View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3376_low_1 (Length: 902)

Name: NF3376_low_1
Description: NF3376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3376_low_1
NF3376_low_1
[»] chr7 (3 HSPs)
chr7 (87-579)||(27776281-27776790)
chr7 (685-888)||(27776866-27777069)
chr7 (757-821)||(19741093-19741157)
[»] chr5 (2 HSPs)
chr5 (757-808)||(41218921-41218972)
chr5 (756-820)||(26472136-26472200)
[»] scaffold0164 (1 HSPs)
scaffold0164 (758-820)||(27146-27208)
[»] chr8 (1 HSPs)
chr8 (758-820)||(15193146-15193208)
[»] chr4 (3 HSPs)
chr4 (758-820)||(18254024-18254086)
chr4 (757-821)||(51764235-51764299)
chr4 (759-812)||(22643579-22643632)
[»] chr3 (2 HSPs)
chr3 (758-820)||(53978164-53978226)
chr3 (756-820)||(8836233-8836297)
[»] chr1 (1 HSPs)
chr1 (758-820)||(49641073-49641135)
[»] chr2 (2 HSPs)
chr2 (757-821)||(19481630-19481694)
chr2 (757-821)||(11337765-11337829)
[»] chr6 (1 HSPs)
chr6 (756-821)||(34309881-34309946)


Alignment Details
Target: chr7 (Bit Score: 385; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 87 - 579
Target Start/End: Original strand, 27776281 - 27776790
Alignment:
Q  87 tatattaaacaaggtgagttactgtaaaattatcattaagaggcaattaaagaaaatatagatagtgaaatnnnnnnn-tacttctgtgttgtgcgcctc 185  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||        ||||| |||||| || |||||    
T  27776281 tatattaaacaaggtgagttattgtaaaattatcattaagaggcaattaaagaaaataaagatagtgaaataaaaaaaatacttgtgtgttatgtgcctc 27776380  T
Q  186 tttaaacccattcccataaaccttcccaatggccaacaagacataactagtatttggggcaccatgcacctcacaaagactattactttatttgatgtta 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27776381 tttaaacccattcccataaaccttcccaatggccaacaagacataactagtatttggggcaccatgcacctcacaaagactattactttatttgatgtta 27776480  T
Q  286 tatatgttcctcatttttctttcaaccttatttcagttattaagcttactaatcagtcaccatgttttgtttccttttatgatgatcattgtcttgtaaa 385  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27776481 tatatgttcctcatttttctttcaaccttatttcagttattaagcttactaatcagtcaccatgttttgtttccttttatgatgatcattgtcttgtaaa 27776580  T
Q  386 ggaaatgaatac---gaagatgattggcaaagctagagcggctcatggattatatgaagttgattttcctcaatctaatccagttc-------------- 468  Q
    ||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                  
T  27776581 ggaaatgaataccttgaagatgattggcaaagctagagcggctcatggattatatgaagttgattttcctcaatctaatccagttccatttccttttaaa 27776680  T
Q  469 cattttgcaaataatacttgtacaaacattcctcattccaatatatggcgttacagattaagccatccatcccctattacactcttataagaatgacaat 568  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  27776681 cattttgcaaataatacttgtacaaacattcctcattccaatatacggcgttacagattaagccatccat-ccctattacactcttataagaatgacaat 27776779  T
Q  569 tcatatatttt 579  Q
    ||||| |||||    
T  27776780 tcatagatttt 27776790  T

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Target: chr7; HSP #2
Raw Score: 160; E-Value: 9e-85
Query Start/End: Original strand, 685 - 888
Target Start/End: Original strand, 27776866 - 27777069
Alignment:
Q  685 atctgatgacaattgtgaagaatttatgtttgagtcttttttacagaagtaagggtattttacattaactttcttgtgttgaaacaccccaacaaaatgg 784  Q
    ||||||||||||||| ||||||||||||||||||||| ||||||| ||| || |||||||| ||||||||||||||||||||||||||||||||||||||    
T  27776866 atctgatgacaattgagaagaatttatgtttgagtctattttacaaaagaaatggtattttgcattaactttcttgtgttgaaacaccccaacaaaatgg 27776965  T
Q  785 ggtggttgaaaggaagtatcaacatattctcaatgtgtcaaggaccttaatgtttcattatcatattcctatctctttttgtgcttatgctatttcacat 884  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||| |||||||||||||||||    
T  27776966 ggtggttgaaaggaagcatcaacatattctcaatgtgtcaaggaccttaatatttcaatatcagattcctatctctttttgttcttatgctatttcacat 27777065  T
Q  885 gatg 888  Q
    ||||    
T  27777066 gatg 27777069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 757 - 821
Target Start/End: Original strand, 19741093 - 19741157
Alignment:
Q  757 cttgtgttgaaacaccccaacaaaatggggtggttgaaaggaagtatcaacatattctcaatgtg 821  Q
    |||||||||| || || |||||||||||||| |||||||| ||| ||||||| ||||| ||||||    
T  19741093 cttgtgttgagacgcctcaacaaaatggggttgttgaaagaaagcatcaacacattcttaatgtg 19741157  T

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Target: chr5 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 757 - 808
Target Start/End: Complemental strand, 41218972 - 41218921
Alignment:
Q  757 cttgtgttgaaacaccccaacaaaatggggtggttgaaaggaagtatcaaca 808  Q
    ||||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  41218972 cttgtgttgaaaccccccaacaaaatggggtggttgaaaggaagcatcaaca 41218921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 756 - 820
Target Start/End: Original strand, 26472136 - 26472200
Alignment:
Q  756 tcttgtgttgaaacaccccaacaaaatggggtggttgaaaggaagtatcaacatattctcaatgt 820  Q
    |||||||||||||| ||||||||||||||    |||||||| ||| ||||||||||||| |||||    
T  26472136 tcttgtgttgaaactccccaacaaaatggtagagttgaaagaaagcatcaacatattcttaatgt 26472200  T

