View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3376_high_68 (Length: 290)

Name: NF3376_high_68
Description: NF3376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3376_high_68
NF3376_high_68
[»] chr1 (5 HSPs)
chr1 (21-287)||(46451559-46451826)
chr1 (24-287)||(46344730-46344991)
chr1 (24-287)||(46462533-46462794)
chr1 (123-287)||(46471257-46471421)
chr1 (168-287)||(46466097-46466216)


Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 21 - 287
Target Start/End: Original strand, 46451559 - 46451826
Alignment:
Q  21 acttatactcgttcaccaaaggtgagcatactagtaaataaaattatctttgtttgttcttaattatgtgaaagaa-attaattttgcaaagtactaaat 119  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||| ||||||||    
T  46451559 acttatactcgttcaccaaaggtgagcatagtagtaaataaaattatctttattttttcttaattatgtgaaagaagattaattttgcaaattactaaat 46451658  T
Q  120 taagtcaaaatttatgagacctttttaataaataataatgatgaaaatatggcagatgagcacaaagttttcggatttgatggcttttggtgggccagca 219  Q
    |  |||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46451659 ttggtcaaaatttatgagacccttttaataaataatgatgatgataatatggcagatgagcacaaagttttcggatttgatggcttttggtgggccagca 46451758  T
Q  220 cctgaaagaatcaatggaaggttggctatgattggttttgtagcagcaatgggggtggaaatagcaaa 287  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46451759 cctgaaagaatcaatggaaggttggctatgattggttttgtagcagcaatgggggtggaaatagcaaa 46451826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 24 - 287
Target Start/End: Complemental strand, 46344991 - 46344730
Alignment:
Q  24 tatactcgttcaccaaaggtgagcatactagtaaata-aaattatctttgtttgttcttaattatgtgaaagaaattaattttgcaaagtactaaattaa 122  Q
    ||||||||| ||||||||||||||||| ||| ||| | |||| ||||||||||  ||| |||| |||| ||||  ||| || |||||||| |||| ||      
T  46344991 tatactcgtgcaccaaaggtgagcatagtagcaaaaataaatcatctttgttttctctgaattgtgtgcaaga--ttagttatgcaaagtgctaattttg 46344894  T
Q  123 gtcaaaatttatgagacctttttaataaataataatgatgaaaatatggcagatgagcacaaagttttcggatttgatggcttttggtgggccagcacct 222  Q
     | ||||||||| || || ||||| ||| |  |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46344893 tttaaaatttattaggcccttttattaattt-taataatgaaaatatggcagatgagcacaaagttttcggatttgatggcttttggtgggccagcacct 46344795  T
Q  223 gaaagaatcaatggaaggttggctatgattggttttgtagcagcaatgggggtggaaatagcaaa 287  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46344794 gaaagaatcaatggaaggttggctatgattggttttgtagcagcaatgggggtggaaatagcaaa 46344730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 24 - 287
Target Start/End: Original strand, 46462533 - 46462794
Alignment:
Q  24 tatactcgttcaccaaaggtgagcatactagtaaata-aaattatctttgtttgttcttaattatgtgaaagaaattaattttgcaaagtactaaattaa 122  Q
    ||||||||| ||||||||||||||||| ||| ||| | |||| ||||||||||  ||| |||| |||| ||||  ||| || |||||||| |||| ||      
T  46462533 tatactcgtgcaccaaaggtgagcatagtagcaaaaataaatcatctttgttttctctgaattgtgtgcaaga--ttagttatgcaaagtgctaattttg 46462630  T
Q  123 gtcaaaatttatgagacctttttaataaataataatgatgaaaatatggcagatgagcacaaagttttcggatttgatggcttttggtgggccagcacct 222  Q
     | ||||||||| || || ||||| ||| |  |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  46462631 tttaaaatttattaggcccttttattaattt-taataatgaaaatatggcagatgagcacaaaattttcggatttgatggcttttggtgggccagcacct 46462729  T
Q  223 gaaagaatcaatggaaggttggctatgattggttttgtagcagcaatgggggtggaaatagcaaa 287  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46462730 gaaagaatcaatggaaggttggctatgattggttttgtagcagcaatgggggtggaaatagcaaa 46462794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 123 - 287
Target Start/End: Original strand, 46471257 - 46471421
Alignment:
Q  123 gtcaaaatttatgagacctttttaataaataataatgatgaaaatatggcagatgagcacaaagttttcggatttgatggcttttggtgggccagcacct 222  Q
    ||||||||| |||||||||| | ||| | |||| ||||| | |  ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||    
T  46471257 gtcaaaattaatgagaccttctaaatgattaatgatgattatataatggcagataagcacaaagttttcggatttgatggcttttggtggggcagcacct 46471356  T
Q  223 gaaagaatcaatggaaggttggctatgattggttttgtagcagcaatgggggtggaaatagcaaa 287  Q
    ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||    
T  46471357 gaaagaatcaatggaaggttggctatgattggttttgtatctgcaatgggggtggaattagcaaa 46471421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 168 - 287
Target Start/End: Original strand, 46466097 - 46466216
Alignment:
Q  168 atggcagatgagcacaaagttttcggatttgatggcttttggtgggccagcacctgaaagaatcaatggaaggttggctatgattggttttgtagcagca 267  Q
    ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||    
T  46466097 atggcagataagcacaaagttttcggatttgatggcttttggtggggcagcacctgaaagaatcaatggaaggttggctatgattggttttgtatctgca 46466196  T
Q  268 atgggggtggaaatagcaaa 287  Q
    |||||||||||| |||||||    
T  46466197 atgggggtggaattagcaaa 46466216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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