View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3376-Insertion-4 (Length: 835)
Name: NF3376-Insertion-4
Description: NF3376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3376-Insertion-4 |
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Alignment Details
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 7 - 448
Target Start/End: Complemental strand, 2481152 - 2480735
Alignment:
| Q |
7 |
actatatacatatatataagttgtgaacaaaaacatggaattaattaaattactacttattatgaaatgaaatacgtaatgcttattaaccggcctcata |
106 |
Q |
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| T |
2481152 |
actatatacatatatataagttgtgaacaaaaacatggaatta-----attactacttatt-----atgaaatacgtaatgcttattaaccggcctcata |
2481063 |
T |
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| Q |
107 |
attacaattacattatattatttacatgatgattcacgcaaagactttatacaaatgtttaacctatgattggaccagttcaaacaaatttccaccgaca |
206 |
Q |
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| T |
2481062 |
attacaattacattatattatttacatgatgattcacgcaaagactttatacaaatgtttaacctatgattggaccagttcaaacaaatttccaccgaca |
2480963 |
T |
|
| Q |
207 |
atctatataagtctcgcaaggtgtatataagttccacatttggcattgtactatatatatatttcccctcatacacattcattattcgtaaccactcttt |
306 |
Q |
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| T |
2480962 |
atctatataagtctcgcaaggtgcatataagttccacatttggcattgtactatatatatatttcccctcataca-ataca-cattcat----------- |
2480876 |
T |
|
| Q |
307 |
ctttctgcagatacaaaggcattaggcaccaatcgatcatggtacaacgtaacaagttcagaggagttagacaacgacagtggggctcatgggtctcaga |
406 |
Q |
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| T |
2480875 |
-tatctgcagatacaaaggcattaggcaccaatcgatcatggtacaacgtaacaagttcagaggagttagacaacgacagtggggctcatgggtctcaga |
2480777 |
T |
|
| Q |
407 |
aattcgtcaccctttactgtaatctacttctccaacactata |
448 |
Q |
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| T |
2480776 |
aattcgtcaccctttactgtaatctacttctccaacactata |
2480735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 683 - 835
Target Start/End: Complemental strand, 2480674 - 2480522
Alignment:
| Q |
683 |
tttacacaggaagagaagggtatggctaggtacatttgagacagcagaggctgcagccagagcatatgatcaagcagccatattgatgaatggaaaaaat |
782 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
2480674 |
tttacacaggaagagaagggtatggctaggtacatttgagacagcagaggctgcagccagagcatatgatcaagcggccatattgatgaatggaaaaaat |
2480575 |
T |
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| Q |
783 |
gccaaaaccaatttccctataccaaaggatcaaactgaagatgccaattccct |
835 |
Q |
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| T |
2480574 |
gccaaaaccaatttccctataccaaaggatcaaactgaagatgccaattccct |
2480522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 3e-19; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 690 - 799
Target Start/End: Complemental strand, 47101420 - 47101311
Alignment:
| Q |
690 |
aggaagagaagggtatggctaggtacatttgagacagcagaggctgcagccagagcatatgatcaagcagccatattgatgaatggaaaaaatgccaaaa |
789 |
Q |
| |
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|||||||||||||| |||||||| |||||||| |||||||| | ||||| ||||||||||||||||| || || || |||| ||| | ||||||||||| |
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| T |
47101420 |
aggaagagaagggtgtggctaggaacatttgaaacagcagaagaagcagcaagagcatatgatcaagctgcgattttaatgagtggtagaaatgccaaaa |
47101321 |
T |
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| Q |
790 |
ccaatttccc |
799 |
Q |
| |
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| T |
47101320 |
caaatttccc |
47101311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 690 - 800
Target Start/End: Complemental strand, 2428746 - 2428636
Alignment:
| Q |
690 |
aggaagagaagggtatggctaggtacatttgagacagcagaggctgcagccagagcatatgatcaagcagccatattgatgaatggaaaaaatgccaaaa |
789 |
Q |
| |
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||||| || ||||| ||| |||| |||||||||||||| || | ||||| |||||||||||| |||||||||| | |||| ||||| |||||| |||| |
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| T |
2428746 |
aggaaaaggagggtttggttaggaacatttgagacagctgaagaagcagctagagcatatgatgaagcagccattctaatgagtggaagaaatgcaaaaa |
2428647 |
T |
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| Q |
790 |
ccaatttccct |
800 |
Q |
| |
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| T |
2428646 |
caaatttccct |
2428636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 690 - 760
Target Start/End: Original strand, 1726243 - 1726313
Alignment:
| Q |
690 |
aggaagagaagggtatggctaggtacatttgagacagcagaggctgcagccagagcatatgatcaagcagc |
760 |
Q |
| |
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||||||| ||| ||||| |||| |||||||| |||||||| | |||||| |||||||||||| ||||||| |
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| T |
1726243 |
aggaagacaagaatatggttaggaacatttgaaacagcagaagatgcagcaagagcatatgatgaagcagc |
1726313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 688 - 800
Target Start/End: Original strand, 49532564 - 49532676
Alignment:
| Q |
688 |
acaggaagagaagggtatggctaggtacatttgagacagcagaggctgcagccagagcatatgatcaagcagccatattgatgaatggaaaaaatgccaa |
787 |
Q |
| |
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|||| ||||||||||| ||| |||| ||||||||||| ||||| || ||||| ||||||||||||||||| || || ||||||||||| ||| ||| || |
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| T |
49532564 |
acagaaagagaagggtgtggttaggaacatttgagacggcagaagcagcagcaagagcatatgatcaagctgcaattttgatgaatggtcaaagtgcaaa |
49532663 |
T |
|
| Q |
788 |
aaccaatttccct |
800 |
Q |
| |
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| T |
49532664 |
gactaatttccct |
49532676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 360 - 421
Target Start/End: Original strand, 49532342 - 49532403
Alignment:
| Q |
360 |
aagttcagaggagttagacaacgacagtggggctcatgggtctcagaaattcgtcacccttt |
421 |
Q |
| |
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|||||||||||||| || || || ||||||||||| ||||| ||||||||||| |||||||| |
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| T |
49532342 |
aagttcagaggagtcaggcagcgccagtggggctcttgggtgtcagaaattcgccacccttt |
49532403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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