View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3376_high_76 (Length: 272)
Name: NF3376_high_76
Description: NF3376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3376_high_76 |
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Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 34358787 - 34359038
Alignment:
| Q |
1 |
tattgagaacatcgttgctagtttgggattcgacataaacagtggaagacgaaaagatcctggtggagctgaaacagtggctgatacggccagcacgcaa |
100 |
Q |
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| T |
34358787 |
tattgagaacatcgttgctagtttgggattcgacataaacagtggaagacgaaaagatcctggtggagctgaaacagtggctgatacggccagcacgcaa |
34358886 |
T |
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| Q |
101 |
agcacaagtcaaagacttgactaaggaggaagaagccgttgttgtttgttgagaattctcagatcacataacattgttaaaagaagataaggtacaagca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
34358887 |
agcacaagtcaaagacttgactaaggaggaagaagccattgttgtttgttgagaattctcagatcacataacattgttaaaagaagataaggtacacgca |
34358986 |
T |
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| Q |
201 |
cgaaatgcacaagatcatggttgattgtgtttgtttattttaatattactcc |
252 |
Q |
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| T |
34358987 |
cgaaatgcacaagatcatggttgattgtgtttgtttattttaatattactcc |
34359038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 34353162 - 34353410
Alignment:
| Q |
1 |
tattgagaacatcgttgctagtttgggattcgacataaacagtggaagacgaaaagatcctggtggagctgaaacagtggctgatacggccagcacgcaa |
100 |
Q |
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|||||||| |||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||| || |
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| T |
34353162 |
tattgagatcatcgttgctagtttgggattcgacagagacaatggaagacgaaaagatcctggtggagctgaaagagtggctgatacggcaggcacgaaa |
34353261 |
T |
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| Q |
101 |
agcacaagtcaaagacttgactaaggaggaagaagccgttgttgtttgttgagaattctcagatcacataacattgttaaaagaagataaggtacaagca |
200 |
Q |
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|||||||| ||||||||| ||||||||||||||| || |||| | |||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |
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| T |
34353262 |
agcacaagacaaagacttcactaaggaggaagaaaccattgtcgcttgttgagaattctcagatcacataacattattaaaagaagataaggtacacgca |
34353361 |
T |
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| Q |
201 |
cgaaatgcacaagatcatggttgattgtgtttgtttattttaatattac |
249 |
Q |
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||||| ||||||||| |||||||||||||||||||||||||||||||| |
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| T |
34353362 |
agaaatacacaagatcgtggttgattgtgtttgtttattttaatattac |
34353410 |
T |
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