View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3376_high_94 (Length: 243)

Name: NF3376_high_94
Description: NF3376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3376_high_94
NF3376_high_94
[»] scaffold0627 (1 HSPs)
scaffold0627 (18-243)||(5044-5275)
[»] chr6 (1 HSPs)
chr6 (18-238)||(16716745-16716968)
[»] chr5 (10 HSPs)
chr5 (18-109)||(8547747-8547834)
chr5 (155-210)||(8547634-8547689)
chr5 (41-104)||(2874139-2874202)
chr5 (41-106)||(2904643-2904708)
chr5 (41-104)||(2856529-2856592)
chr5 (165-211)||(8536026-8536072)
chr5 (41-106)||(1599940-1600005)
chr5 (18-106)||(8529315-8529403)
chr5 (18-106)||(8535879-8535967)
chr5 (18-106)||(8641758-8641846)
[»] chr7 (2 HSPs)
chr7 (165-211)||(35780338-35780384)
chr7 (165-211)||(48361387-48361433)
[»] chr4 (1 HSPs)
chr4 (18-106)||(9443476-9443564)


Alignment Details
Target: scaffold0627 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 18 - 243
Target Start/End: Original strand, 5044 - 5275
Alignment:
Q  18 acaagtgggattcataagacatgaaaatgaaatttgaggatccacattgatatttctccatgttggtgttccgagtgtgtgtatctcaacaacgaacaca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||    
T  5044 acaagtgggattcataagacatgaaaatgaaatttgaggatccacattgatatttctccatgttgatgttccgagtgtgtgtatctcgacaaggaacaca 5143  T
Q  118 tgctcaacgtcc---gaggaattgacacgtataaca---cttctccaaatatgtatcactttatattcattagtcttaggatagaaaccaaaaccagctt 211  Q
    ||||| ||||||   |||||||||||||||||||||   |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  5144 tgctctacgtccgaggaggaattgacacgtataacacttcttctccaaatatgtatcactttatattcattagtcgtaggatagaaaccaaaaccagctt 5243  T
Q  212 cttgtcctattacacgaaccgtgtcatgtggc 243  Q
    ||||||||||||||||||||||||||||||||    
T  5244 cttgtcctattacacgaaccgtgtcatgtggc 5275  T

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Target: chr6 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 16716745 - 16716968
Alignment:
Q  18 acaagtgggattcataagacatgaaaatgaaatttgaggatccacattgatatttctccatgttggtgttccgagtgtgtgtatctcaacaacgaacaca 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  16716745 acaagtgggattcataagacatgaaaatgaaatttgaggatccacattgatatttctccatgttggtgttccgagtgtgtgtatctcaacaaggaacaca 16716844  T
Q  118 tgctcaacgtccgaggaattgacacgtataacactt---ctccaaatatgtatcactttatattcattagtcttaggatagaaaccaaaaccagcttctt 214  Q
    || |||| |||||||||||||||| |||||||||||   |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  16716845 tgttcaaagtccgaggaattgacatgtataacacttctcctccaaatatgtatcactttatattcattagttttaggatagaaaccaaaaccagcttctt 16716944  T
Q  215 gtcctattacacgaaccgtgtcat 238  Q
    ||||||||||| ||||| ||||||    
T  16716945 gtcctattacatgaaccctgtcat 16716968  T

