View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3376_low_109 (Length: 232)

Name: NF3376_low_109
Description: NF3376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3376_low_109
NF3376_low_109
[»] chr6 (9 HSPs)
chr6 (29-218)||(24508914-24509103)
chr6 (11-218)||(24509632-24509839)
chr6 (1-220)||(21936738-21936957)
chr6 (17-218)||(21275702-21275902)
chr6 (25-218)||(20752200-20752393)
chr6 (40-218)||(11183263-11183441)
chr6 (11-218)||(21937499-21937705)
chr6 (41-218)||(2887419-2887596)
chr6 (41-218)||(2889141-2889318)
[»] chr2 (7 HSPs)
chr2 (17-218)||(30283516-30283716)
chr2 (37-218)||(14917476-14917657)
chr2 (17-218)||(17720601-17720801)
chr2 (25-218)||(42780113-42780305)
chr2 (17-218)||(45120315-45120515)
chr2 (39-218)||(16284365-16284546)
chr2 (53-184)||(716230-716361)
[»] chr7 (14 HSPs)
chr7 (17-218)||(14610293-14610493)
chr7 (17-218)||(12851603-12851803)
chr7 (17-218)||(12856718-12856918)
chr7 (17-218)||(26050950-26051150)
chr7 (17-218)||(26056063-26056263)
chr7 (17-218)||(26060309-26060509)
chr7 (17-218)||(26065422-26065622)
chr7 (39-222)||(4181478-4181660)
chr7 (52-218)||(11056554-11056720)
chr7 (40-218)||(37459938-37460116)
chr7 (74-218)||(35352422-35352566)
chr7 (105-218)||(5436692-5436805)
chr7 (48-149)||(5440393-5440494)
chr7 (48-149)||(5449403-5449504)
[»] chr4 (17 HSPs)
chr4 (25-218)||(32429365-32429558)
chr4 (25-218)||(30019932-30020125)
chr4 (17-218)||(35095957-35096157)
chr4 (17-218)||(35090844-35091044)
chr4 (38-213)||(18670776-18670949)
chr4 (41-218)||(47071337-47071514)
chr4 (37-218)||(18737089-18737272)
chr4 (40-215)||(34279588-34279763)
chr4 (37-218)||(18716416-18716599)
chr4 (40-214)||(54859254-54859428)
chr4 (39-217)||(34128333-34128511)
chr4 (46-218)||(3424802-3424975)
chr4 (39-153)||(14643826-14643940)
chr4 (125-218)||(3415334-3415427)
chr4 (158-218)||(14646483-14646543)
chr4 (58-117)||(34602060-34602119)
chr4 (41-89)||(25618387-25618435)
[»] chr3 (23 HSPs)
chr3 (17-218)||(8458240-8458440)
chr3 (17-218)||(8464679-8464879)
chr3 (17-217)||(6858130-6858329)
chr3 (17-218)||(4049736-4049936)
chr3 (37-218)||(5458106-5458287)
chr3 (37-218)||(5481582-5481763)
chr3 (17-218)||(6853027-6853227)
chr3 (17-218)||(10673013-10673213)
chr3 (17-218)||(10678128-10678328)
chr3 (17-218)||(31081582-31081782)
chr3 (17-218)||(1302320-1302520)
chr3 (17-218)||(10591370-10591570)
chr3 (17-218)||(31076477-31076677)
chr3 (17-218)||(33702675-33702875)
chr3 (17-218)||(4054870-4055070)
chr3 (17-210)||(33703236-33703428)
chr3 (46-218)||(20890989-20891160)
chr3 (39-218)||(29827358-29827532)
chr3 (25-218)||(49784423-49784618)
chr3 (40-218)||(3187551-3187728)
chr3 (41-212)||(18024246-18024416)
chr3 (17-151)||(10584933-10585066)
chr3 (145-218)||(10586384-10586457)
[»] chr8 (12 HSPs)
chr8 (17-218)||(14314986-14315186)
chr8 (17-218)||(14318690-14318890)
chr8 (17-218)||(26981951-26982151)
chr8 (17-218)||(26987064-26987264)
chr8 (37-218)||(34108158-34108339)
chr8 (27-218)||(10341041-10341232)
chr8 (39-217)||(18608724-18608902)
chr8 (25-218)||(25953241-25953434)
