View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3376_high_77 (Length: 272)
Name: NF3376_high_77
Description: NF3376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3376_high_77 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 29 - 265
Target Start/End: Complemental strand, 23092708 - 23092468
Alignment:
| Q |
29 |
agatttcattgtgcaagttggctgcattttggtaggagattagtctagtctagtcatggttgctgccttgggatatatattgtgcatgttgtgtaggtgt |
128 |
Q |
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| T |
23092708 |
agatttcattgtgcaagttggctgcattttggtaggagattagtctagtctagtcatggttgctgccttgggatatatattgtgcatgttgtgtaggtgt |
23092609 |
T |
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| Q |
129 |
ggctttattaccgtcattt----ataggtgtgttttgtatggttaggggtctggtgtagtctcattacgtcgtttgatgatttgttgtaggactactatt |
224 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23092608 |
ggctttattaccgtcatttctaggtaggtgtgttttgtatggttaggggtctggtgtagtctcattacgtcgtttgatgatttgttgtaggactactatt |
23092509 |
T |
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| Q |
225 |
tggtctttgtttttatttaagtgtgtaggggtcctttgtta |
265 |
Q |
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|||||||||||||||||||| |||||||||||||||||||| |
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| T |
23092508 |
tggtctttgtttttatttaaatgtgtaggggtcctttgtta |
23092468 |
T |
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