View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3376_high_26 (Length: 450)
Name: NF3376_high_26
Description: NF3376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3376_high_26 |
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Alignment Details
Target: chr5 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 101 - 422
Target Start/End: Complemental strand, 39983258 - 39982937
Alignment:
| Q |
101 |
ttggacatatcaattttttggaaattaatatgttccaacaatttggccacttaaaaaatccaaaatttaaaattattccggtagattcttctattccatt |
200 |
Q |
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| T |
39983258 |
ttggacatatcaatttttgggaaattaatatgttccaacaatttggccacttaaaaaatccaaaatataaaattattccggtagattcttctattccatt |
39983159 |
T |
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| Q |
201 |
ctaggttataatgccggtagcaaagttgagtggttttctttttggagctagataataagtgattttcttctcaccccatgctttcaaaatttcaaaacta |
300 |
Q |
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| T |
39983158 |
ctaggttataatgccggtagcaaagttgagtagttttctttttggagctagataataagtgattttcttctcaccccatgctttcaaaatttcaaaacta |
39983059 |
T |
|
| Q |
301 |
ctcatgcttggattttgtaatctaaataaacggtatttgtttggattgtagtatctagacatatggaatttcttcattttgaaatcatattaaagtaggc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||||| |
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| T |
39983058 |
ctcatgcttggattttgtaatctaaataaacggtatttgtttggattgtagtatctagacgtatggaatttcttccttttgaaatcatattaaaataggc |
39982959 |
T |
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| Q |
401 |
attcagataacatgattcatat |
422 |
Q |
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|||||||||||||||||||||| |
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| T |
39982958 |
attcagataacatgattcatat |
39982937 |
T |
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