View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3376_high_62 (Length: 299)
Name: NF3376_high_62
Description: NF3376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3376_high_62 |
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Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 11 - 284
Target Start/End: Complemental strand, 44014017 - 44013744
Alignment:
| Q |
11 |
cagagaagagcgatgtctacagttatggagtggttttgctagagatactaagtgggagaagtgcagttgaagatggacaacacgttggagatggacaaca |
110 |
Q |
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| T |
44014017 |
cagagaagagcgacgtctacagttatggagtggttttgctagagatactaagtgggagaagtgcagttgaagatggacaacacgttggagatggacaaca |
44013918 |
T |
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| Q |
111 |
catagttgaatgggtgaaaaagaaaatggcaagctttgaaccagctgtgtcaatactagatacaaagcttcaaagtctaccagatcaagtggtgcaagag |
210 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44013917 |
catagttgaatgggtgaagaagaaaatggcaagctttgaaccagctgtgtcaatactagatacaaagcttcaaagtctaccagatcaagtggtgcaagag |
44013818 |
T |
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| Q |
211 |
atgcttcaaacacttggaatcgctatgttttgtgtaaattcttcgccagttgaacgaccaactatgaaggaagt |
284 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
44013817 |
atgcttcaaacacttggaatcgctatgttttgtgtaaattcttcgccagttgaaagaccaactatgaaggaagt |
44013744 |
T |
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