View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3376-Insertion-8 (Length: 667)
Name: NF3376-Insertion-8
Description: NF3376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3376-Insertion-8 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 622; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 622; E-Value: 0
Query Start/End: Original strand, 6 - 667
Target Start/End: Original strand, 35448288 - 35448948
Alignment:
| Q |
6 |
caacacatatatcatgcaagtggcttcctaattctggtcctaacaatagaagtaaagaacatacctaagttaatgatgatcaaagaccgtcaactattga |
105 |
Q |
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| T |
35448288 |
caacacatatatcatgcaagtggcttcctaatt-tggtcctaacaatagaagtaaagaacatacctaagttaatgatgatcaaagaccgtcaactattga |
35448386 |
T |
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| Q |
106 |
ctttggaagtcagcatatcaggagtttcaggaatgttataaagaccaaaaggatcgtcgtcaggttcacctgttaaacaaggagatgagaatcagtactg |
205 |
Q |
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| T |
35448387 |
ctttagaagtcagcatatcaggagtttcaggaatgttataaagaccaaaaggatcgtcgtcaggttcacctgttaaacaaggagatgagaatcagtactg |
35448486 |
T |
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| Q |
206 |
gttatgattaatccaaaataagctttgaacattttatttaaacgcgcacattgacccacagaaacacaagagagaggacataccagaaaacagagaaaca |
305 |
Q |
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| T |
35448487 |
gttatgattaatccaaactaagctttgaacattttatttaaacatgcacattgacccacagaaacacaagagagaggacataccagaaaacagagaaaca |
35448586 |
T |
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| Q |
306 |
agatccggaaagctagaacaaatgtttagaaaatccataactgcttcattgtcagaatctgagttggactcgacaccagagattggcatagctgaagcat |
405 |
Q |
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| T |
35448587 |
agatccggaaagctagaacaagtgtttagaaaatccataactgcttcattgtcagaatctgagttggactcgataccagagattggcatagctgaagcat |
35448686 |
T |
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| Q |
406 |
cgcggacatttgagccggtctccacggcatttctatcagcaccagacatgtgaggaaaacttgaatattcaggttgtactatggccatctgcccattaac |
505 |
Q |
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| T |
35448687 |
cgcggacatttgagccggtctccacggcatttctatcagcaccagacatgtgaggaaaacttgaatattcaggttgtactatggccatctgcccattaac |
35448786 |
T |
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| Q |
506 |
tccttgctgcaaatccatgtttgagttctgactatgatgcatgcttaaaatatctccgtgagcagacatctcaaccatacgaaatgatgatccaccatta |
605 |
Q |
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| T |
35448787 |
tccttgctgcaaatccatgtttgagttctgactatgatgcatgcttaaaatatctccgtgagcagacatctcaaccatatgaaatgatgatccaccatta |
35448886 |
T |
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| Q |
606 |
ttatagattggcatagctgatgcattcctgacaattgggcaggtctccatgacattttcatc |
667 |
Q |
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| T |
35448887 |
ctatagattggcatagctgatgcattcctgacaattgggcaggtctccatgacattttcatc |
35448948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 385 - 667
Target Start/End: Original strand, 35448891 - 35449179
Alignment:
| Q |
385 |
agattggcatagctgaagcatcgcggacatttgagccggtctccacggcatttctatcagcaccagacatg---tgaggaaaacttgaatattcaggttg |
481 |
Q |
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| T |
35448891 |
agattggcatagctgatgcattcctgacaattgggcaggtctccatgacattttcatcaacaccaaacatgctaggagaagaacttggatattcaggttc |
35448990 |
T |
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| Q |
482 |
tactatggccatctgcccattaactccttgctgcaaatccatgtttgagttctgactatgatgcatgcttaaaatatctccgtgagcagacatctcaacc |
581 |
Q |
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| T |
35448991 |
tgttatggccatccccccattaattccttgttgaaaacccatgttcgagttctgactataatgcatgcttgaaaaatctccatgagcagacatatcaacc |
35449090 |
T |
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| Q |
582 |
atacgaaatgatgatcc---accattattatagattggcatagctgatgcattcctgacaattgggcaggtctccatgacattttcatc |
667 |
Q |
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| T |
35449091 |
atacgaaatggtgatccagtaccgttattaaagattggcgtagctgatgtattgccgacaattgggcaggcctccaggacattttcatc |
35449179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 435 - 598
Target Start/End: Original strand, 35440921 - 35441087
Alignment:
| Q |
435 |
tttctatcagcaccagacatgtgagga---aaacttgaatattcaggttgtactatggccatctgcccattaactccttgctgcaaatccatgtttgagt |
531 |
Q |
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| T |
35440921 |
tttccatcagcaccaaacatgtgaggagaaaaacttgaattatcaggtttggatatggtcattcccccattaactccttgttgcatacccatgtttgagt |
35441020 |
T |
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| Q |
532 |
tctgactatgatgcatgcttaaaatatctccgtgagcagacatctcaaccatacgaaatgatgatcc |
598 |
Q |
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| T |
35441021 |
tctgagtaaaagtcatgcttggaatatctccatgagcagacgtatcaaccataccaaatgatgatcc |
35441087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 499 - 607
Target Start/End: Original strand, 35449239 - 35449347
Alignment:
| Q |
499 |
cattaactccttgctgcaaatccatgtttgagttctgactatgatgcatgcttaaaatatctccgtgagcagacatctcaaccatacgaaatgatgatcc |
598 |
Q |
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| T |
35449239 |
cattaattccttgttgaaagcccatgttcgtgttctgactataatgcatggttgaacaatctccttgagcagacacgtcaaccataccaaacgatgatcc |
35449338 |
T |
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| Q |
599 |
accattatt |
607 |
Q |
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| T |
35449339 |
accattatt |
35449347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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