View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3376_high_110 (Length: 214)
Name: NF3376_high_110
Description: NF3376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3376_high_110 |
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| [»] scaffold0478 (1 HSPs) |
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Alignment Details
Target: scaffold0478 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: scaffold0478
Description:
Target: scaffold0478; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 22 - 198
Target Start/End: Original strand, 5813 - 5989
Alignment:
| Q |
22 |
tgtgttaaaatgagtaagtggcagtgtactagtcttactgcagggctcattggatatcagagttttatcaacggtcatagtgtgttttgtattcaaaatt |
121 |
Q |
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|||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
5813 |
tgtgttgaaatgagtaagtggcagtgtactagtcttattgcagggctcattggatatcagagttttatcaactgtcatagtgtgttttgtattcaaaatt |
5912 |
T |
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| Q |
122 |
gcagattcaatcgaaacattttccacaacatcagagacttttgattgtgaaaccggattcaaacacaccatctcctt |
198 |
Q |
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| T |
5913 |
gcagattcaatcgaaacattttccacaacatcagagacttttgattgtgaaaccggattcaaacacaccatctcctt |
5989 |
T |
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Target: chr1 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 22 - 198
Target Start/End: Complemental strand, 8033698 - 8033522
Alignment:
| Q |
22 |
tgtgttaaaatgagtaagtggcagtgtactagtcttactgcagggctcattggatatcagagttttatcaacggtcatagtgtgttttgtattcaaaatt |
121 |
Q |
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|||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
8033698 |
tgtgttgaaatgagtaagtggcagtgtaccagtcttactgcagggctcattggatatcagagttttaccaacggtcatagtgtgttttgtattcaaaatt |
8033599 |
T |
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| Q |
122 |
gcagattcaatcgaaacattttccacaacatcagagacttttgattgtgaaaccggattcaaacacaccatctcctt |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |
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| T |
8033598 |
gcagattcaatcgaaacattttccacaacatcagagacttttgattgtgaaaccggatacaaacacgccatctcctt |
8033522 |
T |
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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 92
Target Start/End: Original strand, 21583883 - 21583957
Alignment:
| Q |
18 |
tttttgtgttaaaatgagtaagtggcagtgtactagtcttactgcagggctcattggatatcagagttttatcaa |
92 |
Q |
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|||||||||| | ||| ||| || ||||| ||| || ||||||||||||| ||||||||||| |||| ||||||| |
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| T |
21583883 |
tttttgtgttgacatgggtaggtagcagtttaccagccttactgcagggcgcattggatatcggagtgttatcaa |
21583957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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