View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3376_high_47 (Length: 337)
Name: NF3376_high_47
Description: NF3376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3376_high_47 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 17 - 319
Target Start/End: Complemental strand, 10601844 - 10601538
Alignment:
| Q |
17 |
aaagaataggttcatgtctaagttatgtttatgaaacaaaaaataaattttcaaggtgtgcatcgcgtcattcattcga----atataaatttaaattct |
112 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||| ||||||||||||||||| |
|
|
| T |
10601844 |
aaagaatatgttcatgtctaagttatgtttatgaaacaaaaaataaactttcaaggtgtgcattgtgtcattcattcgagagaatataaatttaaattct |
10601745 |
T |
|
| Q |
113 |
tgttcgaataatcattgatcagactttacttaatcaaccgagtttcaaattattagaatctttaactaagtttgtaatttaatggcatgcaggttagaaa |
212 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10601744 |
tgttctaataatcattgatcagactgtacttaatcaaccgagtttcgaattatcaaaatctttaactaagtttgtaatttaatggcatgcaggttagaaa |
10601645 |
T |
|
| Q |
213 |
cagttaacttgnnnnnnnttcacagcatagcaaagatagttggaacagtagtaactgtatcaggagcaatggttatgacattgtacaaaggtcctgccta |
312 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10601644 |
cagttaacttgaaaaaaattcacagcatagcaaagatagttggaacagtagtaactgtatcaggagcaatggttatgacattgtacaaaggtcctgcctt |
10601545 |
T |
|
| Q |
313 |
tcagatc |
319 |
Q |
| |
|
||||||| |
|
|
| T |
10601544 |
tcagatc |
10601538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 231 - 315
Target Start/End: Complemental strand, 32602587 - 32602503
Alignment:
| Q |
231 |
ttcacagcatagcaaagatagttggaacagtagtaactgtatcaggagcaatggttatgacattgtacaaaggtcctgcctatca |
315 |
Q |
| |
|
|||||||| |||| || || ||||||| || ||||| || |||||||| ||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
32602587 |
ttcacagcgtagccaaagtaattggaacggttgtaaccgtttcaggagctatggttatgactttgtacaaaggccctgcctatca |
32602503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University