View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3376_high_100 (Length: 233)

Name: NF3376_high_100
Description: NF3376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3376_high_100
NF3376_high_100
[»] chr5 (10 HSPs)
chr5 (1-211)||(26148139-26148350)
chr5 (140-201)||(22845795-22845856)
chr5 (140-197)||(29799084-29799141)
chr5 (140-195)||(19006848-19006903)
chr5 (150-201)||(24263760-24263811)
chr5 (140-206)||(23266847-23266913)
chr5 (140-201)||(26122418-26122479)
chr5 (140-201)||(34488893-34488954)
chr5 (140-200)||(25572478-25572538)
chr5 (140-200)||(28666529-28666589)
[»] chr8 (14 HSPs)
chr8 (138-200)||(24389793-24389855)
chr8 (142-213)||(15058506-15058577)
chr8 (140-200)||(19705023-19705083)
chr8 (140-200)||(23867829-23867889)
chr8 (140-199)||(21695413-21695472)
chr8 (140-198)||(4007151-4007209)
chr8 (140-201)||(24381325-24381387)
chr8 (142-200)||(24583173-24583231)
chr8 (140-201)||(6286318-6286379)
chr8 (139-200)||(19265859-19265920)
chr8 (140-201)||(19791429-19791490)
chr8 (138-211)||(24518586-24518658)
chr8 (150-206)||(14077153-14077208)
chr8 (150-202)||(17835578-17835630)
[»] chr4 (10 HSPs)
chr4 (140-201)||(9849707-9849768)
chr4 (140-201)||(25025142-25025203)
chr4 (138-192)||(19335223-19335277)
chr4 (154-206)||(18447454-18447506)
chr4 (140-192)||(19538883-19538935)
chr4 (140-201)||(17277881-17277942)
chr4 (140-197)||(19919139-19919196)
chr4 (140-201)||(22350240-22350301)
chr4 (140-200)||(15166505-15166565)
chr4 (140-200)||(17434471-17434531)
[»] chr2 (14 HSPs)
chr2 (140-211)||(32130699-32130770)
chr2 (140-211)||(32137912-32137983)
chr2 (150-211)||(32141401-32141462)
chr2 (140-204)||(32139334-32139398)
chr2 (133-199)||(25882563-25882629)
chr2 (150-200)||(22569091-22569141)
chr2 (138-200)||(26313215-26313277)
chr2 (140-178)||(34369382-34369420)
chr2 (140-201)||(32087084-32087145)
chr2 (140-201)||(35680100-35680161)
chr2 (151-199)||(11464329-11464377)
chr2 (140-184)||(21905779-21905823)
chr2 (140-200)||(28918225-28918285)
chr2 (140-184)||(29144688-29144732)
[»] chr1 (9 HSPs)
chr1 (138-201)||(15571686-15571749)
chr1 (139-201)||(9782978-9783040)
chr1 (140-200)||(11845221-11845281)
chr1 (140-200)||(21663090-21663150)
chr1 (140-191)||(15630933-15630984)
chr1 (140-201)||(33192388-33192449)
chr1 (140-200)||(12210302-12210362)
chr1 (150-206)||(14235294-14235350)
chr1 (140-200)||(14782567-14782627)
[»] chr6 (10 HSPs)
chr6 (140-201)||(21687129-21687190)
chr6 (140-200)||(1636670-1636730)
chr6 (140-200)||(17847817-17847877)
chr6 (150-201)||(22564559-22564610)
chr6 (140-201)||(6628974-6629035)
chr6 (135-200)||(14727171-14727236)
chr6 (140-200)||(4340701-4340761)
chr6 (140-199)||(13216304-13216364)
chr6 (140-200)||(19246313-19246373)
chr6 (140-188)||(34451131-34451179)
[»] chr3 (7 HSPs)
chr3 (140-201)||(18535806-18535867)
chr3 (140-211)||(819846-819917)
chr3 (140-195)||(19573576-19573631)
chr3 (140-211)||(7805768-7805839)
chr3 (138-200)||(12517327-12517389)
chr3 (138-200)||(25850946-25851008)
chr3 (140-200)||(19912617-19912677)
[»] chr7 (11 HSPs)
chr7 (136-200)||(4450708-4450772)
chr7 (143-201)||(14195784-14195842)
chr7 (137-201)||(3736372-3736436)
chr7 (140-200)||(18986744-18986804)
chr7 (140-200)||(19001372-19001432)
chr7 (150-201)||(6018394-6018445)
chr7 (140-195)||(9978327-9978382)
chr7 (140-200)||(2927911-2927971)
chr7 (140-200)||(11804735-11804795)
chr7 (140-200)||(19201322-19201382)
chr7 (140-200)||(26249075-26249135)
[»] scaffold0386 (1 HSPs)
scaffold0386 (150-201)||(4882-4933)
[»] scaffold0019 (2 HSPs)
scaffold0019 (150-211)||(24828-24889)
scaffold0019 (152-211)||(35204-35263)
[»] scaffold0094 (1 HSPs)
scaffold0094 (159-204)||(12263-12308)
[»] scaffold0024 (1 HSPs)
scaffold0024 (140-201)||(41375-41435)
[»] scaffold0111 (1 HSPs)
scaffold0111 (140-200)||(21477-21537)


Alignment Details
Target: chr5 (Bit Score: 148; Significance: 3e-78; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 26148139 - 26148350
Alignment:
Q  1 aatcccaccagatttaattttaaacaaataaattatcaacatacttccctnnnnnnnn-ttatcaacattctagatttgctaggatatatcattgttggt 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||| ||||||||||||||||| ||    
T  26148139 aatcccaccagatttaattttaaacaaataaattatcaacatacttccctaaaaaaaaattatcaacattctagatttgttaggatatatcattgttagt 26148238  T
Q  100 taaaaactagttatttgaggttacttgttttacaagtaaatgatgacagatcatcttatgttattcttagtaagttttttagtcaattttagtaggtttt 199  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||  |||||||||| |||||||||||||||||||||||| ||||    
T  26148239 taaaagctagttatttgaggttacttgttttacaagtaaatgatgacaaatcatcttacattattcttagcaagttttttagtcaattttagtagatttt 26148338  T
Q  200 acatccataata 211  Q
    ||||||||||||    
