View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3376_high_79 (Length: 269)
Name: NF3376_high_79
Description: NF3376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3376_high_79 |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 19 - 258
Target Start/End: Complemental strand, 19022276 - 19022036
Alignment:
| Q |
19 |
agagttgatgtggagaacatatccttcctaaattttgcttgttaaacaaggtacaaattacgtttattacacgatcaagttctgccttgctctctttca- |
117 |
Q |
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| T |
19022276 |
agagttgatgtggagatcatatccttcctaaattttgcttgttaaacaaggtacaaattacgtttattacacgatcaagttctgccttgctctctttcat |
19022177 |
T |
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| Q |
118 |
cccccctgtttacatgatacttccttgtcaagtaatccttttatttcctctgcagccatcataacttcttctatattaatagtgttgtcctcctcaatat |
217 |
Q |
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| T |
19022176 |
cccccctattcacatgatacttccttgtcaagtaatccttttatttcctctgcagccatcataacttcttctatattaatagtgttgtcctcctcaatat |
19022077 |
T |
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| Q |
218 |
atgaccattcttaaataagttatacttcatgtgacgtctct |
258 |
Q |
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| T |
19022076 |
atgaccattcttaattaagttctacttcatgtgacgtctct |
19022036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 258
Target Start/End: Complemental strand, 18833098 - 18832874
Alignment:
| Q |
36 |
catatccttcctaaattttgcttgttaaacaaggtacaaattacgtttattacacgatcaagttctgccttgctctctttcaccccc--ctgtttacatg |
133 |
Q |
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| T |
18833098 |
catatcctccctaattttttcttgttgaacaaggcacatatttcctctattactcgatcaattcccgccttgttctctttcacccccttttgctcatatg |
18832999 |
T |
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| Q |
134 |
atacttccttgtcaagtaatccttttatttcctctgcagccatcataacttcttctatattaatagtgttgtcctcctcaatatatgaccattcttaaat |
233 |
Q |
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| T |
18832998 |
attgttccatattaagcaatccttctcttttctctgcaaccatcatcacttgttcattctcaattgttttggcctcttcaatatgtgaccattcttgagg |
18832899 |
T |
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| Q |
234 |
aagttatacttcatgtgacgtctct |
258 |
Q |
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| T |
18832898 |
aagttatactttgtgtggcgtctct |
18832874 |
T |
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