View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3376_high_86 (Length: 251)
Name: NF3376_high_86
Description: NF3376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3376_high_86 |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 17 - 236
Target Start/End: Complemental strand, 29726849 - 29726630
Alignment:
| Q |
17 |
agatgagggggttaccggcatcagcgggtcatgtagccggtataaagtcgttgagaaggatggtgatgttgtgttatagttggggaataaaggttctaac |
116 |
Q |
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| T |
29726849 |
agatgagggggttaccggcatcagcgggtcatgtagccggtataaagtcgttgagaaggatggtgatgttgtgttatagttggggaataaaggttctaac |
29726750 |
T |
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| Q |
117 |
tgtttttgcattctcaaccgataattggattcgacctaaggtcattttaatttcacttgttagtttagttcactttgattaacatgacattagttgttga |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
29726749 |
tgtttttgcattctcaaccgataattggattcgacctaaggtcattttaatttcacttgttagtttagttcactttgatgaacatgacattagttgttga |
29726650 |
T |
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| Q |
217 |
tagtggttatgcttggtttt |
236 |
Q |
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|||||||||||||||||||| |
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| T |
29726649 |
tagtggttatgcttggtttt |
29726630 |
T |
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