View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3376_high_73 (Length: 274)
Name: NF3376_high_73
Description: NF3376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3376_high_73 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 2410796 - 2411057
Alignment:
| Q |
1 |
tttatcaggtttggtgaggtcgataaacttaggtgcttcgatcttctcgtagaaatcgtcgtcaatttctatttcctcttcttcaattataggcaagaat |
100 |
Q |
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| T |
2410796 |
tttatcaggtttggtgaggtcgacaaacttaggtgcttcgatcttctcgtagaaatcgtcgtcaatttctatttcctcttcttcaattataggcaagaat |
2410895 |
T |
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| Q |
101 |
cgattttctgacattattttgttaacaaaagaaaagtgttacagtaacacagtgttgtttttgttttggtgtttgtaacaacaagtttagattgttcgaa |
200 |
Q |
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| T |
2410896 |
cgattttctgacattattttgtt--------aagagcgttacagtaacacagtgttgtttttgttttggtg-ttgtaacaacaagtttagattgttcgaa |
2410986 |
T |
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| Q |
201 |
gaattttaaagccccgtgtaactagccgttacgattcagacaggctggtagtaagagaataaaagaaacggtat |
274 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
2410987 |
gaattttaaagtcccgtgtaactagccgttacgattcagacaggctg---gtaagagaataaaagaaacggtat |
2411057 |
T |
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