View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3376_high_92 (Length: 246)

Name: NF3376_high_92
Description: NF3376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3376_high_92
NF3376_high_92
[»] chr7 (16 HSPs)
chr7 (1-226)||(26203798-26204023)
chr7 (1-220)||(26223442-26223661)
chr7 (1-179)||(26250796-26250974)
chr7 (1-190)||(26242337-26242526)
chr7 (1-191)||(26297384-26297574)
chr7 (1-207)||(26191188-26191394)
chr7 (55-181)||(26301760-26301886)
chr7 (67-205)||(26259824-26259962)
chr7 (1-213)||(26179000-26179212)
chr7 (4-215)||(19103568-19103779)
chr7 (1-181)||(26155152-26155332)
chr7 (1-135)||(26087776-26087910)
chr7 (1-135)||(26111564-26111698)
chr7 (1-206)||(26128491-26128696)
chr7 (54-197)||(26207368-26207511)
chr7 (54-200)||(26226900-26227046)
[»] chr4 (1 HSPs)
chr4 (1-181)||(44903199-44903379)


Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 26204023 - 26203798
Alignment:
Q  1 tgtgtatcagaaactaaattatcatgaggtctatactttctaacaaaatagcttgcacaattggagaagtagcttgagctgtaaaagtaaatccttggaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  26204023 tgtgtatcagaaactaaattatcatgaggtctatactttctaacaaaatagctcgcacaattggagaagtagcttgagctgtaaaagtaaatccttggaa 26203924  T
Q  101 tgtttagttttgcagctgattcaactgtccaaggataagtcatatcagttattatacaatctggttgaagatcttgaaacagaatttcaatttgatcttg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26203923 tgtttagttttgcagctgattcaactgtccaaggataagtcatatcagttattatacaatctggttgaagatcttgaaacagaatttcaatttgatcttg 26203824  T
Q  201 aagcatcattattccttgagctattt 226  Q
    ||||||||||||||||||||||||||    
T  26203823 aagcatcattattccttgagctattt 26203798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 26223661 - 26223442
Alignment:
Q  1 tgtgtatcagaaactaaattatcatgaggtctatactttctaacaaaatagcttgcacaattggagaagtagcttgagctgtaaaagtaaatccttggaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26223661 tgtgtatcagaaactaaattatcatgaggtctatactttctaacaaaatagcttgcacaattggagaagtagcttgagctgtaaaagtaaatccttggaa 26223562  T
Q  101 tgtttagttttgcagctgattcaactgtccaaggataagtcatatcagttattatacaatctggttgaagatcttgaaacagaatttcaatttgatcttg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26223561 tgtttagttttgcagctgattcaactgtccaaggataagtcatatccgttattatacaatctggttgaagatcttgaaacagaatttcaatttgatcttg 26223462  T
Q  201 aagcatcattattccttgag 220  Q
    ||||||||||||||| ||||    
T  26223461 aagcatcattattccatgag 26223442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 26250974 - 26250796
Alignment:
Q  1 tgtgtatcagaaactaaattatcatgaggtctatactttctaacaaaatagcttgcacaattggagaagtagcttgagctgtaaaagtaaatccttggaa 100  Q
    |||||||||||||||||||||| ||| ||| |||| ||||||||||||||  ||||||| | ||||||||||||||||||| ||||||||||||||||||    
T  26250974 tgtgtatcagaaactaaattataatggggtttatattttctaacaaaataaattgcacattcggagaagtagcttgagctgcaaaagtaaatccttggaa 26250875  T
Q  101 tgtttagttttgcagctgattcaactgtccaaggataagtcatatcagttattatacaatctggttgaagatcttgaaa 179  Q
    |||||||||||||||||||||| || |||||||||||  ||||||| || | |||||||||||||||||| ||||||||    
T  26250874 tgtttagttttgcagctgattctacagtccaaggatacttcatatctgtcactatacaatctggttgaagttcttgaaa 26250796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 26242526 - 26242337
Alignment:
Q  1 tgtgtatcagaaactaaattatcatgaggtctatactttctaacaaaatagcttgcacaattggagaagtagcttgagctgtaaaagtaaatccttggaa 100  Q