chr8 (17-218)||(43956924-43957124)
chr8 (75-214)||(18884997-18885136)
chr8 (17-161)||(18494251-18494394)
chr8 (47-118)||(1781868-1781939)
[»] chr5 (11 HSPs)
chr5 (29-218)||(2022893-2023082)
chr5 (17-218)||(9877614-9877814)
chr5 (17-218)||(39903774-39903974)
chr5 (17-218)||(39908887-39909087)
chr5 (17-218)||(9872499-9872699)
chr5 (17-218)||(13556380-13556580)
chr5 (39-218)||(35368987-35369166)
chr5 (32-210)||(4555590-4555768)
chr5 (53-218)||(25184027-25184186)
chr5 (96-218)||(43378366-43378488)
chr5 (41-112)||(43540857-43540928)
[»] chr1 (17 HSPs)
chr1 (17-218)||(3465402-3465602)
chr1 (17-218)||(28574226-28574426)
chr1 (17-218)||(28598238-28598438)
chr1 (17-204)||(3468010-3468196)
chr1 (25-218)||(13654264-13654459)
chr1 (29-205)||(10186665-10186845)
chr1 (39-218)||(1187757-1187935)
chr1 (25-218)||(43358680-43358875)
chr1 (13-218)||(44524093-44524294)
chr1 (29-200)||(19310771-19310942)
chr1 (38-179)||(35626140-35626281)
chr1 (72-218)||(16051135-16051281)
chr1 (40-149)||(17414633-17414742)
chr1 (105-218)||(48366213-48366326)
chr1 (105-205)||(29681532-29681632)
chr1 (39-136)||(21431768-21431865)
chr1 (40-217)||(3696403-3696578)
[»] scaffold0223 (1 HSPs)
scaffold0223 (37-218)||(2113-2294)
[»] scaffold0006 (1 HSPs)
scaffold0006 (25-218)||(144025-144220)
[»] scaffold0005 (2 HSPs)
scaffold0005 (39-153)||(173352-173466)
scaffold0005 (158-218)||(170747-170807)
[»] scaffold0391 (1 HSPs)
scaffold0391 (184-218)||(16536-16570)


Alignment Details
Target: chr6 (Bit Score: 150; Significance: 2e-79; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 29 - 218
Target Start/End: Original strand, 24508914 - 24509103
Alignment:
Q  29 aattttgtacagaattatgttacattaacaacataattctccatcattctcttactctaaatcatcaatcaattctctaatgcatgagttaattgttgga 128  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||    
T  24508914 aattttgtacaaaattatgttacattaacaacataattctccatcattcttttactctaaatcatccatcaattctctaatgcatgagtgaattgttgga 24509013  T
Q  129 accataaatctataaaatactgttatgagatacacttggtgtggttgtgcaatacacgtcaaggaactcatagtatcatgaaggggattc 218  Q
    | ||||||| | ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  24509014 atcataaatttgtaaaatactgttaggagatacgcttggtgtggttgtgcaatacacgtcaaggaactcatagtattatgaaggggattc 24509103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 11 - 218
Target Start/End: Complemental strand, 24509839 - 24509632
Alignment:
Q  11 acaacaacaactatacacaattttgtacagaattatgttacattaacaacataattctccatcattctcttactctaaatcatcaatcaattctctaatg 110  Q
    |||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||    
T  24509839 acaacaacaattatacataattttgtacaaaattatgttacattaacaacataattctccatcattcttttactttaaatcatccatcaattctctaatg 24509740  T
Q  111 catgagttaattgttggaaccataaatctataaaatactgttatgagatacacttggtgtggttgtgcaatacacgtcaaggaactcatagtatcatgaa 210  Q
    ||| ||| ||||||||||||||||||| | ||||||||||||| ||||||| | ||||||||||||||||||||| |||||||||||||||||| |||||    
T  24509739 cattagtgaattgttggaaccataaatttgtaaaatactgttaggagatacgcatggtgtggttgtgcaatacacatcaaggaactcatagtattatgaa 24509640  T
