View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3376_high_17 (Length: 489)
Name: NF3376_high_17
Description: NF3376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3376_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 177; Significance: 3e-95; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 103 - 287
Target Start/End: Original strand, 1762352 - 1762536
Alignment:
| Q |
103 |
gcaacagcatgagctatttcattggttcgcctcctaacaaattatatctttgagtttatgaaatgagagttaacaatgtcttgacaagtactaggaacac |
202 |
Q |
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| T |
1762352 |
gcaagagcatgagctattccattggttcgcctcctaacaaattatatctttgagtttatgaaatgagagttaacaatgtcttgacaagtactaggaacac |
1762451 |
T |
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| Q |
203 |
atccaaattcagtcatgtctattttgttactaagcaataaatctacaattctcttagaatctaactctgaatcaacatgttccaa |
287 |
Q |
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| T |
1762452 |
atccaaattcagtcatgtctattttgttactaagcaataaatctacaattctcttagaatctaactctgaatcaacatgttccaa |
1762536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 289 - 474
Target Start/End: Original strand, 1762711 - 1762880
Alignment:
| Q |
289 |
ttgttcttacgttgtttccacaagctccaaagttgacagttgagcaaggtagtgtcctagaatctcaaaaataatagcagctgcgttagcattattacat |
388 |
Q |
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| T |
1762711 |
ttgttcttacgttgtttccacaagctccaaagttgacagttgagcaaggtagtgtcctagaatctcaaaaataatagcagctgcgttagcattattacat |
1762810 |
T |
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| Q |
389 |
gctacatctacatccattaacagatgatatgattgttgtctccacaaataattgctaccggcataaataaaaaatagatgataaat |
474 |
Q |
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| T |
1762811 |
gctacat----------------atgatatgattgttgtctccacaaataattgctaccggcataaataaaaaatagatgataaat |
1762880 |
T |
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