    |||||||||||||||||||||| ||| ||| |||| ||||||||||||||  || |||| | ||||||||||||||||||| |||||| |||||||||||    
T  26242526 tgtgtatcagaaactaaattataatggggtttatattttctaacaaaataaattccacagtcggagaagtagcttgagctgcaaaagtgaatccttggaa 26242427  T
Q  101 tgtttagttttgcagctgattcaactgtccaaggataagtcatatcagttattatacaatctggttgaagatcttgaaacagaatttcaa 190  Q
    | |||||||||||||||||||| || |||||||||||  |||||||||| | ||||||||||||||||||||||| |||||||| |||||    
T  26242426 tatttagttttgcagctgattccacagtccaaggatacatcatatcagtgactatacaatctggttgaagatctttaaacagaacttcaa 26242337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 26297574 - 26297384
Alignment:
Q  1 tgtgtatcagaaactaaattatcatgaggtctatactttctaacaaaatagcttgcacaattggagaagtagcttgagctgtaaaagtaaatccttggaa 100  Q
    ||||| |||||||||||||||| ||| ||| |||| ||||||||||||||  ||||||||| |||||||||||||||||||||||||| |||||||||||    
T  26297574 tgtgtttcagaaactaaattataatggggtttatattttctaacaaaataaattgcacaataggagaagtagcttgagctgtaaaagtcaatccttggaa 26297475  T
Q  101 tgtttagttttgcagctgattcaactgtccaaggataagtcatatcagttattatacaatctggttgaagatcttgaaacagaatttcaat 191  Q
    |||||||||||||||||||||| || |||||||| ||  ||||||| || | |||||||||||||||||| |||| ||| |||| ||||||    
T  26297474 tgtttagttttgcagctgattccacagtccaagggtatttcatatctgtcactatacaatctggttgaagttctttaaatagaacttcaat 26297384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 26191394 - 26191188
Alignment:
Q  1 tgtgtatcagaaactaaattatcatgaggtctatactttctaacaaaatagcttgcacaattggagaagtagcttgagctgtaaaagtaaatccttggaa 100  Q
    ||||||||||||||||||||||||||||| ||||| ||  | | |||||     |||||  |||||||||| |||||||| ||||||| |||||||||||    
T  26191394 tgtgtatcagaaactaaattatcatgaggcctatatttcatgataaaatgaaaggcacagctggagaagtaacttgagctataaaagtgaatccttggaa 26191295  T
Q  101 tgtttagttttgcagctgattcaactgtccaaggataagtcatatcagttattatacaatctggttgaagatcttgaaacagaatttcaatttgatcttg 200  Q
    |||||||||||||||||| ||| ||||||||||||||  |||||||||| | ||||||||||||||||||||||| ||||||||  |||||  ||||| |    
T  26191294 tgtttagttttgcagctgcttccactgtccaaggatacatcatatcagtgactatacaatctggttgaagatctttaaacagaacctcaatcggatctcg 26191195  T
Q  201 aagcatc 207  Q
    |||||||    
T  26191194 aagcatc 26191188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 55 - 181
Target Start/End: Complemental strand, 26301886 - 26301760
Alignment:
Q  55 gcacaattggagaagtagcttgagctgtaaaagtaaatccttggaatgtttagttttgcagctgattcaactgtccaaggataagtcatatcagttatta 154  Q
    ||||| ||||||||||||||||||||||||||||| ||||| |||||||| ||||||| ||||||||||||||||||||||||   |||||| || | ||    
T  26301886 gcacagttggagaagtagcttgagctgtaaaagtacatcctcggaatgttcagttttgaagctgattcaactgtccaaggatacagcatatcggtgacta 26301787  T
Q  155 tacaatctggttgaagatcttgaaaca 181  Q
    |||||||||||||||| ||||||||||    
T  26301786 tacaatctggttgaagttcttgaaaca 26301760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 67 - 205
Target Start/End: Complemental strand, 26259962 - 26259824
Alignment:
Q  67 aagtagcttgagctgtaaaagtaaatccttggaatgtttagttttgcagctgattcaactgtccaaggataagtcatatcagttattatacaatctggtt 166  Q
    |||||||||||||||||| |||| ||||||||||     ||||| || |||||||||||||||||||||||   ||||||||  | ||| ||||| ||||    
T  26259962 aagtagcttgagctgtaatagtagatccttggaacaccgagtttcgctgctgattcaactgtccaaggatagaacatatcagagactatgcaatcaggtt 26259863  T
Q  167 gaagatcttgaaacagaatttcaatttgatcttgaagca 205  Q
    |||||||||||||||||||||||||||||||||||||||    