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Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 18 - 109
Target Start/End: Complemental strand, 8547834 - 8547747
Alignment:
Q  18 acaagtgggattcataagacatgaaaatgaaatttgaggatccacattgatatttctccatgttggtgttccgagtgtgtgtatctcaacaa 109  Q
    ||||||||||| ||||||| | ||| | |||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||    
T  8547834 acaagtgggatacataagataagaagaagaaatttgaggatccac----ttatttctccatgttggtgttccgagtgtgtgtatctcaacaa 8547747  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 155 - 210
Target Start/End: Complemental strand, 8547689 - 8547634
Alignment:
Q  155 tccaaatatgtatcactttatattcattagtcttaggatagaaaccaaaaccagct 210  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||    
T  8547689 tccaaatatttatcactttatattcattagttttaggatagaaaccacaaccagct 8547634  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 104
Target Start/End: Complemental strand, 2874202 - 2874139
Alignment:
Q  41 aaaatgaaatttgaggatccacattgatatttctccatgttggtgttccgagtgtgtgtatctc 104  Q
    |||| ||||||||||||||||| |  | ||||||||||| |||||||||||| |||||||||||    
T  2874202 aaaaagaaatttgaggatccacttcaacatttctccatgatggtgttccgagcgtgtgtatctc 2874139  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 106
Target Start/End: Complemental strand, 2904708 - 2904643
Alignment:
Q  41 aaaatgaaatttgaggatccacattgatatttctccatgttggtgttccgagtgtgtgtatctcaa 106  Q
    |||| ||||||||||||||||| |  | ||||||||||| || ||||||||| |||||||||||||    
T  2904708 aaaaagaaatttgaggatccacttcaagatttctccatgatgttgttccgagcgtgtgtatctcaa 2904643  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 104
Target Start/End: Complemental strand, 2856592 - 2856529
Alignment:
Q  41 aaaatgaaatttgaggatccacattgatatttctccatgttggtgttccgagtgtgtgtatctc 104  Q
    |||| ||||||||||||||||| |  | ||||||||||| || ||||||||| |||||||||||    
T  2856592 aaaaagaaatttgaggatccacttcaacatttctccatgatgatgttccgagcgtgtgtatctc 2856529  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 211
Target Start/End: Original strand, 8536026 - 8536072
Alignment:
Q  165 tatcactttatattcattagtcttaggatagaaaccaaaaccagctt 211  Q
    |||||| |||||||||||||| ||||| | |||||||||||||||||    
T  8536026 tatcaccttatattcattagttttaggttggaaaccaaaaccagctt 8536072  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 106
Target Start/End: Complemental strand, 1600005 - 1599940
Alignment:
Q  41 aaaatgaaatttgaggatccacattgatatttctccatgttggtgttccgagtgtgtgtatctcaa 106  Q
    |||| ||||||||||||||||| |  | ||||||||| | ||||||||| ||||||| ||||||||    
T  1600005 aaaaagaaatttgaggatccacttcaacatttctccaggatggtgttccaagtgtgtttatctcaa 1599940  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 8529315 - 8529403
Alignment:
Q  18 acaagtgggattcataagacatgaaaatgaaatttgaggatccacattgatatttctccatgttggtgttccgagtgtgtgtatctcaa 106  Q
    ||||||||||| | | ||||  ||||| ||||||||||||||||| |  | ||||||||| | || |||||| ||||||| ||||||||    
T  8529315 acaagtgggatactttagactcgaaaaagaaatttgaggatccacttcaacatttctccaggatgttgttccaagtgtgtttatctcaa 8529403  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 8535879 - 8535967
Alignment:
Q  18 acaagtgggattcataagacatgaaaatgaaatttgaggatccacattgatatttctccatgttggtgttccgagtgtgtgtatctcaa 106  Q
    ||||||||||| | | ||||  ||||| ||||||||||||||||| |  | ||||||||| | ||| ||||| ||||||| ||||||||    
T  8535879 acaagtgggatactttagactcgaaaaagaaatttgaggatccacttcaacatttctccaggatggggttccaagtgtgtttatctcaa 8535967  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 8641758 - 8641846
Alignment:
Q  18 acaagtgggattcataagacatgaaaatgaaatttgaggatccacattgatatttctccatgttggtgttccgagtgtgtgtatctcaa 106  Q
    ||||||||||| | ||||||  ||||  ||||| ||||||||||| |  | ||||||||||| ||||| ||| ||||||| ||||||||    
T  8641758 acaagtgggatacttaagactcgaaatagaaatctgaggatccacttcaacatttctccatgatggtgctccaagtgtgtttatctcaa 8641846  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 211
Target Start/End: Original strand, 35780338 - 35780384
Alignment:
Q  165 tatcactttatattcattagtcttaggatagaaaccaaaaccagctt 211  Q
    |||||| |||||||||||||| ||||| | |||||||||||||||||    
T  35780338 tatcaccttatattcattagttttaggttggaaaccaaaaccagctt 35780384  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 211
Target Start/End: Complemental strand, 48361433 - 48361387
Alignment:
Q  165 tatcactttatattcattagtcttaggatagaaaccaaaaccagctt 211  Q
    |||||| |||||||||||||| ||||| | |||||||||||||||||    
T  48361433 tatcaccttatattcattagttttaggttggaaaccaaaaccagctt 48361387  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 9443476 - 9443564
Alignment:
Q  18 acaagtgggattcataagacatgaaaatgaaatttgaggatccacattgatatttctccatgttggtgttccgagtgtgtgtatctcaa 106  Q
    ||||||||||| | | ||||  ||||| ||||||||||||||||| |  | ||||||||| | || |||||| ||||||| ||||||||    
T  9443476 acaagtgggatactttagactcgaaaaagaaatttgaggatccacttcaacatttctccaggatgttgttccaagtgtgtttatctcaa 9443564  T

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