View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3376_high_28 (Length: 432)
Name: NF3376_high_28
Description: NF3376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3376_high_28 |
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Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 11 - 422
Target Start/End: Complemental strand, 2655895 - 2655492
Alignment:
| Q |
11 |
aatgatgttacctctttgtctacattttctttgtcgttaaaaatcagatggcagattatgttctgttcatctattatgcaattagtcatttgatttcaag |
110 |
Q |
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| T |
2655895 |
aatgatgttacctgtttatctacattttctttgtcgttaataatcagatggcagattatgttctgttcatctattatacaattagtcatttgatttcaag |
2655796 |
T |
|
| Q |
111 |
actttgnnnnnnn-caattgctatttcctataatctaatattacgaatccataataaaagtcattgacatgttttcgtattattttccttcgcggctgat |
209 |
Q |
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|||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |
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| T |
2655795 |
actttgtttttcttcaattgctatttgctataatctaatattacgaatccataataaaagtcattgacatgttttcgtattattttccttcgctgctaat |
2655696 |
T |
|
| Q |
210 |
aataatttggttcatttgattgattagtctaaaccacaatt-agtcattttgattgatcactgattccaataaggcaactcttttaatttataatcacaa |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||| || | | | ||||||||||||||||||||||||||||||||||||||| |
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| T |
2655695 |
aataatttggttcatttgattgattagtctaaaccacaattcaggccat----------agtgattccaataaggcaactcttttaatttataatcacaa |
2655606 |
T |
|
| Q |
309 |
attgaaatctccaaatgcagttttacatagcaaaattatttctgcatcaatgtcattctgttttaacgaagcaaacttaattttatgaatgcttctcctt |
408 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
2655605 |
attgaaatctccaaatgcagttttacatagcaaaattgtttctgcatcaatgtcattctgtcttaacgaagcaaacttaattttatgaatgcttctcctt |
2655506 |
T |
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| Q |
409 |
cttttacgcctatg |
422 |
Q |
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|||||||||||||| |
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| T |
2655505 |
cttttacgcctatg |
2655492 |
T |
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