View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3376_low_105 (Length: 238)
Name: NF3376_low_105
Description: NF3376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3376_low_105 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 174; Significance: 9e-94; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 5 - 182
Target Start/End: Original strand, 46072886 - 46073063
Alignment:
| Q |
5 |
tgctgctgctgttgttaaattgtttcttgggtttggggacatttgaattctctgattgcaaggaaggtggtggtagatttggaacaagaattatagtggc |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46072886 |
tgctgctgctgttgttaaattgtttcttgggtttggggacattggaattctctgattgcaaggaaggtggtggtagatttggaacaagaattatagtggc |
46072985 |
T |
|
| Q |
105 |
tttctgcaatttctttttcttattaccatgggcattattagatttgacctgcaatcaaagacagacatagtatacgtg |
182 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46072986 |
tttctgcaatttctttttcttattaccatgggcattattagatttgacctgcaatcaaagacagacatagtatacgtg |
46073063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 46077863 - 46077905
Alignment:
| Q |
184 |
agtcacaaattagtccattgaaactgctctctttattattttt |
226 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46077863 |
agtcacaaattagtccattgaaactgctctctttattattttt |
46077905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University