View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3376_high_78 (Length: 270)
Name: NF3376_high_78
Description: NF3376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3376_high_78 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 42262238 - 42262507
Alignment:
| Q |
1 |
caatgaggagttgtttaaaacccccataccctcaaacatggatggtaatttcaatgttgaattcgtggagagacacttggcgctgttaaatggcaccatt |
100 |
Q |
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| T |
42262238 |
caatgaggagttgtttaaaacccccataccctcaaacatggatggtaatttcaatgttgaattcgtggagagacacttggcgctgttaaatggcaccatt |
42262337 |
T |
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| Q |
101 |
actttgatatcaagttatcgaggggaggctacttttcgcttatcaattttgggtaaacttggtgtgagagaatcatggataaatctctttattgtggggc |
200 |
Q |
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| T |
42262338 |
actttgatatcaagttatcgagaggaggctacttttcgcttatcaattttgggtaaacttggtgtgagagaatcatggataaatctctttattgtggggc |
42262437 |
T |
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| Q |
201 |
catttcacgagcagtttggatcgtcctttccnnnnnnngtgtcgcccataggacttggtaagaagaataa |
270 |
Q |
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| T |
42262438 |
catttcacgagcagtttggatcgtcctttcctttttttgtgtcgcccataggacttggtaagaagaataa |
42262507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 201
Target Start/End: Original strand, 42783254 - 42783314
Alignment:
| Q |
141 |
tatcaattttgggtaaacttggtgtgagagaatcatggataaatctctttattgtggggcc |
201 |
Q |
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| T |
42783254 |
tatcaattttgggtgaactaagtgtaaaagaatcatggattaaactctttattgttgggcc |
42783314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 130 - 195
Target Start/End: Original strand, 42449809 - 42449874
Alignment:
| Q |
130 |
tacttttcgcttatcaattttgggtaaacttggtgtgagagaatcatggataaatctctttattgt |
195 |
Q |
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| T |
42449809 |
tacttttcgcatatcaattttgggtaaacttggtgcgagagaatcttggatcaatctctttattgt |
42449874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 179
Target Start/End: Complemental strand, 7488823 - 7488773
Alignment:
| Q |
129 |
ctacttttcgcttatcaattttgggtaaacttggtgtgagagaatcatgga |
179 |
Q |
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| T |
7488823 |
ctacttttcacatatcaattttgggtgaaattggtgtgaaagaatcatgga |
7488773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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