Q  211 ggggattc 218  Q
    ||||||||    
T  24509639 ggggattc 24509632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 21936738 - 21936957
Alignment:
Q  1 ttagtttaacacaacaacaactatacacaattttgtacagaattatgttacattaacaacataattctccatcattctcttactctaaatcatcaatcaa 100  Q
    ||||||||||||||||||||| | ||||||||||| || ||| | |||||||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  21936738 ttagtttaacacaacaacaacaacacacaattttggactgaactttgttacattaacaacataattctccatcattctcatactctaaatcatctatcaa 21936837  T
Q  101 ttctctaatgcatgagttaattgttggaaccataaatctataaaatactgttatgagatacacttggtgtggttgtgcaatacacgtcaaggaactcata 200  Q
    ||||||||||||||||| ||||| ||||||||||||||| ||||||| | ||| |||||||||| | |||||||||||||||||| ||||||||||||||    
T  21936838 ttctctaatgcatgagtgaattgctggaaccataaatctgtaaaatattattaggagatacactcgatgtggttgtgcaatacacatcaaggaactcata 21936937  T
Q  201 gtatcatgaaggggattctc 220  Q
    ||||  ||||||||||||||    
T  21936938 gtattctgaaggggattctc 21936957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 17 - 218
Target Start/End: Complemental strand, 21275902 - 21275702
Alignment:
Q  17 acaactatacacaattttgtacagaattatgttacattaacaacataattctccatcattctcttactctaaatcatcaatcaattctctaatgcatgag 116  Q
    ||||||| ||||||||| | |||||||| ||||||||||||||||||||||| || |||||| ||| ||||||||||| |||||||||||||||||||||    
T  21275902 acaactacacacaatttgg-acagaattttgttacattaacaacataattcttcaccattctattattctaaatcatccatcaattctctaatgcatgag 21275804  T
Q  117 ttaattgttggaaccataaatctataaaatactgttatgagatacacttggtgtggttgtgcaatacacgtcaaggaactcatagtatcatgaaggggat 216  Q
    | ||||| ||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  21275803 tgaattgctggaaccataaatctgtaaaatactgttaggagatacgcttggtgtggttgtgcaatacacgtcaaggaactcatagtatcctgaaggggat 21275704  T
Q  217 tc 218  Q
    ||    
T  21275703 tc 21275702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 25 - 218
Target Start/End: Original strand, 20752200 - 20752393
Alignment:
Q  25 acacaattttgtacagaattatgttacattaacaacataattctccatcattctcttactctaaatcatcaatcaattctctaatgcatgagttaattgt 124  Q
    ||||| ||||| | |||||| ||||||||||||||||||||||| || |||||||||||| ||| ||||| ||||||||||| |||||||||| ||||||    
T  20752200 acacagttttggaaagaattttgttacattaacaacataattcttcaccattctcttactataagtcatccatcaattctctgatgcatgagtgaattgt 20752299  T
Q  125 tggaaccataaatctataaaatactgttatgagatacacttggtgtggttgtgcaatacacgtcaaggaactcatagtatcatgaaggggattc 218  Q
    ||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||    
T  20752300 tggaaccataaatctgtaaaatactgttaggagatacgcttggtgtggttgtgcaatacacgtcaaggaactcgtagtatcctgaaggggattc 20752393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 40 - 218
Target Start/End: Original strand, 11183263 - 11183441
Alignment:
Q  40 gaattatgttacattaacaacataattctccatcattctcttactctaaatcatcaatcaattctctaatgcatgagttaattgttggaaccataaatct 139  Q
    ||||| ||||||| ||| ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||| ||    
T  11183263 gaattttgttacaataataacataattctctctcattctcttactctaaatcatcaatcaattctctaatgcatgagtaaattgctgaaaccataaacct 11183362  T
