View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3376-Insertion-5 (Length: 696)
Name: NF3376-Insertion-5
Description: NF3376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3376-Insertion-5 |
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Alignment Details
Target: chr8 (Bit Score: 548; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 548; E-Value: 0
Query Start/End: Original strand, 7 - 578
Target Start/End: Original strand, 8277269 - 8277840
Alignment:
| Q |
7 |
agttccacaacttcaagatgtcacacaccattcaagagttcatcgcctgcgcgccataacactcctgctagtaggtcaggaccattggcattatctaaca |
106 |
Q |
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| T |
8277269 |
agttccacaacttcaagatgtcacacaccattcaagagttcatcgcctgcgcgccataacactcctgctagtaggtcaggaccattggcattatctaaca |
8277368 |
T |
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| Q |
107 |
ttgacagcaatggatgcagtgttgatgctattcagctagaagagtgtcatttttctaaactgcaatttggaacgacaaagtatgatttggttgcaccaaa |
206 |
Q |
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| T |
8277369 |
ttgacagcaatggatgcagtgttgatgctattcagctagaagagtgtcatttttctaaactgcaatttggaacgacaaagtatgatttggttgcaccaaa |
8277468 |
T |
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| Q |
207 |
ttggagctcaagtgaagaggaggaaaaggaaatatcgaaaagtttgagacgtaatgctagtttgaaggccgattctgattgtatagctgccagttgggaa |
306 |
Q |
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| T |
8277469 |
ttggagctcaagtgaagaggaggaaaaggaaatatcgaaaagtttgagacataatgctagtttgaaagccgattctgattgtatagctgccagttgggaa |
8277568 |
T |
|
| Q |
307 |
gaagatgagaagaacaagtgctgtcttaggtaactaaactataccttacaaaccaatgttttaaaaatttaatcgaaaagttcaattggttgaaccgtga |
406 |
Q |
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| T |
8277569 |
gaagatgagaagaacaagtgctgtcttaggtaactaaactataccttacaaaccaatgttttaaaaatttaatcgaaaagttcaattggttgaaccgtga |
8277668 |
T |
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| Q |
407 |
accacactttcttcacttaggttattttagcggttcaatcgtgattttgttccgattttaagtagttgaaccttgacctgatgccggtttgatttttaaa |
506 |
Q |
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| T |
8277669 |
accacactttcttcacttaggttattttagctgttcaatcgtgattttgttctgattttaagtagttgaacattgacctgatgccggtttgatttttaaa |
8277768 |
T |
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| Q |
507 |
acattgcttacaatttaactgctaaaacgaccattttcgtcgatgaactgacaccttaccttttctacttca |
578 |
Q |
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| T |
8277769 |
acattgcttacaatttaactgctaaaacgaccattttcgtcgatgaactgacaccttaccttctctacttca |
8277840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 627 - 679
Target Start/End: Original strand, 8277837 - 8277889
Alignment:
| Q |
627 |
ttcaacttatcatatagtttcatgcattcatcttatttgcattgggtagcact |
679 |
Q |
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| T |
8277837 |
ttcaacttatcatatagtttcatgcattcatcttatttgcattggctagcact |
8277889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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