View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3376_high_30 (Length: 428)
Name: NF3376_high_30
Description: NF3376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3376_high_30 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 12 - 416
Target Start/End: Original strand, 43094319 - 43094708
Alignment:
| Q |
12 |
atgaaatgtacttgttaacaagtctcgtgttattgtgacatcaaattctgcaaattaacagacagtagtcaagagtgaaccatctaaaacaaaaacacat |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
43094319 |
atgaaatgtacttgttaacaagtctcgtgttattgtgacatcaaattcagcaaattaacagacagtattcaagagtgaaccatctaaaacaaaaacacat |
43094418 |
T |
|
| Q |
112 |
actttctgcccaattctgggcacacaagagtttctctaaacga----cttgcttagaagtacgtatccaaattttgtatatataaaggatatattacaaa |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |
|
|
| T |
43094419 |
actttctgcccaattctgggcacacaagagtttctctaaacgatcgacttgcttagaagtacgtatccaaattttgtatata----------------aa |
43094502 |
T |
|
| Q |
208 |
cccaagcaatgtgatacttgagatttttgaaatatcactcaaacaactcctcaacataaaaacggatgcttccaaccaggctctatctatcttacgttta |
307 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43094503 |
cccaagcaatgtgacacttgagatttttgaaatatcactcaaacaactc---aacattaaaacggatgcttccaaccaggctctatctatcttacgtttg |
43094599 |
T |
|
| Q |
308 |
atttaaaattatagtataccaatgcaaatcttgctggtagattgatggctcgttaatgtattacatatgtttttcctcaatttatcaactatatatcaag |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43094600 |
atttaaaattatagtataccaatgcaaatcttgttggtagattgatggctcgttaatgtattacatatgtttttcctcaatttatcaactatatatcaag |
43094699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University