View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3376_high_27 (Length: 442)
Name: NF3376_high_27
Description: NF3376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3376_high_27 |
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Alignment Details
Target: chr4 (Bit Score: 397; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 18 - 438
Target Start/End: Original strand, 1840978 - 1841398
Alignment:
| Q |
18 |
acttgtttcactcgaattcgtgtcttgattgtaattattgtttccaaatgaataaggtttccggagaaccatcaccggcgtgacaccaacatttttgtct |
117 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1840978 |
acttgtttcactcgaattcgtgtcttcattgtaattattgtttccacatgaataaggtttccggagaaccatcaccggcgtgacaccaacatttttgtct |
1841077 |
T |
|
| Q |
118 |
tgtttctcgagctcatcaacacgttctttaagttgtttcacataatcaattgcttctcgaagtattgaagccttgtctgtctataaaaatggaatattaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1841078 |
tgtttctcgagctcatcaacacgttctttaagttgtttcacataatcaattgcttctcgaagtattgaagccttgtctgtctataaaaatggaatattaa |
1841177 |
T |
|
| Q |
218 |
aattttagaaaaatatgatcaaaatatgttatacgaataatggacccgatgaaactagtgacaaatttaccttgctcaagccgggaatagtggctgaaag |
317 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1841178 |
aattttagaaaaatatgatcaaaatatattatacgaataatggatccgatgaaactagtgacaaatttaccttgctcaagccgggaatagtggctgaaag |
1841277 |
T |
|
| Q |
318 |
tgcaatgaatttctcagacaactcctgtcttcgttttctctctgccattatatgatcaatacactgtgaactgcttctacctctcttcactctattttgt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
1841278 |
tgcaatgaatttctcagacaactcctgtcttcgttttctctctgccattatatgatcaatacactgtgaactgcttctacctctcttcactccattttgt |
1841377 |
T |
|
| Q |
418 |
tgatttattttcatctcactc |
438 |
Q |
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|||||||||||||| |||||| |
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| T |
1841378 |
tgatttattttcatttcactc |
1841398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 54 - 224
Target Start/End: Original strand, 1820750 - 1820920
Alignment:
| Q |
54 |
attgtttccaaatgaataaggtttccggagaaccatcaccggcgtgacaccaacatttttgtcttgtttctcgagctcatcaacacgttctttaagttgt |
153 |
Q |
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|||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |
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| T |
1820750 |
attgattccacatgaataaggttgtcggagaaccatcaccggcgtgacaccaacatttttgtcttgtttctcgagctcttcaacatgttctttaagttgt |
1820849 |
T |
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| Q |
154 |
ttcacataatcaattgcttctcgaagtattgaagccttgtctgtctataaaaatggaatattaaaatttta |
224 |
Q |
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|||||||||||||| ||||||||||||| |||||||||||| |||||||| | ||||| |||||||||| |
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| T |
1820850 |
ttcacataatcaatcgcttctcgaagtaatgaagccttgtccatctataaagaaggaatcgtaaaatttta |
1820920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 273 - 409
Target Start/End: Original strand, 1823912 - 1824048
Alignment:
| Q |
273 |
tagtgacaaatttaccttgctcaagccgggaatagtggctgaaagtgcaatgaatttctcagacaactcctgtcttcgttttctctctgccattatatga |
372 |
Q |
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|||| ||||||||||||||||||| || |||||||| || ||||||||||||||||| |||||||| || ||||| | |||||||||||||||||||||| |
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| T |
1823912 |
tagttacaaatttaccttgctcaatccaggaatagtagccgaaagtgcaatgaatttttcagacaattcttgtctcctttttctctctgccattatatga |
1824011 |
T |
|
| Q |
373 |
tcaatacactgtgaactgcttctacctctcttcactc |
409 |
Q |
| |
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|||||||| |||||||||||||||||| ||||||||| |
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|
| T |
1824012 |
tcaatacattgtgaactgcttctacctttcttcactc |
1824048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 223 - 259
Target Start/End: Original strand, 4701117 - 4701153
Alignment:
| Q |
223 |
tagaaaaatatgatcaaaatatgttatacgaataatg |
259 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||| |
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|
| T |
4701117 |
tagaaaaatatgatcaaaacatgttatatgaataatg |
4701153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 222 - 250
Target Start/End: Complemental strand, 53801064 - 53801036
Alignment:
| Q |
222 |
ttagaaaaatatgatcaaaatatgttata |
250 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
53801064 |
ttagaaaaatatgatcaaaatatgttata |
53801036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 223 - 259
Target Start/End: Complemental strand, 12514399 - 12514363
Alignment:
| Q |
223 |
tagaaaaatatgatcaaaatatgttatacgaataatg |
259 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||||| |
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| T |
12514399 |
tagaaaaatatgattaaaatatgttatatgaataatg |
12514363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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