View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3376_low_106 (Length: 235)
Name: NF3376_low_106
Description: NF3376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3376_low_106 |
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Alignment Details
Target: chr4 (Bit Score: 110; Significance: 1e-55; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 73 - 186
Target Start/End: Complemental strand, 34139476 - 34139363
Alignment:
| Q |
73 |
ggagcagagagcattggtgaacaaggagaaagaaagattttctattccattctttttcaacccaggatatgatattgaaatcaagcctttggaggagctt |
172 |
Q |
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| T |
34139476 |
ggagcacagagcattggtgaacaaggagaaagaaagattttctattccattctttttcaacccaggatatgatattgaaatcaagcctttggaggagctt |
34139377 |
T |
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| Q |
173 |
attaacgagcaaaa |
186 |
Q |
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| T |
34139376 |
attaacgagcaaaa |
34139363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 73 - 173
Target Start/End: Complemental strand, 34136524 - 34136424
Alignment:
| Q |
73 |
ggagcagagagcattggtgaacaaggagaaagaaagattttctattccattctttttcaacccaggatatgatattgaaatcaagcctttggaggagctt |
172 |
Q |
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| T |
34136524 |
ggagcatagagtaatggtgaacaaggagaaagagaggttttctattccattcttcttcaatccaggacatgatgctgaaatcaagcctttggaggagctt |
34136425 |
T |
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| Q |
173 |
a |
173 |
Q |
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| T |
34136424 |
a |
34136424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 186
Target Start/End: Complemental strand, 34142131 - 34142043
Alignment:
| Q |
98 |
gagaaagaaagattttctattccattctttttcaacccaggatatgatattgaaatcaagcctttggaggagcttattaacgagcaaaa |
186 |
Q |
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||||| ||||| ||||||||||| |||||||| |||||||||||| |||| |||| ||||| || |||||||| || |||||||| |
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| T |
34142131 |
gagaaggaaaggttttctattcccttctttttattcccaggatatgacgctgaagtcaaaccttttgaagagcttataaatgagcaaaa |
34142043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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