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Target: scaffold0164 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0164
Description:

Target: scaffold0164; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 758 - 820
Target Start/End: Complemental strand, 27208 - 27146
Alignment:
Q  758 ttgtgttgaaacaccccaacaaaatggggtggttgaaaggaagtatcaacatattctcaatgt 820  Q
    |||||||||||| |||||||||||||||   |||||||||||| ||||||||||||| |||||    
T  27208 ttgtgttgaaactccccaacaaaatgggagagttgaaaggaagcatcaacatattcttaatgt 27146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 758 - 820
Target Start/End: Original strand, 15193146 - 15193208
Alignment:
Q  758 ttgtgttgaaacaccccaacaaaatggggtggttgaaaggaagtatcaacatattctcaatgt 820  Q
    |||||||||||| |||||||||||||||   |||||||||||| ||||||||||||| |||||    
T  15193146 ttgtgttgaaactccccaacaaaatgggagagttgaaaggaagcatcaacatattcttaatgt 15193208  T

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Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 758 - 820
Target Start/End: Original strand, 18254024 - 18254086
Alignment:
Q  758 ttgtgttgaaacaccccaacaaaatggggtggttgaaaggaagtatcaacatattctcaatgt 820  Q
    |||||||||||| |||||||||||||||   |||||||||||| ||||||||||||| |||||    
T  18254024 ttgtgttgaaactccccaacaaaatgggagagttgaaaggaagcatcaacatattcttaatgt 18254086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 757 - 821
Target Start/End: Original strand, 51764235 - 51764299
Alignment:
Q  757 cttgtgttgaaacaccccaacaaaatggggtggttgaaaggaagtatcaacatattctcaatgtg 821  Q
    |||||||||| || || |||||||||||||| |||||||| ||| ||||||| ||||||||||||    
T  51764235 cttgtgttgagacgcctcaacaaaatggggttgttgaaagaaagaatcaacacattctcaatgtg 51764299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 759 - 812
Target Start/End: Original strand, 22643579 - 22643632
Alignment:
Q  759 tgtgttgaaacaccccaacaaaatggggtggttgaaaggaagtatcaacatatt 812  Q
    ||||||||||| |||||||||||||||  ||||||||| ||| |||||||||||    
T  22643579 tgtgttgaaactccccaacaaaatgggagggttgaaagaaagcatcaacatatt 22643632  T

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Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 758 - 820
Target Start/End: Original strand, 53978164 - 53978226
Alignment:
Q  758 ttgtgttgaaacaccccaacaaaatggggtggttgaaaggaagtatcaacatattctcaatgt 820  Q
    |||||||||||| |||||||||||||||   |||||||||||| ||||||||||||| |||||    
T  53978164 ttgtgttgaaactccccaacaaaatgggagagttgaaaggaagcatcaacatattcttaatgt 53978226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 756 - 820
Target Start/End: Original strand, 8836233 - 8836297
Alignment:
Q  756 tcttgtgttgaaacaccccaacaaaatggggtggttgaaaggaagtatcaacatattctcaatgt 820  Q
    |||||||||||||| ||||||||||||||    |||||||| ||| ||||||||||||| |||||    
T  8836233 tcttgtgttgaaactccccaacaaaatggtagagttgaaagaaagcatcaacatattcttaatgt 8836297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 758 - 820
Target Start/End: Complemental strand, 49641135 - 49641073
Alignment:
Q  758 ttgtgttgaaacaccccaacaaaatggggtggttgaaaggaagtatcaacatattctcaatgt 820  Q
    |||||||||||| |||||||||||||||   |||||||||||| ||||||||||||| |||||    
T  49641135 ttgtgttgaaactccccaacaaaatgggagagttgaaaggaagcatcaacatattcttaatgt 49641073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 757 - 821
Target Start/End: Original strand, 19481630 - 19481694
Alignment:
Q  757 cttgtgttgaaacaccccaacaaaatggggtggttgaaaggaagtatcaacatattctcaatgtg 821  Q
    |||||||||| || || |||||||||||||| |||||||| ||| ||||||| ||||||||||||    
T  19481630 cttgtgttgagacgcctcaacaaaatggggttgttgaaagaaagcatcaacacattctcaatgtg 19481694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 757 - 821
Target Start/End: Original strand, 11337765 - 11337829
Alignment:
Q  757 cttgtgttgaaacaccccaacaaaatggggtggttgaaaggaagtatcaacatattctcaatgtg 821  Q
    |||||||||| || || |||||||||||||  |||||||| ||| ||||||| ||||||||||||    
T  11337765 cttgtgttgagacgcctcaacaaaatggggctgttgaaagaaagcatcaacacattctcaatgtg 11337829  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 756 - 821
Target Start/End: Original strand, 34309881 - 34309946
Alignment:
Q  756 tcttgtgttgaaacaccccaacaaaatggggtggttgaaaggaagtatcaacatattctcaatgtg 821  Q
    ||||||||||| || || |||||||||||  | || ||||||||| |||||||||| |||||||||    
T  34309881 tcttgtgttgagactcctcaacaaaatggtattgtagaaaggaagcatcaacatatcctcaatgtg 34309946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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