T  26148339 acatccataata 26148350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 201
Target Start/End: Original strand, 22845795 - 22845856
Alignment:
Q  140 tgatgacagatcatcttatgttattcttagtaagttttttagtcaattttagtaggttttac 201  Q
    ||||| |||||||||||||||||||||||| | |||| ||||| |||| |||||||||||||    
T  22845795 tgatggcagatcatcttatgttattcttagcatgtttgttagttaattatagtaggttttac 22845856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 197
Target Start/End: Complemental strand, 29799141 - 29799084
Alignment:
Q  140 tgatgacagatcatcttatgttattcttagtaagttttttagtcaattttagtaggtt 197  Q
    |||||||| |||||||||| |||||||||||| |||||||||||| ||||| ||||||    
T  29799141 tgatgacacatcatcttatattattcttagtatgttttttagtcatttttaataggtt 29799084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 195
Target Start/End: Original strand, 19006848 - 19006903
Alignment:
Q  140 tgatgacagatcatcttatgttattcttagtaagttttttagtcaattttagtagg 195  Q
    ||||||||||||||||||  |||||||||||| |||||| |||  |||||||||||    
T  19006848 tgatgacagatcatcttacattattcttagtatgtttttcagtttattttagtagg 19006903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 201
Target Start/End: Original strand, 24263760 - 24263811
Alignment:
Q  150 tcatcttatgttattcttagtaagttttttagtcaattttagtaggttttac 201  Q
    |||||||| ||||||||||| | |||||| |||| |||||||||||||||||    
T  24263760 tcatcttacgttattcttagcatgtttttcagtctattttagtaggttttac 24263811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 206
Target Start/End: Complemental strand, 23266913 - 23266847
Alignment:
Q  140 tgatgacagatcatcttatgttattcttagtaagttttttagtcaattttagtaggttttacatcca 206  Q
    ||||||||| ||||||||  ||||| || | | |||||||||||| ||| |||||||||||||||||    
T  23266913 tgatgacaggtcatcttacattatttttggcatgttttttagtcattttcagtaggttttacatcca 23266847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 201
Target Start/End: Complemental strand, 26122479 - 26122418
Alignment:
Q  140 tgatgacagatcatcttatgttattcttagtaagttttttagtcaattttagtaggttttac 201  Q
    ||||||||| | ||||||  |||||||||| | |||||||||||  ||||||||||||||||    
T  26122479 tgatgacaggttatcttaaattattcttagcatgttttttagtcgtttttagtaggttttac 26122418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 201
Target Start/End: Complemental strand, 34488954 - 34488893
Alignment:
Q  140 tgatgacagatcatcttatgttattcttagtaagttttttagtcaattttagtaggttttac 201  Q
    ||||| ||| |||||||| ||||||||||| | |||||| ||||| |||||||||| |||||    
T  34488954 tgatggcaggtcatcttacgttattcttagcatgtttttcagtcatttttagtaggatttac 34488893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 200
Target Start/End: Original strand, 25572478 - 25572538
Alignment:
Q  140 tgatgacagatcatcttatgttattcttagtaagttttttagtcaattttagtaggtttta 200  Q
    ||||||||  ||||| || ||||||||||| | |||||| ||||||||| |||||||||||    
T  25572478 tgatgacaagtcatcctacgttattcttagcatgtttttcagtcaatttcagtaggtttta 25572538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 200
Target Start/End: Complemental strand, 28666589 - 28666529
Alignment:
Q  140 tgatgacagatcatcttatgttattcttagtaagttttttagtcaattttagtaggtttta 200  Q
    |||| ||||||||||||||||||||||||  | |||||| | ||| ||| |||||||||||    
T  28666589 tgataacagatcatcttatgttattcttatcatgtttttcattcattttcagtaggtttta 28666529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 138 - 200
Target Start/End: Complemental strand, 24389855 - 24389793
Alignment:
Q  138 aatgatgacagatcatcttatgttattcttagtaagttttttagtcaattttagtaggtttta 200  Q
    ||||||||||| |||||||| |||||||||||||||||||||||| | ||| |||||||||||    
T  24389855 aatgatgacaggtcatcttacgttattcttagtaagttttttagttattttcagtaggtttta 24389793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 142 - 213
Target Start/End: Original strand, 15058506 - 15058577
Alignment:
Q  142 atgacagatcatcttatgttattcttagtaagttttttagtcaattttagtaggttttacatccataatata 213  Q
    |||||| ||||  ||| ||||||||||| | |||||||||||| ||||||||||||||||||||| ||||||    
T  15058506 atgacaaatcaatttacgttattcttagcatgttttttagtcatttttagtaggttttacatccaaaatata 15058577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 200
Target Start/End: Complemental strand, 19705083 - 19705023
Alignment:
Q  140 tgatgacagatcatcttatgttattcttagtaagttttttagtcaattttagtaggtttta 200  Q
    ||||||||  |||||||| ||||||||||||| |||||| ||||| ||| |||||||||||    
T  19705083 tgatgacatgtcatcttacgttattcttagtatgtttttcagtcattttcagtaggtttta 19705023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 200
Target Start/End: Original strand, 23867829 - 23867889
Alignment:
Q  140 tgatgacagatcatcttatgttattcttagtaagttttttagtcaattttagtaggtttta 200  Q
    ||||||||| |||||||| || |||||||||| |||||| || || |||||||||||||||    
