View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3376-Insertion-7 (Length: 691)
Name: NF3376-Insertion-7
Description: NF3376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3376-Insertion-7 |
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Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 8 - 279
Target Start/End: Original strand, 15406898 - 15407169
Alignment:
| Q |
8 |
cctataagcatgaccaagattaagagtttcattaggcctaagcaacttaacacgagtaaacctaactgtcttttgttcttgattctgttcttgaggttga |
107 |
Q |
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| T |
15406898 |
cctataagcatgaccaagattaagagtttcattaggcctaagcaacttaacacgagtaaacctaactgtcttttgttcttgattctgttcttgaggttga |
15406997 |
T |
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| Q |
108 |
ggaggtaatggcataatcaatgaaacatagtgaccaggattggctttcataacttcactagcagttactggccaatacaatctatctatcttcccacatg |
207 |
Q |
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| T |
15406998 |
ggaggtaatggcataatcaatgaaacatagtgaccaggattggttttcataacttcactagcagttactggccaatacaatctatctatcttcccacatg |
15407097 |
T |
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| Q |
208 |
gatgttggatcacaagaactgcagcatcaacagcttgacaatttcccatagaaaagaaagatgaagaaaatt |
279 |
Q |
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| T |
15407098 |
gatgttggatcacaagaactgcagcatcaacagcttgacaatttcccatagaaaagaaagatgaagaaaatt |
15407169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 350 - 571
Target Start/End: Original strand, 15407240 - 15407461
Alignment:
| Q |
350 |
gtaagcaaaagtctctatctatacagctcctactagcaccccacaaatatagtaaaatcaggttctaaagaggttgtctttgtttttgttctctaacaat |
449 |
Q |
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| T |
15407240 |
gtaagcaaaagtctctatctatacagctcctactagcaccccacaaatatagtaaaatcaggttctaaagaggttgtctttgtttttgttctctaacaat |
15407339 |
T |
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| Q |
450 |
aattattagaccttgtcttcacaacaacttgatatcattcattatatatgtgcttggcaagtcaatttatgaaacttaagaattgcatagggaagggtgt |
549 |
Q |
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| T |
15407340 |
aattattagaccttgtcttcacaacaacttgatatcattcattatatatgtgcttggcaagtcaatttatgaaacttaagaattgcatagggaagggtgt |
15407439 |
T |
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| Q |
550 |
gacaaaaatattgtgaagcttc |
571 |
Q |
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| T |
15407440 |
gacaaaaatattgtgaagcttc |
15407461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 619 - 687
Target Start/End: Original strand, 15407507 - 15407575
Alignment:
| Q |
619 |
ataatgactatagttattaaaatattacgaataaatggaggagttgaagttcgaactccgatctttatt |
687 |
Q |
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| T |
15407507 |
ataattactatagttattaaaatattacaaataaatggaggagttgaagttcgaactccgatctttatt |
15407575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 256
Target Start/End: Original strand, 26461093 - 26461240
Alignment:
| Q |
109 |
gaggtaatggcataatcaatgaaacatagtgaccaggattggctttcataacttcactagcagttactggccaatacaatctatctatcttcccacatgg |
208 |
Q |
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| T |
26461093 |
gaggcaatggcatgatgagtgacacataataaccaggatttgctctcatgacataacttgcactcactgaccaatacaatctctcaatcttcccactagg |
26461192 |
T |
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| Q |
209 |
atgttggatcacaagaactgcagcatcaacagcttgacaatttcccat |
256 |
Q |
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| T |
26461193 |
gtgttggatcactagtgctgcagcatctattgtttgacaattccccat |
26461240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 256
Target Start/End: Complemental strand, 44080901 - 44080798
Alignment:
| Q |
153 |
ttcataacttcactagcagttactggccaatacaatctatctatcttcccacatggatgttggatcacaagaactgcagcatcaacagcttgacaatttc |
252 |
Q |
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||||| |||||||||||||| |||||||||||||| || ||| || ||| ||| ||||| || |||||| ||| | ||||| |||||||||||||| |
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| T |
44080901 |
ttcatcacttcactagcagtgactggccaatacaacctttcttctttaccatttggttgttgtattacaagagttgctgtatcaatagcttgacaatttc |
44080802 |
T |
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| Q |
253 |
ccat |
256 |
Q |
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|||| |
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| T |
44080801 |
ccat |
44080798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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