Q  140 ataaaatactgttatgagatacacttggtgtggttgtgcaatacacgtcaaggaactcatagtatcatgaaggggattc 218  Q
     ||||||||||||| |||||||| |||||||||||||| ||||||| |||||||||||||| |||| |||| |||||||    
T  11183363 gtaaaatactgttaggagatacatttggtgtggttgtgtaatacacatcaaggaactcataatatcttgaatgggattc 11183441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 11 - 218
Target Start/End: Complemental strand, 21937705 - 21937499
Alignment:
Q  11 acaacaacaactatacacaattttgtacagaattatgttacattaacaacataattctccatcattctcttactctaaatcatcaatcaattctctaatg 110  Q
    ||||||||||| | ||||||||||| ||| |||| ||| ||||||||||||||||| ||||||| ||||||| |||||| |||| |||||||||| ||||    
T  21937705 acaacaacaacaacacacaattttggacataattttgt-acattaacaacataattttccatcactctcttattctaaaacatccatcaattctcaaatg 21937607  T
Q  111 catgagttaattgttggaaccataaatctataaaatactgttatgagatacacttggtgtggttgtgcaatacacgtcaaggaactcatagtatcatgaa 210  Q
    ||||||| ||||| ||||||||||||| | || |||| ||||| ||||||| |||||||||||||||||||||||  |||||||||||||||||| | ||    
T  21937606 catgagtgaattgctggaaccataaatttgtataatattgttacgagatacgcttggtgtggttgtgcaatacacaacaaggaactcatagtatcctaaa 21937507  T
Q  211 ggggattc 218  Q
    ||||||||    
T  21937506 ggggattc 21937499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 41 - 218
Target Start/End: Complemental strand, 2887596 - 2887419
Alignment:
Q  41 aattatgttacattaacaacataattctccatcattctcttactctaaatcatcaatcaattctctaatgcatgagttaattgttggaaccataaatcta 140  Q
    |||| |||| ||||| |||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||| ||||| ||||| |||||||||     
T  2887596 aattttgttccattaccaacataattctccctcattctcttactctaaatcatccatcaactctctaatgcatgagtgaattgctggaatcataaatctg 2887497  T
Q  141 taaaatactgttatgagatacacttggtgtggttgtgcaatacacgtcaaggaactcatagtatcatgaaggggattc 218  Q
    ||||||| ||||| |||||| | |||||||||||||||||||||||| |||||| |||||||||| ||||| ||||||    
T  2887496 taaaatagtgttaagagatatatttggtgtggttgtgcaatacacgtgaaggaattcatagtatcgtgaagaggattc 2887419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 41 - 218
Target Start/End: Complemental strand, 2889318 - 2889141
Alignment:
Q  41 aattatgttacattaacaacataattctccatcattctcttactctaaatcatcaatcaattctctaatgcatgagttaattgttggaaccataaatcta 140  Q
    |||| |||| ||||| |||||||||||||| ||||||||||||||||||||||  ||||| |||||||||||||||| ||||| ||||| |||||||||     
T  2889318 aattttgttccattaccaacataattctccctcattctcttactctaaatcattcatcaactctctaatgcatgagtgaattgctggaatcataaatctg 2889219  T
Q  141 taaaatactgttatgagatacacttggtgtggttgtgcaatacacgtcaaggaactcatagtatcatgaaggggattc 218  Q
    ||||||| ||||| |||||| | |||||||||||||||||||||||| |||||| |||||||||| ||||| ||||||    
T  2889218 taaaatagtgttaagagatatatttggtgtggttgtgcaatacacgtgaaggaattcatagtatcgtgaagaggattc 2889141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 146; Significance: 5e-77; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 17 - 218
Target Start/End: Original strand, 30283516 - 30283716
Alignment:
Q  17 acaactatacacaattttgtacagaattatgttacattaacaacataattctccatcattctcttactctaaatcatcaatcaattctctaatgcatgag 116  Q
