View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3376-Insertion-6 (Length: 691)
Name: NF3376-Insertion-6
Description: NF3376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3376-Insertion-6 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 470; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 222 - 691
Target Start/End: Original strand, 4031736 - 4032205
Alignment:
| Q |
222 |
gaactgacctcgaagtgcattgttcaaattgccattggaaataaaatcacttataagaagcttttcatcatgtgcccaataataagctctcaacctcaca |
321 |
Q |
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| T |
4031736 |
gaactgacctcgaagtgcattgttcaaattgccattggaaataaaatcacttataagaagcttttcatcatgtgcccaataataagctctcaacctcaca |
4031835 |
T |
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| Q |
322 |
atattaggatgcttaaccttcccaatggtttgcacctcagctacaaactccttatacttctcttctccaccctcccctaatctcctcaccgccaccggca |
421 |
Q |
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| T |
4031836 |
atattaggatgcttaaccttcccaatggtttgcacctcagctacaaactccttatacttctcttctccaccctcccctaatctcctcaccgccaccggca |
4031935 |
T |
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| Q |
422 |
tcccatttccaagcaccaccttatacacaatccctaatgcactcttccctaacacatatgctgatgccttcaaaagctcatcaagctcaatcctaaaacc |
521 |
Q |
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| T |
4031936 |
tcccatttccaagcaccaccttatacacaatccctaatgcactcttccctaacacatatgctgatgccttcaaaagctcatcaagctcaatcctaaaacc |
4032035 |
T |
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| Q |
522 |
tttgtcaattgtcaccaattcaccttctcctttccctcctccatctacatctacttcactctcatcattaccttcctcattcttcaaactatttatacat |
621 |
Q |
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| T |
4032036 |
tttgtcaattgtcaccaattcaccttctcctttccctcctccatctacatctacttcactctcatcattaccttcctcattcttcaaactatttatacat |
4032135 |
T |
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| Q |
622 |
ggaagcaaagtacaagcactacctttctcatcctcattatcattgccaaatcctattctcttccttatgc |
691 |
Q |
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| T |
4032136 |
ggaagcaaagtacaagcactacctttctcatcctcattatcattgccaaatcctattctcttccttatgc |
4032205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 8 - 165
Target Start/End: Original strand, 4031522 - 4031679
Alignment:
| Q |
8 |
tggatcccctagagctgttgtagcataaaacagctctagaggactcgaattcaatgtaggcttctctctcgatatttaaagagtgaatgtacttataatt |
107 |
Q |
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| T |
4031522 |
tggatcccctagagctgttgtagcataaaacagctctagaggactcgaattcaatgtaggcttctctctcgatatttaaagagtgaatgtacttataatt |
4031621 |
T |
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| Q |
108 |
atgataacattaatattttcaagtgcataacaactatcaaaactttgaacctaatttg |
165 |
Q |
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| T |
4031622 |
atgataacattaatattttcaagtgcataacaactatcaaaactttgaacctaatttg |
4031679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 116; Significance: 1e-58; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 246 - 553
Target Start/End: Complemental strand, 25882910 - 25882603
Alignment:
| Q |
246 |
caaattgccattggaaataaaatcacttataagaagcttttcatcatgtgcccaataataagctctcaacctcacaatattaggatgcttaaccttccca |
345 |
Q |
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| T |
25882910 |
caaattgccattagaaacaaaatcactaatcaaaagcttttcatcatgagcccaataataagctcttaacttaacaatattaggatgtttcactttccca |
25882811 |
T |
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| Q |
346 |
atggtttgcacctcagctacaaactccttatacttctcttctccaccctcccctaatctcctcaccgccaccggcatcccatttccaagcaccaccttat |
445 |
Q |
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|| | ||| || |||| |||| ||||||||| | | ||| ||||| ||||| ||||||||||| || || || | |||||| |||||||| ||||||| |
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| T |
25882810 |
attgcttgaacttcagtagcaaattccttatacctttgttcaccaccttcccccaatctcctcacagctacaggtaccccattcccaagcactaccttat |
25882711 |
T |
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| Q |
446 |
acacaatccctaatgcactcttccctaacacatatgctgatgccttcaaaagctcatcaagctcaatcctaaaacctttgtcaattgtcaccaattcacc |
545 |
Q |
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| T |
25882710 |
acacaatccctaacccacttttccctaacacatatgcagaagcccttaacaattcatcaagttcaaagctaaaacctttatcaattgccaccaattcacc |
25882611 |
T |
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| Q |
546 |
ttctcctt |
553 |
Q |
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|||||||| |
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| T |
25882610 |
ttctcctt |
25882603 |
T |
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