View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3376_high_10 (Length: 601)
Name: NF3376_high_10
Description: NF3376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3376_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 418; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 147 - 580
Target Start/End: Complemental strand, 4417186 - 4416753
Alignment:
| Q |
147 |
aattgtgatgtccggcaccgtagcgcaccctgcacctgttatgctcggaccatggttattagtgcatctgttggacacctgctatgagaccactcaaatg |
246 |
Q |
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| T |
4417186 |
aattgtgatgtccggcaccgtagcgcaccctgcacctgttatgctcggaccatggttattagtgcatctgttggacacctgctatgagaccactcaaatc |
4417087 |
T |
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| Q |
247 |
atagtcatgttagattgaatgagatgacctataaacaaacaagtaagggttgaattagacataaaccaaattctaacactaataaagcaagaaaaccata |
346 |
Q |
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| T |
4417086 |
atagtcatgttagattgaatgagatgacctataaacaaacaagtaagggttgaattagacataaaccaaattctaacactaataaaggaagaaaaccata |
4416987 |
T |
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| Q |
347 |
catatacatactagcaattgcaacattattatactggttgagagaaagaacattatttaatgaatcataacaagagtgtgacttctgtcggtttggtctg |
446 |
Q |
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| T |
4416986 |
catatacatactagcaattgcaacattattatactggttgagagaaagaacattatttaatgaatcataacaagagtgtgacttctgtctgtttggtctg |
4416887 |
T |
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| Q |
447 |
atttaaatttattagcggagccggagtatgttgatccaccctcaaatctacttatgtgtatgcaataattgttaattgacttttaattaactgcatctta |
546 |
Q |
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| T |
4416886 |
atttaaatttattagcggagccggagtatgttgatccaccctcaaatctacttatgtgtatgcaataattgttaattgacttttaattaactgcatctca |
4416787 |
T |
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| Q |
547 |
aataatgtttactaattttcttgggtgaagggtc |
580 |
Q |
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| T |
4416786 |
aataatgtttactaattttcttgggtgaagggtc |
4416753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 21 - 114
Target Start/End: Complemental strand, 4417295 - 4417202
Alignment:
| Q |
21 |
gaggcatcctctattacgggagttggttagtcgcggttgtcaaattgttatcttt---tattatatataactaataatatgtttgggtcttgtagtg |
114 |
Q |
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| T |
4417295 |
gaggcatcctctattacgggagttagttagtcgcgcttgtcaaattgttatcttttactattatatataac---taatatgtttgggtcttgtagtg |
4417202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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