View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3376_high_3 (Length: 837)
Name: NF3376_high_3
Description: NF3376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3376_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 720; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 720; E-Value: 0
Query Start/End: Original strand, 9 - 820
Target Start/End: Complemental strand, 43395066 - 43394250
Alignment:
| Q |
9 |
agcataggggccaaaaaggtgaaagcagaatcaactctaattagggaatattgccggacaggaaatgcagaagggtaatttagcttgcattaaatctatg |
108 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43395066 |
agcattggggccaaaaaggtgaaagcagaatcaactctaattagggaatattgcaggacaggaaatgcagaagggtaatttagcttgcattaaatctatg |
43394967 |
T |
|
| Q |
109 |
ttattagtacactgtcatttcatcaaggaatattattcttcttttaatatatatttttctatgtatcttgaggattgatagaattgttggtgtttt-gtg |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |
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| T |
43394966 |
ttattagtacactgtcatttcatcaaggaatattattcttcttttaatatatatttttctatgtatcttgaggattaatagaattgttggtgtttttgtg |
43394867 |
T |
|
| Q |
208 |
tgaaaatgcagatgcaggaagagctttcaagaaatgaagaaagaatatgtagcattgagaaagagacttgaaacttattttcaattggctaggcaagctg |
307 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43394866 |
tgaaaatgcagatgcaggaagagctttcaacaaatgaagaaagaatatgtagcattgagaaagagacttgaaacttattttcaattggctaggcaagctg |
43394767 |
T |
|
| Q |
308 |
ggccaatggatagagcatgtcgccctaagtaaagaccttagaaaaatatatatat----gcatttaatgaaggcatgcaaaatgtaattggtgatttttg |
403 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
43394766 |
ggccaatggatagagcatgtcgccctaagtaaagaccttagaaaaatatatatatatatgcatttaatgaaggcatgcaaaatgtaattggtgatttttg |
43394667 |
T |
|
| Q |
404 |
taactacgaaggnnnnnnnnnnnntgttaagtattcaccactagaattggaaaggcaatatggcctgtttgagagcattgtgctgccaaatatatatcag |
503 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43394666 |
taactacgaaggaaaaaagaaaaatgttaagtattcaccactagaattggaaaggcaatatggcctgtttgagagcattgtgctgccaaatatatatcag |
43394567 |
T |
|
| Q |
504 |
gtctatcctatgttctttttaatcaaaaagggctataggaatcctgctatgaagcattatagtttgtactatcatcactataaaggaaataatgttacac |
603 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
43394566 |
gtctatcctatgttctttttaatcaaaaagggctataggaatcctgctatgaagcattatagtttgtactatcatcactataaaggaaattatgttacac |
43394467 |
T |
|
| Q |
604 |
cttgttacaagtaccattattgtgattctctcttattgccccagctataaaaacttgggtaatatattgtctgttgcggtctaatgtaggtgttgtttgt |
703 |
Q |
| |
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|||||||||| |||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43394466 |
cttgttacaaataccatcattgtgactctctcttattgtcccagctataaaaacttgggtaatatattgtctgttgcggtctaatgtaggtgttgtttgt |
43394367 |
T |
|
| Q |
704 |
ttccactatgttgtggtgttgcgataagtgttttgttgtgatttataatcatagcacaattgcgggttgatgtcgttgcagacactactacagcaataat |
803 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43394366 |
ttccactatgttgtggtgttgcgataagtgttttgttgtgatttataatcatagcacaattgcgggttgatgtcgttgcagacactactacagcaataat |
43394267 |
T |
|
| Q |
804 |
attgcagccgcatcatg |
820 |
Q |
| |
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||||||||||||||||| |
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|
| T |
43394266 |
attgcagccgcatcatg |
43394250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 120; E-Value: 6e-61
Query Start/End: Original strand, 213 - 407
Target Start/End: Complemental strand, 43406987 - 43406795
Alignment:
| Q |
213 |
atgcagatgcaggaagagctttcaagaaatgaagaaagaatatgtagcattgagaaagagacttgaaacttattttcaattggctaggcaagctgggcca |
312 |
Q |
| |
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||||||||| ||||||||||||||| ||||||||| ||| |||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |
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| T |
43406987 |
atgcagatgtaggaagagctttcaacaaatgaagagagagtatgcagcattgagaaagagacttgaaacttattttcagctggctaggcaagctggtcca |
43406888 |
T |
|
| Q |
313 |
atggatagagcatgtcgccctaagtaaagaccttagaaaaatatatatatgcatttaatgaaggcatgcaaaatgtaattggtgatttttgtaac |
407 |
Q |
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||||||||||||||||||||||||||| ||||| | | | ||||||||| ||||||||||| ||||||||||||||||||||| ||||||||| |
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| T |
43406887 |
ttggatagagcatgtcgccctaagtaaacacctt--atagagatatatatgaatttaatgaagccatgcaaaatgtaattggtgaattttgtaac |
43406795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 9 - 110
Target Start/End: Complemental strand, 43407284 - 43407183
Alignment:
| Q |
9 |
agcataggggccaaaaaggtgaaagcagaatcaactctaattagggaatattgccggacaggaaatgcagaagggtaatttagcttgcattaaatctatg |
108 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43407284 |
agcattggggccaaaaaggtgaaagcagaatcaactctaattagggaatattgcaggacaggaaatgcagaagggtaatttagcttgcattaaatctatg |
43407185 |
T |
|
| Q |
109 |
tt |
110 |
Q |
| |
|
|| |
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|
| T |
43407184 |
tt |
43407183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 432 - 474
Target Start/End: Complemental strand, 43406771 - 43406729
Alignment:
| Q |
432 |
aagtattcaccactagaattggaaaggcaatatggcctgtttg |
474 |
Q |
| |
|
||||||||||||||||||||||||||| || || ||||||||| |
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| T |
43406771 |
aagtattcaccactagaattggaaaggaaaaattgcctgtttg |
43406729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 735 - 812
Target Start/End: Complemental strand, 37160231 - 37160154
Alignment:
| Q |
735 |
tttgttgtgatttataatcatagcacaattgcgggttgatgtcgttgcagacactactacagcaataatattgcagcc |
812 |
Q |
| |
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||||||||||||||||||||||||||||||| ||| |||| |||||| || || | || |||||||||||||||| |
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| T |
37160231 |
tttgttgtgatttataatcatagcacaattgtgggctgatactgttgcaaactctgccgcaacaataatattgcagcc |
37160154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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