View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3376_high_109 (Length: 215)
Name: NF3376_high_109
Description: NF3376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3376_high_109 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 171; Significance: 5e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 17 - 215
Target Start/End: Original strand, 3744637 - 3744835
Alignment:
| Q |
17 |
cttagaaaacaacctggtactcttctgcccccaaagaccatcacacatacactacatcattattcaaaacaaaaattcaagcaatctgaacttgaatggt |
116 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
3744637 |
cttaaaaaacaacctagtactcttctgcccccaaagaccatcacacatacactacatcattattcaaaacaaaaattcaagcaacctgaacctgaatggt |
3744736 |
T |
|
| Q |
117 |
tctgggcttcttaggctgaggaggaggcaatttctgaacagtaacactcagaaccccatcttgagaaacagcagaaacagcatcagtattagcattctc |
215 |
Q |
| |
|
||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
3744737 |
tctaggtttcttaggctgaggaggaggcaatttctgaacagtaacactcagaaccccatcttgacaaacagcagaaacagcatcagtattagcattctc |
3744835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 136
Target Start/End: Complemental strand, 4084497 - 4084453
Alignment:
| Q |
92 |
ttcaagcaatctgaacttgaatggttctgggcttcttaggctgag |
136 |
Q |
| |
|
|||||||||||||||| ||||| |||||||| ||||||||||||| |
|
|
| T |
4084497 |
ttcaagcaatctgaacctgaatagttctgggtttcttaggctgag |
4084453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 93 - 195
Target Start/End: Original strand, 48302914 - 48303016
Alignment:
| Q |
93 |
tcaagcaatctgaacttgaatggttctgggcttcttaggctgaggaggaggcaatttctgaacagtaacactcagaaccccatcttgagaaacagcagaa |
192 |
Q |
| |
|
|||||||| || ||| ||||| ||| | ||||||||||| | |||||||||||| || | |||||||||| | ||||| ||||||||| ||||||||||| |
|
|
| T |
48302914 |
tcaagcaaccttaacctgaatagttttaggcttcttaggttcaggaggaggcaacttattaacagtaacagtaagaacaccatcttgacaaacagcagaa |
48303013 |
T |
|
| Q |
193 |
aca |
195 |
Q |
| |
|
||| |
|
|
| T |
48303014 |
aca |
48303016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 132 - 215
Target Start/End: Complemental strand, 10462434 - 10462348
Alignment:
| Q |
132 |
ctgaggaggaggcaatttct---gaacagtaacactcagaaccccatcttgagaaacagcagaaacagcatcagtattagcattctc |
215 |
Q |
| |
|
|||||||||||||||||||| || |||||||| | || ||||||||| || | ||||| ||||||||||||| |||||||||||| |
|
|
| T |
10462434 |
ctgaggaggaggcaatttcttgagagcagtaacagtaagcaccccatctcgacacacagccgaaacagcatcagcattagcattctc |
10462348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University