T  26259862 gaagatcttgaaacagaatttcaatttgatcttgaagca 26259824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 26179212 - 26179000
Alignment:
Q  1 tgtgtatcagaaactaaattatcatgaggtctatactttctaacaaaat-agcttgcacaattggagaagtagcttgagctgtaaaagtaaatccttgga 99  Q
    |||||||||||||||||||||||||  |||||||||||  | |  |||| |||   ||||||||||||||||||||||||||||| | | ||| ||||||    
T  26179212 tgtgtatcagaaactaaattatcatttggtctatacttcatgatcaaatgagcaa-cacaattggagaagtagcttgagctgtaataatgaattcttgga 26179114  T
Q  100 atgtttagttttgcagctgattcaactgtccaaggataagtcatatcagttattatacaatctggttgaagatcttgaaacagaatttcaatttgatctt 199  Q
    ||   |||||||||||||| ||| |||||||| ||||| | ||||||||| |  |||||||| ||||||||||||||||||| ||| |||||| |||  |    
T  26179113 atacctagttttgcagctgcttccactgtccacggatacgacatatcagtgacaatacaatcaggttgaagatcttgaaacaaaatctcaattggattct 26179014  T
Q  200 gaagcatcattatt 213  Q
    | ||||| ||||||    
T  26179013 ggagcataattatt 26179000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 4 - 215
Target Start/End: Original strand, 19103568 - 19103779
Alignment:
Q  4 gtatcagaaactaaattatcatgaggtctatactttctaacaaaatagcttgcacaattggagaagtagcttgagctgtaaaagtaaatccttggaatgt 103  Q
    ||||||||||||||||||| |||||||||||||||  | | ||||| |    |||| |||||||||||||||||||||||| ||| ||| ||||||||      
T  19103568 gtatcagaaactaaattattatgaggtctatacttcatgataaaatggaaaacacagttggagaagtagcttgagctgtaatagtgaattcttggaatac 19103667  T
Q  104 ttagttttgcagctgattcaactgtccaaggataagtcatatcagttattatacaatctggttgaagatcttgaaacagaatttcaatttgatcttgaag 203  Q
     |||||||||||||| ||| || ||||||| |||  ||  |||||| | ||||||||||||| ||||||| ||||||||| | || ||  ||||||| ||    
T  19103668 ctagttttgcagctgcttcgacggtccaagcatacatctgatcagtaactatacaatctggtcgaagatcgtgaaacagattctcgataggatcttggag 19103767  T
Q  204 catcattattcc 215  Q
    ||||| ||||||    
T  19103768 catcaatattcc 19103779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 26155332 - 26155152
Alignment:
Q  1 tgtgtatcagaaactaaattatcatgaggtctatactttctaacaaaat-agcttgcacaattggagaagtagcttgagctgtaaaagtaaatccttgga 99  Q
    ||||||||||||||||||||||||||||||||||||||  | |  |||| |||  |||||||||||||||||||||||||||||| | | ||| ||||||    
T  26155332 tgtgtatcagaaactaaattatcatgaggtctatacttcatgatcaaatgagca-gcacaattggagaagtagcttgagctgtaataatgaattcttgga 26155234  T
Q  100 atgtttagttttgcagctgattcaactgtccaaggataagtcatatcagttattatacaatctggttgaagatcttgaaaca 181  Q
    ||   |||| ||||||||| ||| || ||||||||| |  ||||||| || | ||||||||| |||||||| ||||||||||    
T  26155233 atacctagtcttgcagctgcttcgaccgtccaaggaaacatcatatctgtcactatacaatcaggttgaaggtcttgaaaca 26155152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 26087910 - 26087776
Alignment:
Q  1 tgtgtatcagaaactaaattatcatgaggtctatactttctaacaaaatagcttgcacaattggagaagtagcttgagctgtaaaagtaaatccttggaa 100  Q
    |||||||||||||| |||||||||||||||||||||||  | | |||||    |||||| |||||||||||||||||||||||| ||| ||| |||||||    
T  26087910 tgtgtatcagaaaccaaattatcatgaggtctatacttcatgataaaatgttctgcacagttggagaagtagcttgagctgtaatagtgaattcttggaa 26087811  T
Q  101 tgtttagttttgcagctgattcaactgtccaagga 135  Q
    |   |||||||||||||| ||| || |||||||||    
T  26087810 tacctagttttgcagctgcttcgaccgtccaagga 26087776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 26111698 - 26111564
Alignment:
Q  1 tgtgtatcagaaactaaattatcatgaggtctatactttctaacaaaatagcttgcacaattggagaagtagcttgagctgtaaaagtaaatccttggaa 100  Q