T  23867829 tgatgacaggtcatcttacgtaattcttagtatgtttttcaggcatttttagtaggtttta 23867889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 199
Target Start/End: Original strand, 21695413 - 21695472
Alignment:
Q  140 tgatgacagatcatcttatgttattcttagtaagttttttagtcaattttagtaggtttt 199  Q
    ||||||||  |||||||| ||||||||||| | |||||| ||||||||| ||||||||||    
T  21695413 tgatgacatgtcatcttacgttattcttagcatgtttttcagtcaatttcagtaggtttt 21695472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 198
Target Start/End: Original strand, 4007151 - 4007209
Alignment:
Q  140 tgatgacagatcatcttatgttattcttagtaagttttttagtcaattttagtaggttt 198  Q
    ||||||||| ||||||||||||| | |||| | |||||| ||||| |||||||||||||    
T  4007151 tgatgacaggtcatcttatgttaatattagcatgtttttcagtcatttttagtaggttt 4007209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 201
Target Start/End: Original strand, 24381325 - 24381387
Alignment:
Q  140 tgatgacagatcatcttatgttattcttagtaagtttttt-agtcaattttagtaggttttac 201  Q
    ||||||||| |||||||| ||||||||||| | ||||||| ||||||||| || |||||||||    
T  24381325 tgatgacaggtcatcttaagttattcttagcatgttttttcagtcaatttcagcaggttttac 24381387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 200
Target Start/End: Original strand, 24583173 - 24583231
Alignment:
Q  142 atgacagatcatcttatgttattcttagtaagttttttagtcaattttagtaggtttta 200  Q
    ||||||| |||| ||||||||||||||| | |||||| ||||| ||||||||| |||||    
T  24583173 atgacaggtcattttatgttattcttagcatgtttttcagtcatttttagtagatttta 24583231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 201
Target Start/End: Complemental strand, 6286379 - 6286318
Alignment:
Q  140 tgatgacagatcatcttatgttattcttagtaagttttttagtcaattttagtaggttttac 201  Q
    ||||||||| |||||||| ||||||||||| | || |||   ||||||||||||||||||||    
T  6286379 tgatgacaggtcatcttacgttattcttagcatgtctttctatcaattttagtaggttttac 6286318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 200
Target Start/End: Complemental strand, 19265920 - 19265859
Alignment:
Q  139 atgatgacagatcatcttatgttattcttagtaagttttttagtcaattttagtaggtttta 200  Q
    |||||||||| |||||||| ||||||||||| | |||||| |||  ||||||||||| ||||    
T  19265920 atgatgacaggtcatcttacgttattcttagcatgtttttcagtttattttagtaggattta 19265859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 201
Target Start/End: Complemental strand, 19791490 - 19791429
Alignment:
Q  140 tgatgacagatcatcttatgttattcttagtaagttttttagtcaattttagtaggttttac 201  Q
    |||||||||||||||||| |||||  |||| | |||||| |||| |||||| ||||||||||    
T  19791490 tgatgacagatcatcttacgttataattagcatgtttttcagtctattttaataggttttac 19791429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 211
Target Start/End: Original strand, 24518586 - 24518658
Alignment:
Q  138 aatgatgacagatcatcttatgttattcttagtaagttttttagtcaattttagtaggttttacatccataata 211  Q
    ||||||||||  |||||| | ||||||||||||| | |||||||| | ||| ||||||||||||||||| ||||    
T  24518586 aatgatgacatgtcatctaacgttattcttagtatg-tttttagttattttcagtaggttttacatccagaata 24518658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 206
Target Start/End: Complemental strand, 14077208 - 14077153
Alignment:
Q  150 tcatcttatgttattcttagtaagttttttagtcaattttagtaggttttacatcca 206  Q
    |||||||| ||| ||||||  | |||||||||||| |||||||||||||||||||||    
T  14077208 tcatcttacgttcttcttaacatgttttttagtca-ttttagtaggttttacatcca 14077153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 202
Target Start/End: Complemental strand, 17835630 - 17835578
Alignment:
Q  150 tcatcttatgttattcttagtaagttttttagtcaattttagtaggttttaca 202  Q
    |||||||| |||||||||||||  ||||| ||| ||||| |||||||||||||    
T  17835630 tcatcttacgttattcttagtatatttttcagttaatttcagtaggttttaca 17835578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 140 - 201
Target Start/End: Original strand, 9849707 - 9849768
Alignment:
Q  140 tgatgacagatcatcttatgttattcttagtaagttttttagtcaattttagtaggttttac 201  Q
    ||||||||| |||||||| ||||||||||||| |||||| ||||| ||||||||||||||||    
T  9849707 tgatgacaggtcatcttacgttattcttagtatgtttttcagtcatttttagtaggttttac 9849768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 201
Target Start/End: Complemental strand, 25025203 - 25025142
Alignment:
Q  140 tgatgacagatcatcttatgttattcttagtaagttttttagtcaattttagtaggttttac 201  Q
    ||||||||| |||||||| ||||||||||| | |||||| ||||| ||||||||||||||||    
T  25025203 tgatgacaggtcatcttacgttattcttagcatgtttttcagtcatttttagtaggttttac 25025142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 138 - 192
Target Start/End: Original strand, 19335223 - 19335277
Alignment:
Q  138 aatgatgacagatcatcttatgttattcttagtaagttttttagtcaattttagt 192  Q
    |||||||||||||||||||| ||||||||||| |  ||||||||||| |||||||    