    ||||||| ||||||||| | |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  30283516 acaactaaacacaatttgg-acagaattttgttacattaacaacataattctccatccttctcttactctaaatcatcaatcaattctctaatgcatgag 30283614  T
Q  117 ttaattgttggaaccataaatctataaaatactgttatgagatacacttggtgtggttgtgcaatacacgtcaaggaactcatagtatcatgaaggggat 216  Q
    | ||||| | ||||||||||||| ||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  30283615 tgaattgctagaaccataaatctgtaaaatactattaggagatacgcttggtgtggttgtgcaatacacgtcaaggaactcatagtatcctgaaggggat 30283714  T
Q  217 tc 218  Q
    ||    
T  30283715 tc 30283716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 37 - 218
Target Start/End: Original strand, 14917476 - 14917657
Alignment:
Q  37 acagaattatgttacattaacaacataattctccatcattctcttactctaaatcatcaatcaattctctaatgcatgagttaattgttggaaccataaa 136  Q
    |||||||| ||||||||||||||||||||||| ||||||||| ||| ||||||||||| |||||||||||||||||||||| ||||| ||||||||||||    
T  14917476 acagaattttgttacattaacaacataattcttcatcattctattattctaaatcatccatcaattctctaatgcatgagtgaattgctggaaccataaa 14917575  T
Q  137 tctataaaatactgttatgagatacacttggtgtggttgtgcaatacacgtcaaggaactcatagtatcatgaaggggattc 218  Q
    ||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  14917576 tctgtaaaatactgttaggagatacgcttggtgtggttgtgcaatacacgtcaaggaactcatagtatcctgaaggggattc 14917657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 17 - 218
Target Start/End: Original strand, 17720601 - 17720801
Alignment:
Q  17 acaactatacacaattttgtacagaattatgttacattaacaacataattctccatcattctcttactctaaatcatcaatcaattctctaatgcatgag 116  Q
    ||||||| ||||||||| | |||||||| ||||||||||||||||||||||| || |||||| ||| ||||||||||| |||||||||||||||||||||    
T  17720601 acaactacacacaatttgg-acagaattttgttacattaacaacataattcttcaccattctattattctaaatcatccatcaattctctaatgcatgag 17720699  T
Q  117 ttaattgttggaaccataaatctataaaatactgttatgagatacacttggtgtggttgtgcaatacacgtcaaggaactcatagtatcatgaaggggat 216  Q
    | ||||| ||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  17720700 tgaattgctggaaccataaatctgtaaaatactgttaggagatacgcttggtgtggttgtgcaatacacgtcaaggaactcatagtatcctgaaggggat 17720799  T
Q  217 tc 218  Q
    ||    
T  17720800 tc 17720801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 25 - 218
Target Start/End: Complemental strand, 42780305 - 42780113
Alignment:
Q  25 acacaattttgtacagaattatgttacattaacaacataattctccatcattctcttactctaaatcatcaatcaattctctaatgcatgagttaattgt 124  Q
    ||||||||||| |||||||| |||||||||| | |||||||||| || |||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  42780305 acacaattttggacagaattttgttacatta-ctacataattcttcaccattctcttactctaaatcatccatcaattctctaatgcatgagtgaattgt 42780207  T
Q  125 tggaaccataaatctataaaatactgttatgagatacacttggtgtggttgtgcaatacacgtcaaggaactcatagtatcatgaaggggattc 218  Q
    ||||||||||||| | ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  42780206 tggaaccataaatttgtaaaatactgttaggagatacatttggtgtggttgtgcaatacacgtcaaggaactcatagtatcctgaaggggattc 42780113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 17 - 218
Target Start/End: Complemental strand, 45120515 - 45120315
