View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3376_high_58 (Length: 301)
Name: NF3376_high_58
Description: NF3376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3376_high_58 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 16 - 284
Target Start/End: Complemental strand, 14743798 - 14743531
Alignment:
| Q |
16 |
atcgtaagcaagaggtttggcctgacgaaagcggaagtatccggcctgactatcgaggagaaggctcgcctgatcaaatcaaccttctccgaagcagaga |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14743798 |
atcgtaagcaagaggtttggcctgacgaaagcggaagtatctggcctgactatcgaggagaaggctcgcctgatcaaatcaaccttctccgaagcagaga |
14743699 |
T |
|
| Q |
116 |
taaaacgcctcctcgaagaagaggttaatcgtttcttcgctcccttcaaatccctcttacatctcttttttcctgctctcgctgaatgcgnnnnnnnngt |
215 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
14743698 |
taaaacgcctcctggaagaagaggttaatcgtttcttcgctcccttcaaatccctcttacatctcttttttcctgctctcgctgaatgcg-aaaaaaagt |
14743600 |
T |
|
| Q |
216 |
tggcaacatcgatgacaccgttgaattttacttcaatctcatcttcttctctgttggtggttcgtactt |
284 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14743599 |
tggcaacatcgatgacaccgttgaattttacttcaatctcatcttcttctctgttggtggttcgtactt |
14743531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 16 - 138
Target Start/End: Complemental strand, 14746723 - 14746601
Alignment:
| Q |
16 |
atcgtaagcaagaggtttggcctgacgaaagcggaagtatccggcctgactatcgaggagaaggctcgcctgatcaaatcaaccttctccgaagcagaga |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
14746723 |
atcgtaagcaagaggtttggcctgacgaaagcggaggtatccggcctgaccatcgaggagaaggcttgcctgatcaaatcaaccttctctgaagcagaga |
14746624 |
T |
|
| Q |
116 |
taaaacgcctcctcgaagaagag |
138 |
Q |
| |
|
| | |||||| ||||||||||| |
|
|
| T |
14746623 |
ttactcgcctcatcgaagaagag |
14746601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University