T  19335223 aatgatgacagatcatcttacgttattcttagcatattttttagtcatttttagt 19335277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 206
Target Start/End: Original strand, 18447454 - 18447506
Alignment:
Q  154 cttatgttattcttagtaagttttttagtcaattttagtaggttttacatcca 206  Q
    |||||||||||||||| | |||| | ||||| |||||||||||||||||||||    
T  18447454 cttatgttattcttagcatgtttatgagtcatttttagtaggttttacatcca 18447506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 192
Target Start/End: Original strand, 19538883 - 19538935
Alignment:
Q  140 tgatgacagatcatcttatgttattcttagtaagttttttagtcaattttagt 192  Q
    ||||||| |||||||||| |||||||||||||  ||||||||||| |||||||    
T  19538883 tgatgaccgatcatcttacgttattcttagtatattttttagtcacttttagt 19538935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 201
Target Start/End: Complemental strand, 17277942 - 17277881
Alignment:
Q  140 tgatgacagatcatcttatgttattcttagtaagttttttagtcaattttagtaggttttac 201  Q
    ||||||||  |||||||| ||||||||||| | |||||| |||| ||||||||| |||||||    
T  17277942 tgatgacatgtcatcttacgttattcttagcatgtttttcagtctattttagtaagttttac 17277881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 197
Target Start/End: Original strand, 19919139 - 19919196
Alignment:
Q  140 tgatgacagatcatcttatgttattcttagtaagttttttagtcaattttagtaggtt 197  Q
    |||||||||||||||| | ||||||||||| | |||||| |||  |||||||||||||    
T  19919139 tgatgacagatcatctgacgttattcttagcatgtttttcagtttattttagtaggtt 19919196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 201
Target Start/End: Original strand, 22350240 - 22350301
Alignment:
Q  140 tgatgacagatcatcttatgttattcttagtaagttttttagtcaattttagtaggttttac 201  Q
    |||||||| |||||||||  |||||||||| | |||||| |||  |||||||||||||||||    
T  22350240 tgatgacaaatcatcttacattattcttagcatgtttttcagtttattttagtaggttttac 22350301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 200
Target Start/End: Complemental strand, 15166565 - 15166505
Alignment:
Q  140 tgatgacagatcatcttatgttattcttagtaagttttttagtcaattttagtaggtttta 200  Q
    ||||||||| ||||||||  |||||||||| | |||||| ||||| ||| |||||||||||    
T  15166565 tgatgacaggtcatcttacattattcttagcatgtttttcagtcattttcagtaggtttta 15166505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 200
Target Start/End: Complemental strand, 17434531 - 17434471
Alignment:
Q  140 tgatgacagatcatcttatgttattcttagtaagttttttagtcaattttagtaggtttta 200  Q
    ||||||||| |||||||| |||||| |||| | |||||| ||||| ||| |||||||||||    
T  17434531 tgatgacaggtcatcttacgttatttttagcatgtttttaagtcattttcagtaggtttta 17434471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 140 - 211
Target Start/End: Original strand, 32130699 - 32130770
Alignment:
Q  140 tgatgacagatcatcttatgttattcttagtaagttttttagtcaattttagtaggttttacatccataata 211  Q
    ||||||||| |||||||| ||||||||||||| |||| | ||||| |||||||| |||||||||||| ||||    
T  32130699 tgatgacaggtcatcttacgttattcttagtatgtttatcagtcatttttagtaagttttacatccagaata 32130770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 140 - 211
Target Start/End: Original strand, 32137912 - 32137983
Alignment:
Q  140 tgatgacagatcatcttatgttattcttagtaagttttttagtcaattttagtaggttttacatccataata 211  Q
    ||||||||| |||||||| |||||||||| || |||| | ||||| ||||||||||||||||||||| ||||    
T  32137912 tgatgacaggtcatcttacgttattcttattatgtttatcagtcatttttagtaggttttacatccagaata 32137983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 150 - 211
Target Start/End: Original strand, 32141401 - 32141462
Alignment:
Q  150 tcatcttatgttattcttagtaagttttttagtcaattttagtaggttttacatccataata 211  Q
    |||||||| ||||||||||||| |||| || |||| ||||||||||||||||||||| ||||    
T  32141401 tcatcttacgttattcttagtatgtttattggtcatttttagtaggttttacatccaaaata 32141462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 140 - 204
Target Start/End: Original strand, 32139334 - 32139398
Alignment:
Q  140 tgatgacagatcatcttatgttattcttagtaagttttttagtcaattttagtaggttttacatc 204  Q
    ||||||||| |||||||| ||||||||||||| |||| | ||||| |||||| ||||||||||||    
T  32139334 tgatgacaggtcatcttacgttattcttagtatgtttatcagtcatttttagcaggttttacatc 32139398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 133 - 199
Target Start/End: Original strand, 25882563 - 25882629
Alignment:
Q  133 aagtaaatgatgacagatcatcttatgttattcttagtaagttttttagtcaattttagtaggtttt 199  Q
    |||||| ||| |||||| ||||||| |||||| |||| | |||||| ||||||||||||||||||||    
T  25882563 aagtaagtgaagacagaccatcttacgttatttttagcatgtttttcagtcaattttagtaggtttt 25882629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 200
Target Start/End: Complemental strand, 22569141 - 22569091
Alignment:
Q  150 tcatcttatgttattcttagtaagttttttagtcaattttagtaggtttta 200  Q
    |||||||||||||||||||  | |||||| ||||||||| |||||||||||    
