View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3376_high_112 (Length: 206)
Name: NF3376_high_112
Description: NF3376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3376_high_112 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 4033726 - 4033931
Alignment:
| Q |
1 |
ccctctaactctccaacaaaagctattctaaagcaaattaagaaattaagccacaatctatggtctatttaaatacgttaatgcaagtagaccacgtttt |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4033726 |
ccctcttactctccaacaaaagctattctaaagcaaattaagaaattaagccacaatctatggtctatttaaatacgttaatgcaagtagaccacgtttt |
4033825 |
T |
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| Q |
101 |
gcaccaacaaaaagcttctctaattgctcattagatatggacagtaggggacacacctgcaaatatggtacatgtttatacattttttaaagcaagatga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4033826 |
gcaccaacaaaaagcttctctaattgctcattagatatggacagtaggggacacacctgcaaatatggtacatgtttatacattttttaaagcaagatga |
4033925 |
T |
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| Q |
201 |
tggccc |
206 |
Q |
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|||||| |
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| T |
4033926 |
tggccc |
4033931 |
T |
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