View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3376_high_19 (Length: 476)
Name: NF3376_high_19
Description: NF3376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3376_high_19 |
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| [»] scaffold0606 (1 HSPs) |
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Alignment Details
Target: scaffold0606 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: scaffold0606
Description:
Target: scaffold0606; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 462
Target Start/End: Original strand, 3752 - 4214
Alignment:
| Q |
1 |
atatcaaaactcaaacttaagtttctaaattaaaagtgaacttaatgttagattacattcaaaattaaattctataaatattcaagtttaatctcaagct |
100 |
Q |
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| T |
3752 |
atatcaaaactcaaacttaagtttctaaattaaaagtgaacttaacgttagattacattcaaaattaaattctataaatattcaaatttaatctcaaatt |
3851 |
T |
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| Q |
101 |
taaagaatatataatggattttacttatctcttaac-aaaatttcaaattattagagtaatttttccaatgagtgaatttccattcgacttttaaataaa |
199 |
Q |
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| T |
3852 |
taaagaatatataatggattttacttatctcttaacgaaaatttcaaattataaaagtaacttttccaatgagtgaatttccatatgacttttaaataaa |
3951 |
T |
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| Q |
200 |
attgcaccatcaagatcatcagaactaccatattttagataagtcattatgcatatgttaatagttgaatcaaaatcaaattttatgatattgtgatcct |
299 |
Q |
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| T |
3952 |
attgcaccatcaagatcgtcaggactaccatattttagataagtcattatgcatatgttaataggtgaatcaaaatcaaattttatgatattgtgatcct |
4051 |
T |
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| Q |
300 |
taaagacatttcattgttctcatattgcatccataatttataaactaatatagactctgagatcatttacaaatcatcactttgacagaataccaaagcc |
399 |
Q |
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| T |
4052 |
taaagacatttcattgttctcatattgcatccataatttataaactaatatagactctgagatcatttacaaatcatcactttgacagaataccaaagcc |
4151 |
T |
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| Q |
400 |
tagtgttatactcggcatcattgctactagggtgtctactattgtactctctacaagtacaca |
462 |
Q |
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| T |
4152 |
tagtgttctactcagcatcatcgctactagggtgtttactattgtactctttacaagtacaca |
4214 |
T |
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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 245 - 289
Target Start/End: Complemental strand, 20649303 - 20649259
Alignment:
| Q |
245 |
attatgcatatgttaatagttgaatcaaaatcaaattttatgata |
289 |
Q |
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| T |
20649303 |
attatacatattttaatagttgaatcaaaatcaaattttatgata |
20649259 |
T |
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