View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3376_high_36 (Length: 380)
Name: NF3376_high_36
Description: NF3376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3376_high_36 |
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Alignment Details
Target: chr3 (Bit Score: 176; Significance: 1e-94; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 17 - 217
Target Start/End: Original strand, 39158587 - 39158785
Alignment:
| Q |
17 |
aaatacatcatactcattgaaactcatatttattttgaattttttcttaacaataatgataaccaaacacacaattttagtcaaaatacttactacatcc |
116 |
Q |
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| T |
39158587 |
aaatacatcatactcattgaaactcatatttattttgaattttttcttaacaataatgataaccaaacacacaattttagtcaaaatact---tacatcc |
39158683 |
T |
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| Q |
117 |
taatacatggggcggttctgtaattataattaaaaagcaagggtgtaattaaaatttcaactt-aaaaagaggggcattttcgacagaccttcttgctga |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |
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| T |
39158684 |
taatacatggggcggttctgtaattataattaaaaagcaagggtgtaattaaaatttcaacttaaaaaagaagggcattttcgacagaccttcttgctga |
39158783 |
T |
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