T  22569141 tcatcttatgttattcttaccatgtttttcagtcaatttcagtaggtttta 22569091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 200
Target Start/End: Complemental strand, 26313277 - 26313215
Alignment:
Q  138 aatgatgacagatcatcttatgttattcttagtaagttttttagtcaattttagtaggtttta 200  Q
    ||||||||||  ||||||||  |||||||||| | |||||||| ||||||| |||||||||||    
T  26313277 aatgatgacaagtcatcttacattattcttagcatgttttttaatcaatttcagtaggtttta 26313215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 178
Target Start/End: Complemental strand, 34369420 - 34369382
Alignment:
Q  140 tgatgacagatcatcttatgttattcttagtaagttttt 178  Q
    |||||||||||||||||||||||||||||| | ||||||    
T  34369420 tgatgacagatcatcttatgttattcttagcatgttttt 34369382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 201
Target Start/End: Complemental strand, 32087145 - 32087084
Alignment:
Q  140 tgatgacagatcatcttatgttattcttagtaagttttttagtcaattttagtaggttttac 201  Q
    ||||||||  |||||||| |||||| |||| |  |||||||||| |||||||||||||||||    
T  32087145 tgatgacatgtcatcttacgttattattagcatattttttagtctattttagtaggttttac 32087084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 201
Target Start/End: Original strand, 35680100 - 35680161
Alignment:
Q  140 tgatgacagatcatcttatgttattcttagtaagttttttagtcaattttagtaggttttac 201  Q
    |||||||||  ||||||| ||||||||||| | |||||| ||||| ||| ||||||||||||    
T  35680100 tgatgacaggccatcttacgttattcttagcatgtttttaagtcattttcagtaggttttac 35680161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 199
Target Start/End: Original strand, 11464329 - 11464377
Alignment:
Q  151 catcttatgttattcttagtaagttttttagtcaattttagtaggtttt 199  Q
    ||||||||||||||||||| | |||||  |||| |||||||||||||||    
T  11464329 catcttatgttattcttagcatgttttcaagtctattttagtaggtttt 11464377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 184
Target Start/End: Complemental strand, 21905823 - 21905779
Alignment:
Q  140 tgatgacagatcatcttatgttattcttagtaagttttttagtca 184  Q
    ||||||||| |||||||||||||||||||| | |||||| |||||    
T  21905823 tgatgacaggtcatcttatgttattcttagcatgtttttcagtca 21905779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 200
Target Start/End: Complemental strand, 28918285 - 28918225
Alignment:
Q  140 tgatgacagatcatcttatgttattcttagtaagttttttagtcaattttagtaggtttta 200  Q
    |||||||| ||||| ||| ||||||||||| | |||||| ||||| ||| |||||||||||    
T  28918285 tgatgacaaatcattttacgttattcttagcatgtttttcagtcattttcagtaggtttta 28918225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 184
Target Start/End: Complemental strand, 29144732 - 29144688
Alignment:
Q  140 tgatgacagatcatcttatgttattcttagtaagttttttagtca 184  Q
    ||||||||| |||||||| ||||||||||| | ||||||||||||    
T  29144732 tgatgacaggtcatcttacgttattcttagcatgttttttagtca 29144688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 138 - 201
Target Start/End: Original strand, 15571686 - 15571749
Alignment:
Q  138 aatgatgacagatcatcttatgttattcttagtaagttttttagtcaattttagtaggttttac 201  Q
    |||||||| ||||||||||| |||||| |||| | |||||| ||||||||||||||||||||||    
T  15571686 aatgatgatagatcatcttacgttatttttagcatgtttttcagtcaattttagtaggttttac 15571749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 139 - 201
Target Start/End: Original strand, 9782978 - 9783040
Alignment:
Q  139 atgatgacagatcatcttatgttattcttagtaagttttttagtcaattttagtaggttttac 201  Q
    ||||||||||||||||||| |||||| |||| | |||||| | || |||||||||||||||||    
T  9782978 atgatgacagatcatcttacgttattattagcatgtttttcaatctattttagtaggttttac 9783040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 200
Target Start/End: Original strand, 11845221 - 11845281
Alignment:
Q  140 tgatgacagatcatcttatgttattcttagtaagttttttagtcaattttagtaggtttta 200  Q
    |||||||||||||||||| ||||||||||| |  ||||| ||| | |||||||||||||||    
T  11845221 tgatgacagatcatcttacgttattcttagcatatttttcagttatttttagtaggtttta 11845281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 200
Target Start/End: Original strand, 21663090 - 21663150
Alignment:
Q  140 tgatgacagatcatcttatgttattcttagtaagttttttagtcaattttagtaggtttta 200  Q
    ||||||||| |||||||| ||||||||||| | |||||| ||||| ||| |||||||||||    
T  21663090 tgatgacaggtcatcttacgttattcttagcatgtttttcagtcattttcagtaggtttta 21663150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 191
Target Start/End: Original strand, 15630933 - 15630984
Alignment:
Q  140 tgatgacagatcatcttatgttattcttagtaagttttttagtcaattttag 191  Q
    ||||||||| | |||||||||||||||||| | |||||||||||| ||||||    
T  15630933 tgatgacaggttatcttatgttattcttagcatgttttttagtcatttttag 15630984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 201
Target Start/End: Complemental strand, 33192449 - 33192388
