View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3376_high_38 (Length: 376)
Name: NF3376_high_38
Description: NF3376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3376_high_38 |
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Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 13 - 357
Target Start/End: Complemental strand, 2036736 - 2036395
Alignment:
| Q |
13 |
aatatcttgaactacattgcctgtttaaattaatttgtaactactgatttggtgatattgtccattacacagaagaaagaaggttctaagaagagaaaga |
112 |
Q |
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| T |
2036736 |
aatatcttgaactacattgcctgtttaaattaatttgtaactactgatttggtgatattgtccattacacagaagaaagaaggttctaagaagagaaaga |
2036637 |
T |
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| Q |
113 |
ccaatgtagcttcagaagatgatgtctccttgcaagttttcacaaccaaagaggatactaagaagacagagttagctaaagattcttcaacatcaacaat |
212 |
Q |
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| T |
2036636 |
ccaatgtagcttcagaagatgatgtctccttgcaagtttggacaatcaaagaggatgcaaagaa---agagttagctaaagattcttcaacatcaacaat |
2036540 |
T |
|
| Q |
213 |
gacaaagaaagagtccctgcaagtgcagccttctgtggaaaattccctgctttcaatgcaggacactctcaactctccaaatacaggtacttttcattta |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
2036539 |
gacaaagaaagagtccctgcaagtgcagccttctgtggaaaattccctgctttcaatgcaggacacactaaactctccaaatacaggtacttttcattta |
2036440 |
T |
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| Q |
313 |
ttggatataattggtatgcactatcggcgtaaagaagttttacac |
357 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
2036439 |
ttggatataattggtatgcactatcggcataaagaagttttacac |
2036395 |
T |
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