Alignment:
Q  17 acaactatacacaattttgtacagaattatgttacattaacaacataattctccatcattctcttactctaaatcatcaatcaattctctaatgcatgag 116  Q
    ||||||| ||||||||| | |||||||| ||||||||||||||||||||||| ||||||||| ||| ||||||||||| |||||||||| ||||||||||    
T  45120515 acaactacacacaatttgg-acagaattttgttacattaacaacataattcttcatcattctattattctaaatcatccatcaattctccaatgcatgag 45120417  T
Q  117 ttaattgttggaaccataaatctataaaatactgttatgagatacacttggtgtggttgtgcaatacacgtcaaggaactcatagtatcatgaaggggat 216  Q
    | ||||| ||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  45120416 tgaattgctggaaccataaatctgtaaaatactgttaggagatacgcttggtgtggttgtgcaatacacgtcaaggaactcatagtatcctgaaggggat 45120317  T
Q  217 tc 218  Q
    ||    
T  45120316 tc 45120315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 39 - 218
Target Start/End: Complemental strand, 16284546 - 16284365
Alignment:
Q  39 agaattatgttacattaacaacataattctccatcattctcttactctaaa-tcatcaatcaattctctaatgcatgagttaattgttggaaccataaat 137  Q
    |||||| |||| ||||||||| |||||||||| |||||||||||||||||| ||||  ||||| |||||||||||||||| ||||| || ||||||||||    
T  16284546 agaattttgttgcattaacaatataattctccctcattctcttactctaaaatcattcatcaactctctaatgcatgagtgaattgctgaaaccataaat 16284447  T
Q  138 ctataaaatactgttatgagatacacttggtgtggttgtgcaatacacgtcaaggaactcatagtatcatg-aaggggattc 218  Q
    |  ||||||||  ||| ||||||| |||||||||||||| |||||||||||||||||||||||||||| || ||||||||||    
T  16284446 cagtaaaataccattaggagatacgcttggtgtggttgtacaatacacgtcaaggaactcatagtatcctgaaaggggattc 16284365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 53 - 184
Target Start/End: Complemental strand, 716361 - 716230
Alignment:
Q  53 ttaacaacataattctccatcattctcttactctaaatcatcaatcaattctctaatgcatgagttaattgttggaaccataaatctataaaatactgtt 152  Q
    |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||| ||||||| |||||||| |||    
T  716361 ttaacaacataattctccttcattctcttactctaaatcatccatcaattctctaatgcatgagtgaattgctggaaccctaaatctgtaaaatacagtt 716262  T
Q  153 atgagatacacttggtgtggttgtgcaataca 184  Q
    | |||||||  ||||||||||||| |||||||    
T  716261 aggagatacgtttggtgtggttgtacaataca 716230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 142; Significance: 1e-74; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 17 - 218
Target Start/End: Complemental strand, 14610493 - 14610293
Alignment:
Q  17 acaactatacacaattttgtacagaattatgttacattaacaacataattctccatcattctcttactctaaatcatcaatcaattctctaatgcatgag 116  Q
    ||||||| ||||||||| | |||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||    
T  14610493 acaactacacacaatttgg-acagaattttgttacattaacaacataattcttcatcattctcttattctaaatcatccatcaattctctaatgcatgag 14610395  T
Q  117 ttaattgttggaaccataaatctataaaatactgttatgagatacacttggtgtggttgtgcaatacacgtcaaggaactcatagtatcatgaaggggat 216  Q
    | ||||| ||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  14610394 tgaattgctggaaccataaatctgtaaaatactgttaggagatacgcttggtgtggttgtgcaatacacgtcaagaaactcatagtatcctgaaggggat 14610295  T
Q  217 tc 218  Q
    ||    