Alignment:
Q  140 tgatgacagatcatcttatgttattcttagtaagttttttagtcaattttagtaggttttac 201  Q
    ||||||||  |||||||| | ||||||||| | |||||| ||||||||| ||||||||||||    
T  33192449 tgatgacaagtcatcttacgctattcttagcatgtttttcagtcaatttcagtaggttttac 33192388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 200
Target Start/End: Complemental strand, 12210362 - 12210302
Alignment:
Q  140 tgatgacagatcatcttatgttattcttagtaagttttttagtcaattttagtaggtttta 200  Q
    |||||| || ||||||||  |||||||||| | |||||| ||||||||| |||||||||||    
T  12210362 tgatgataggtcatcttacattattcttagcatgtttttcagtcaatttcagtaggtttta 12210302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 206
Target Start/End: Original strand, 14235294 - 14235350
Alignment:
Q  150 tcatcttatgttattcttagtaagttttttagtcaattttagtaggttttacatcca 206  Q
    |||||||| |||| |||||| | |||||| ||||| |||||||||||||| ||||||    
T  14235294 tcatcttacgttactcttagcatgtttttcagtcatttttagtaggtttttcatcca 14235350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 200
Target Start/End: Complemental strand, 14782627 - 14782567
Alignment:
Q  140 tgatgacagatcatcttatgttattcttagtaagttttttagtcaattttagtaggtttta 200  Q
    ||||||||| |||||||| ||||||||||| | |||||| | ||||||| | |||||||||    
T  14782627 tgatgacaggtcatcttacgttattcttagcatgtttttcactcaatttcaataggtttta 14782567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 201
Target Start/End: Original strand, 21687129 - 21687190
Alignment:
Q  140 tgatgacagatcatcttatgttattcttagtaagttttttagtcaattttagtaggttttac 201  Q
    ||||||||  |||||||| ||||||||||| | |||||| ||||||||||||||||||||||    
T  21687129 tgatgacatgtcatcttacgttattcttagcatgtttttcagtcaattttagtaggttttac 21687190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 140 - 200
Target Start/End: Complemental strand, 1636730 - 1636670
Alignment:
Q  140 tgatgacagatcatcttatgttattcttagtaagttttttagtcaattttagtaggtttta 200  Q
    |||||||||||||||||| ||||||||||| | |||||| ||| | |||||||||||||||    
T  1636730 tgatgacagatcatcttacgttattcttagcatgtttttcagttatttttagtaggtttta 1636670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 200
Target Start/End: Complemental strand, 17847877 - 17847817
Alignment:
Q  140 tgatgacagatcatcttatgttattcttagtaagttttttagtcaattttagtaggtttta 200  Q
    |||||||||||| ||||||||||||||||| | |||||||||| | ||| |||| ||||||    
T  17847877 tgatgacagatcctcttatgttattcttagcatgttttttagttattttaagtaagtttta 17847817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 201
Target Start/End: Original strand, 22564559 - 22564610
Alignment:
Q  150 tcatcttatgttattcttagtaagttttttagtcaattttagtaggttttac 201  Q
    |||||||| ||||||||||| | |||||| ||||| ||||||||||||||||    
T  22564559 tcatcttacgttattcttagcatgtttttcagtcatttttagtaggttttac 22564610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 201
Target Start/End: Original strand, 6628974 - 6629035
Alignment:
Q  140 tgatgacagatcatcttatgttattcttagtaagttttttagtcaattttagtaggttttac 201  Q
    ||||| || ||||||||| ||||||||||| | || |||||| | |||||||||||||||||    
T  6628974 tgatgccatatcatcttacgttattcttagcatgtcttttagactattttagtaggttttac 6629035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 200
Target Start/End: Complemental strand, 14727236 - 14727171
Alignment:
Q  135 gtaaatgatgacagatcatcttatgttattcttagtaagttttttagtcaattttagtaggtttta 200  Q
    |||| ||||||||| |||||||| |||||| |||  | |||||| ||||| |||||||||||||||    
T  14727236 gtaagtgatgacaggtcatcttacgttattattaccatgtttttcagtcatttttagtaggtttta 14727171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 200
Target Start/End: Complemental strand, 4340761 - 4340701
Alignment:
Q  140 tgatgacagatcatcttatgttattcttagtaagttttttagtcaattttagtaggtttta 200  Q
    |||||||||||||||||| |||||| |||||| |||||| ||  | ||| |||||||||||    
T  4340761 tgatgacagatcatcttacgttatttttagtatgtttttcagatattttcagtaggtttta 4340701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 199
Target Start/End: Original strand, 13216304 - 13216364
Alignment:
Q  140 tgatgacagatcatcttatgttattcttagtaagtttttt-agtcaattttagtaggtttt 199  Q
    ||||| |||||||||||| ||||||||||| | ||||||| ||||| ||||| ||||||||    
T  13216304 tgatggcagatcatcttacgttattcttagcatgttttttcagtcatttttaataggtttt 13216364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 200
Target Start/End: Complemental strand, 19246373 - 19246313
Alignment:
Q  140 tgatgacagatcatcttatgttattcttagtaagttttttagtcaattttagtaggtttta 200  Q
    ||||||||| |||||| | |||||||| || | |||||| |||| ||||||||||||||||    
T  19246373 tgatgacaggtcatctaacgttattctaagcatgtttttcagtctattttagtaggtttta 19246313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 188
Target Start/End: Original strand, 34451131 - 34451179
