View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3376-Insertion-9 (Length: 577)
Name: NF3376-Insertion-9
Description: NF3376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3376-Insertion-9 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 483; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 6 - 577
Target Start/End: Original strand, 30466183 - 30466750
Alignment:
| Q |
6 |
catattggcgtgaagagaattagggacctcaataccaaaccattcatcaatgctatgaagaaaagatacaatgcagatgaagctgaaattagagcttcaa |
105 |
Q |
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| T |
30466183 |
catattggtgtgaagagaattagggacctcaataccaaaccattcatcaatgctatgaagaaaagatacaatgcagatgaagctgaaattagagcttcaa |
30466282 |
T |
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| Q |
106 |
gactgtgttctttatgggtcgaaaatataaaggacacaaattggaatccagtcaaaattgttttcgttgatggggtagctaaggtatagtcctaactcct |
205 |
Q |
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| T |
30466283 |
gactgtgttctttatgggtcgaaaatataaaggacacaaattggaatccagtcaaaattgttttcgttgatggggtagctaaggtatagttctaactcct |
30466382 |
T |
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| Q |
206 |
gttacttttaatcgaatttggttcatcatcatctgttgcttgttttattacataggacaggaaatatttgatcgatggaccctttatatttannnnnnn- |
304 |
Q |
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| T |
30466383 |
gttacttttaatcgaatttggttcatc------tgttgcttgttttattacataggacaggaaatatttgatcgatggaccctttatttttatttttttt |
30466476 |
T |
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| Q |
305 |
-attatagcaagttatgattaacgatgcacatggaaagttgaatcggctgaagaaaagaatcggtcaagcagcatataatgatatagtggcagctttgat |
403 |
Q |
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| T |
30466477 |
tattatagcaagttataattaacgatacacatggaaagttgaatcggctgaagaaaagaatcggtcaagcagcatataatgatatagtggcagctttgat |
30466576 |
T |
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| Q |
404 |
agagaaaaatgaaaacgattctagtggtgaataccctctatttgaattatggaactatgaaaagaaaaggagagcaacattgcaggaaggagtagagttt |
503 |
Q |
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| T |
30466577 |
agagaaaaatgaaaacgattctagtggtgaataccctctatttgaattatggaactatgaaaagaaaaggagagcaacattgcaggaaggagtagagttt |
30466676 |
T |
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| Q |
504 |
ctgcatcaaaatcgatccaataaacgcaagagggggaacggtgacctagctgataatgaccattttagatttat |
577 |
Q |
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| T |
30466677 |
ctgtttcaaaatcgatctaataaacgcaagagggggaacggtgacccagctgataatgaccattttagatttat |
30466750 |
T |
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