T  14610294 tc 14610293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 17 - 218
Target Start/End: Complemental strand, 12851803 - 12851603
Alignment:
Q  17 acaactatacacaattttgtacagaattatgttacattaacaacataattctccatcattctcttactctaaatcatcaatcaattctctaatgcatgag 116  Q
    ||||||| ||||||||| | ||| |||| ||||||||||||||||||||||| ||||||||| ||| ||||||||||| |||||||||||||||||||||    
T  12851803 acaactacacacaatttgg-acaaaattttgttacattaacaacataattcttcatcattctattattctaaatcatccatcaattctctaatgcatgag 12851705  T
Q  117 ttaattgttggaaccataaatctataaaatactgttatgagatacacttggtgtggttgtgcaatacacgtcaaggaactcatagtatcatgaaggggat 216  Q
    | ||||| ||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  12851704 tgaattgctggaaccataaatctgtaaaatactgttaggagatacgcttggtgtggttgtgcaatacacgtcaaggaactcatagtatcctgaaggggat 12851605  T
Q  217 tc 218  Q
    ||    
T  12851604 tc 12851603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 17 - 218
Target Start/End: Complemental strand, 12856918 - 12856718
Alignment:
Q  17 acaactatacacaattttgtacagaattatgttacattaacaacataattctccatcattctcttactctaaatcatcaatcaattctctaatgcatgag 116  Q
    ||||||| ||||||||| | |||||||| ||||||||||||||||||||||| || |||||| ||| ||||||||||| |||||||||||||||||||||    
T  12856918 acaactacacacaatttgg-acagaattttgttacattaacaacataattcttcaccattctattattctaaatcatccatcaattctctaatgcatgag 12856820  T
Q  117 ttaattgttggaaccataaatctataaaatactgttatgagatacacttggtgtggttgtgcaatacacgtcaaggaactcatagtatcatgaaggggat 216  Q
    | ||||| ||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  12856819 tgaattgctggaaccataaatctgtaaaatactgttaggagatacgcttggtgtggttgtgcaatacacgtcaaggaactcatagtatcctgaaggggat 12856720  T
Q  217 tc 218  Q
    ||    
T  12856719 tc 12856718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 17 - 218
Target Start/End: Complemental strand, 26051150 - 26050950
Alignment:
Q  17 acaactatacacaattttgtacagaattatgttacattaacaacataattctccatcattctcttactctaaatcatcaatcaattctctaatgcatgag 116  Q
    ||||||| ||||||||| | |||||||| ||||||||||||||||||||||| || |||||| ||| ||||||||||| |||||||||||||||||||||    
T  26051150 acaactacacacaatttgg-acagaattttgttacattaacaacataattcttcaccattctattattctaaatcatccatcaattctctaatgcatgag 26051052  T
Q  117 ttaattgttggaaccataaatctataaaatactgttatgagatacacttggtgtggttgtgcaatacacgtcaaggaactcatagtatcatgaaggggat 216  Q
    | ||||| ||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  26051051 tgaattgctggaaccataaatctgtaaaatactgttaggagatacgcttggtgtggttgtgcaatacacgtcaaggaactcatagtatcctgaaggggat 26050952  T
Q  217 tc 218  Q
    ||    
T  26050951 tc 26050950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 17 - 218
Target Start/End: Complemental strand, 26056263 - 26056063
Alignment:
Q  17 acaactatacacaattttgtacagaattatgttacattaacaacataattctccatcattctcttactctaaatcatcaatcaattctctaatgcatgag 116  Q
    ||||||| ||||||||| | |||||||| ||||||||||||||||||||||| || |||||| ||| ||||||||||| |||||||||||||||||||||    
T  26056263 acaactacacacaatttgg-acagaattttgttacattaacaacataattcttcaccattctattattctaaatcatccatcaattctctaatgcatgag 26056165  T