Alignment:
Q  140 tgatgacagatcatcttatgttattcttagtaagttttttagtcaattt 188  Q
    |||||||||||||| |||||||||| | | || ||||||||||||||||    
T  34451131 tgatgacagatcattttatgttattttcaatatgttttttagtcaattt 34451179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 201
Target Start/End: Complemental strand, 18535867 - 18535806
Alignment:
Q  140 tgatgacagatcatcttatgttattcttagtaagttttttagtcaattttagtaggttttac 201  Q
    ||||||||  |||||||| ||||||||||| | |||||| ||||||||||||||||||||||    
T  18535867 tgatgacaagtcatcttacgttattcttagcatgtttttcagtcaattttagtaggttttac 18535806  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 211
Target Start/End: Original strand, 819846 - 819917
Alignment:
Q  140 tgatgacagatcatcttatgttattcttagtaagttttttagtcaattttagtaggttttacatccataata 211  Q
    |||||| || |||||||| ||||||||||| | |||||| ||||||||| |||||||||||||  |||||||    
T  819846 tgatgataggtcatcttacgttattcttagcatgtttttcagtcaatttcagtaggttttacaagcataata 819917  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 195
Target Start/End: Original strand, 19573576 - 19573631
Alignment:
Q  140 tgatgacagatcatcttatgttattcttagtaagttttttagtcaattttagtagg 195  Q
    ||||||||| ||||||||||||||| |||| | |||||||||| ||||||||||||    
T  19573576 tgatgacaggtcatcttatgttatttttagcatgttttttagttaattttagtagg 19573631  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 211
Target Start/End: Complemental strand, 7805839 - 7805768
Alignment:
Q  140 tgatgacagatcatcttatgttattcttagtaagttttttagtcaattttagtaggttttacatccataata 211  Q
    ||||||||| |||||||| ||||||||||| | |||||| | ||| ||| |||| |||||||||||| ||||    
T  7805839 tgatgacaggtcatcttacgttattcttagcatgtttttcaatcattttcagtatgttttacatccaaaata 7805768  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 200
Target Start/End: Complemental strand, 12517389 - 12517327
Alignment:
Q  138 aatgatgacagatcatcttatgttattcttagtaagttttttagtcaattttagtaggtttta 200  Q
    ||||||||||| |||||||| ||||||||||| |  ||||| ||||| ||| |||||||||||    
T  12517389 aatgatgacaggtcatcttacgttattcttagcatctttttcagtcattttcagtaggtttta 12517327  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 200
Target Start/End: Original strand, 25850946 - 25851008
Alignment:
Q  138 aatgatgacagatcatcttatgttattcttagtaagttttttagtcaattttagtaggtttta 200  Q
    ||||| ||||| |||||||||||||||||||| | |||||| ||| | |||||||||| ||||    
T  25850946 aatgaagacaggtcatcttatgttattcttagcatgtttttcagttatttttagtaggattta 25851008  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 200
Target Start/End: Complemental strand, 19912677 - 19912617
Alignment:
Q  140 tgatgacagatcatcttatgttattcttagtaagttttttagtcaattttagtaggtttta 200  Q
    ||||||||| |||||||| ||||||||||| |  ||||| ||||| ||| |||||||||||    
T  19912677 tgatgacaggtcatcttacgttattcttagcatatttttcagtcattttcagtaggtttta 19912617  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 136 - 200
Target Start/End: Complemental strand, 4450772 - 4450708
Alignment:
Q  136 taaatgatgacagatcatcttatgttattcttagtaagttttttagtcaattttagtaggtttta 200  Q
    |||||||||||||||||||||| ||||||||||| | |||||  ||||| ||| |||||||||||    
T  4450772 taaatgatgacagatcatcttacgttattcttagcatgttttccagtcattttcagtaggtttta 4450708  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 143 - 201
Target Start/End: Complemental strand, 14195842 - 14195784
Alignment:
Q  143 tgacagatcatcttatgttattcttagtaagttttttagtcaattttagtaggttttac 201  Q
    |||||| | |||||||||||||||||| | |||||| ||||| ||||||||||||||||    
T  14195842 tgacaggtgatcttatgttattcttagcatgtttttcagtcatttttagtaggttttac 14195784  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 201
Target Start/End: Complemental strand, 3736436 - 3736372
Alignment:
Q  137 aaatgatgacagatcatcttatgttattcttagtaagttttttagtcaattttagtaggttttac 201  Q
    ||||||| | || |||||||| ||||||||||| | ||||||||||| |||| ||||||||||||    
T  3736436 aaatgattataggtcatcttacgttattcttagcatgttttttagtctatttcagtaggttttac 3736372  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 200
Target Start/End: Original strand, 18986744 - 18986804
Alignment:
Q  140 tgatgacagatcatcttatgttattcttagtaagttttttagtcaattttagtaggtttta 200  Q
    |||||||| ||||||||| ||||||||||| | |||||| ||||||||| ||||| |||||    
T  18986744 tgatgacatatcatcttacgttattcttagcatgtttttcagtcaatttcagtagatttta 18986804  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 200
Target Start/End: Original strand, 19001372 - 19001432
Alignment:
Q  140 tgatgacagatcatcttatgttattcttagtaagttttttagtcaattttagtaggtttta 200  Q
    |||||||| ||||||||| ||||||||||| | |||||| ||||||||| ||||| |||||    
T  19001372 tgatgacatatcatcttacgttattcttagcatgtttttcagtcaatttcagtagatttta 19001432  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 201
