtgaaagcatg 31942750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University