    |||||||||||||| |||||||||||||||||||||||  | | |||||    |||||| |||||||||||||||||||||||| ||| ||| |||||||    
T  26111698 tgtgtatcagaaaccaaattatcatgaggtctatacttcatgataaaatgttctgcacagttggagaagtagcttgagctgtaatagtgaattcttggaa 26111599  T
Q  101 tgtttagttttgcagctgattcaactgtccaagga 135  Q
    |   |||||||||||||| ||| || |||||||||    
T  26111598 tacctagttttgcagctgcttcgaccgtccaagga 26111564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 26128696 - 26128491
Alignment:
Q  1 tgtgtatcagaaactaaattatcatgaggtctatactttctaacaaaatagcttgcacaattggagaagtagcttgagctgtaaaagtaaatccttggaa 100  Q
    |||||||||||||||||||||||||  |||||||||||  | | |||||    |||||| |||||||||||||||||||||| | | | ||| |||||||    
T  26128696 tgtgtatcagaaactaaattatcatttggtctatacttcatgataaaatgttctgcacagttggagaagtagcttgagctgttataatgaattcttggaa 26128597  T
Q  101 tgtttagttttgcagctgattcaactgtccaaggataagtcatatcagttattatacaatctggttgaagatcttgaaacagaatttcaatttgatcttg 200  Q
    |   |||||||||||||| ||| || |||||||||    ||||||| || | ||||||||| |||||||| |||||||||| |   ||| || |||||||    
T  26128596 tacctagttttgcagctgcttcgaccgtccaaggaagcatcatatctgtcactatacaatcaggttgaaggtcttgaaacaaagcctcagttggatcttg 26128497  T
Q  201 aagcat 206  Q
    ||||||    
T  26128496 aagcat 26128491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 54 - 197
Target Start/End: Complemental strand, 26207511 - 26207368
Alignment:
Q  54 tgcacaattggagaagtagcttgagctgtaaaagtaaatccttggaatgtttagttttgcagctgattcaactgtccaaggataagtcatatcagttatt 153  Q
    ||||||| | ||||||||||||||||||||| |||||| ||||||||||   ||||||||||||||||| |||||||| |||||   |||||| |  | |    
T  26207511 tgcacaacttgagaagtagcttgagctgtaatagtaaagccttggaatgccgagttttgcagctgattccactgtccatggatataacatatctgagact 26207412  T
Q  154 atacaatctggttgaagatcttgaaacagaatttcaatttgatc 197  Q
    |||||||||||||| |||||  | |||| ||| |||||||||||    
T  26207411 atacaatctggttggagatcacggaacaaaatctcaatttgatc 26207368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 54 - 200
Target Start/End: Complemental strand, 26227046 - 26226900
Alignment:
Q  54 tgcacaattggagaagtagcttgagctgtaaaagtaaatccttggaatgtttagttttgcagctgattcaactgtccaaggataagtcatatcagttatt 153  Q
    ||||||| | ||||||||||||||||||||| |||||| ||| ||||||    |||||||||||||||  |||||||||||| |   |||||| |  | |    
T  26227046 tgcacaacttgagaagtagcttgagctgtaatagtaaagcctaggaatgccgcgttttgcagctgattgcactgtccaaggaaataacatatctgagact 26226947  T
Q  154 atacaatctggttgaagatcttgaaacagaatttcaatttgatcttg 200  Q
    ||||||||| |||| ||||| || |||| ||| ||||||||||||||    
T  26226946 atacaatcttgttggagatcatggaacaaaatctcaatttgatcttg 26226900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 44903379 - 44903199
Alignment:
Q  1 tgtgtatcagaaactaaattatcatgaggtctatactttctaacaaaatagcttgcacaattggagaagtagcttgagctgtaaaagtaaatccttggaa 100  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| | |||| ||| ||||    
T  44903379 tgtgtatcagaaactaaatgatcatgaggtctatactttctaacaaaataacatgcacaattggagaagtagcttgagctgtaataataaagcctaggaa 44903280  T
Q  101 tgtttagttttgcagctgattcaactgtccaaggataagtcatatcagttattatacaatctggttgaagatcttgaaaca 181  Q
    || ||||||||||||||||||| || |||||||||    |||||||||||| |||||||||||||||||||||||||||||    
T  44903279 tgcttagttttgcagctgattccacagtccaaggaatcatcatatcagttactatacaatctggttgaagatcttgaaaca 44903199  T

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