Target Start/End: Complemental strand, 6018445 - 6018394
Alignment:
Q  150 tcatcttatgttattcttagtaagttttttagtcaattttagtaggttttac 201  Q
    ||||||||||||||| |||| | |||||| |||| |||||||||||||||||    
T  6018445 tcatcttatgttatttttagcatgtttttcagtcgattttagtaggttttac 6018394  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 195
Target Start/End: Complemental strand, 9978382 - 9978327
Alignment:
Q  140 tgatgacagatcatcttatgttattcttagtaagttttttagtcaattttagtagg 195  Q
    |||||||||||||||||||||||||||||| |  ||||| |||  |||||||||||    
T  9978382 tgatgacagatcatcttatgttattcttagaatatttttcagtttattttagtagg 9978327  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 200
Target Start/End: Complemental strand, 2927971 - 2927911
Alignment:
Q  140 tgatgacagatcatcttatgttattcttagtaagttttttagtcaattttagtaggtttta 200  Q
    ||||||||| |||||||| ||||||||||| | |||||| |||  ||||||||||| ||||    
T  2927971 tgatgacaggtcatcttacgttattcttagcatgtttttcagtttattttagtaggattta 2927911  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 200
Target Start/End: Complemental strand, 11804795 - 11804735
Alignment:
Q  140 tgatgacagatcatcttatgttattcttagtaagttttttagtcaattttagtaggtttta 200  Q
    |||||||||||||||||| ||||||| ||  | |||||| ||||| ||| |||||||||||    
T  11804795 tgatgacagatcatcttacgttattcataacatgtttttcagtcattttcagtaggtttta 11804735  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 200
Target Start/End: Original strand, 19201322 - 19201382
Alignment:
Q  140 tgatgacagatcatcttatgttattcttagtaagttttttagtcaattttagtaggtttta 200  Q
    |||||||||||||||||| ||||||||||| | |||||| ||| | ||||| |||| ||||    
T  19201322 tgatgacagatcatcttacgttattcttagcatgtttttcagtaatttttattaggcttta 19201382  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 200
Target Start/End: Original strand, 26249075 - 26249135
Alignment:
Q  140 tgatgacagatcatcttatgttattcttagtaagttttttagtcaattttagtaggtttta 200  Q
    ||||||||| |||||||| ||||||| ||| | |||||| ||||| ||| |||||||||||    
T  26249075 tgatgacaggtcatcttacgttattcatagcatgtttttcagtcattttcagtaggtttta 26249135  T

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Target: scaffold0386 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 201
Target Start/End: Original strand, 4882 - 4933
Alignment:
Q  150 tcatcttatgttattcttagtaagttttttagtcaattttagtaggttttac 201  Q
    |||||||| ||||||||||| | |||||| ||||||||||||||||||||||    
T  4882 tcatcttacgttattcttagcatgtttttcagtcaattttagtaggttttac 4933  T

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Target: scaffold0019 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 211
Target Start/End: Complemental strand, 24889 - 24828
Alignment:
Q  150 tcatcttatgttattcttagtaagttttttagtcaattttagtaggttttacatccataata 211  Q
    |||||||||||||||||||| | |||||| ||||| ||| | ||||||||||||||| ||||    
T  24889 tcatcttatgttattcttagcatgtttttcagtcattttgaataggttttacatccagaata 24828  T

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Target: scaffold0019; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 211
Target Start/End: Complemental strand, 35263 - 35204
Alignment:
Q  152 atcttatgttattcttagtaagttttttagtcaattttagtaggttttacatccataata 211  Q
    |||||||||||||||||| | |||||| ||||| ||| | ||||||||| ||||||||||    
T  35263 atcttatgttattcttagcatgtttttcagtcattttcaataggttttatatccataata 35204  T

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Target: scaffold0094 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 204
Target Start/End: Complemental strand, 12308 - 12263
Alignment:
Q  159 gttattcttagtaagttttttagtcaattttagtaggttttacatc 204  Q
    ||||||||||| | |||||| | |||||||||||||||||||||||    
T  12308 gttattcttagcatgtttttcaatcaattttagtaggttttacatc 12263  T

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Target: scaffold0024 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 201
Target Start/End: Complemental strand, 41435 - 41375
Alignment:
Q  140 tgatgacagatcatcttatgttattcttagtaagttttttagtcaattttagtaggttttac 201  Q
    ||||||||| |||||||| ||||||||||| | |||||| ||| | ||||||||||||||||    
T  41435 tgatgacagctcatctta-gttattcttagcatgtttttcagttatttttagtaggttttac 41375  T

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Target: scaffold0111 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 200
Target Start/End: Complemental strand, 21537 - 21477
Alignment:
Q  140 tgatgacagatcatcttatgttattcttagtaagttttttagtcaattttagtaggtttta 200  Q
    |||||||||||||||||| | ||||||||  | |||||| ||| ||||| |||||||||||    
T  21537 tgatgacagatcatcttacgatattcttacgatgtttttcagttaatttcagtaggtttta 21477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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