View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3376_high_49 (Length: 335)

Name: NF3376_high_49
Description: NF3376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3376_high_49
NF3376_high_49
[»] chr7 (3 HSPs)
chr7 (120-318)||(11822534-11822731)
chr7 (157-214)||(11817639-11817695)
chr7 (163-224)||(11832452-11832513)
[»] chr3 (1 HSPs)
chr3 (1-31)||(53046478-53046508)
[»] chr8 (1 HSPs)
chr8 (1-29)||(27104146-27104174)
[»] chr4 (1 HSPs)
chr4 (1-29)||(11056232-11056260)


Alignment Details
Target: chr7 (Bit Score: 127; Significance: 2e-65; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 120 - 318
Target Start/End: Original strand, 11822534 - 11822731
Alignment:
Q  120 gagtgttttatgggcattccttaataagacctaaaaataatatctatttttcaagcaaaacgtgttaattgaaaaacatctgttttaggaaagaacgaca 219  Q
    ||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||     
T  11822534 gagtgttttatggacattcgttaataagacctaaaattaatatctatttttcaagcaaaacgtgttaattgaaaaacatcttttttaggaaagaatgact 11822633  T
Q  220 ttattattatttttttaccatcgacannnnnnnnagaggtgaaagaatgacattattgattcaattccttttttaatcagaaaaaacaaagaaagattg 318  Q
    ||||| || ||||||||| |||||||         ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  11822634 ttatt-ttttttttttactatcgacattttttttggaggtgaaagaatgacattattgattcaattccttttttaaacagaaaaaacaaagaaagattg 11822731  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 157 - 214
Target Start/End: Original strand, 11817639 - 11817695
Alignment:
Q  157 taatatctatttttcaagcaaaacgtgttaattgaaaaacatctgttttaggaaagaa 214  Q
    |||||||||||||||| |||||||||||||||| ||||| ||| ||||||||||||||    
T  11817639 taatatctatttttcaggcaaaacgtgttaatt-aaaaaaatccgttttaggaaagaa 11817695  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 163 - 224
Target Start/End: Original strand, 11832452 - 11832513
Alignment:
Q  163 ctatttttcaagcaaaacgtgttaattgaaaaacatctgttttaggaaagaacgacattatt 224  Q
    |||||||| | |||||||||| |||||||||||||||| |||||||||| || || ||||||    
T  11832452 ctattttttaggcaaaacgtgataattgaaaaacatcttttttaggaaataatgatattatt 11832513  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 53046508 - 53046478
Alignment:
Q  1 ttttttagcaaatcaaacgcaccctaaattg 31  Q
    |||||||||||||||||||||||||||||||    
T  53046508 ttttttagcaaatcaaacgcaccctaaattg 53046478  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 27104146 - 27104174
Alignment:
Q  1 ttttttagcaaatcaaacgcaccctaaat 29  Q
    |||||||||||||||||||||||||||||    
T  27104146 ttttttagcaaatcaaacgcaccctaaat 27104174  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 11056232 - 11056260
Alignment:
Q  1 ttttttagcaaatcaaacgcaccctaaat 29  Q
    |||||||||||||||||||||||||||||    
T  11056232 ttttttagcaaatcaaacgcaccctaaat 11056260  T

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