Q  117 ttaattgttggaaccataaatctataaaatactgttatgagatacacttggtgtggttgtgcaatacacgtcaaggaactcatagtatcatgaaggggat 216  Q
    | ||||| ||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  26056164 tgaattgctggaaccataaatctgtaaaatactgttaggagatacgcttggtgtggttgtgcaatacacgtcaaggaactcatagtatcctgaaggggat 26056065  T
Q  217 tc 218  Q
    ||    
T  26056064 tc 26056063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 17 - 218
Target Start/End: Complemental strand, 26060509 - 26060309
Alignment:
Q  17 acaactatacacaattttgtacagaattatgttacattaacaacataattctccatcattctcttactctaaatcatcaatcaattctctaatgcatgag 116  Q
    ||||||| ||||||||| | |||||||| ||||||||||||||||||||||| || |||||| ||| ||||||||||| |||||||||||||||||||||    
T  26060509 acaactacacacaatttgg-acagaattttgttacattaacaacataattcttcaccattctattattctaaatcatccatcaattctctaatgcatgag 26060411  T
Q  117 ttaattgttggaaccataaatctataaaatactgttatgagatacacttggtgtggttgtgcaatacacgtcaaggaactcatagtatcatgaaggggat 216  Q
    | ||||| ||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  26060410 tgaattgctggaaccataaatctgtaaaatactgttaggagatacgcttggtgtggttgtgcaatacacgtcaaggaactcatagtatcctgaaggggat 26060311  T
Q  217 tc 218  Q
    ||    
T  26060310 tc 26060309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 17 - 218
Target Start/End: Complemental strand, 26065622 - 26065422
Alignment:
Q  17 acaactatacacaattttgtacagaattatgttacattaacaacataattctccatcattctcttactctaaatcatcaatcaattctctaatgcatgag 116  Q
    ||||||| ||||||||| | |||||||| ||||||||||||||||||||||| || |||||| ||| ||||||||||| |||||||||||||||||||||    
T  26065622 acaactacacacaatttgg-acagaattttgttacattaacaacataattcttcaccattctattattctaaatcatccatcaattctctaatgcatgag 26065524  T
Q  117 ttaattgttggaaccataaatctataaaatactgttatgagatacacttggtgtggttgtgcaatacacgtcaaggaactcatagtatcatgaaggggat 216  Q
    | ||||| ||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  26065523 tgaattgctggaaccataaatctgtaaaatactgttaggagatacgcttggtgtggttgtgcaatacacgtcaaggaactcatagtatcctgaaggggat 26065424  T
Q  217 tc 218  Q
    ||    
T  26065423 tc 26065422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 39 - 222
Target Start/End: Original strand, 4181478 - 4181660
Alignment:
Q  39 agaattatgttacattaacaacataattctccatcattctcttactctaaatcatcaatcaattctctaatgcatgagttaattgttggaaccataaatc 138  Q
    |||||| |||| |||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||| | ||| | |||||||||| |    
T  4181478 agaattttgttgcattaacaacataattctccctcattctcttaatctaaatcatccatcaattctctaatgcatgagtga-ttgctcgaaccataaacc 4181576  T
Q  139 tataaaatactgttatgagatacacttggtgtggttgtgcaatacacgtcaaggaactcatagtatcatgaaggggattctctg 222  Q
      |||||||||||||  |||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  4181577 cgtaaaatactgttagtagatacgcttgatgtggttgtgcaatacatgtcaaggaactcatagtatcatgaaggggattctctg 4181660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 52 - 218
Target Start/End: Complemental strand, 11056720 - 11056554
Alignment:
Q  52 attaacaacataattctccatcattctcttactctaaatcatcaatcaattctctaatgcatgagttaattgttggaaccataaatctataaaatactgt 151  Q
    |||||||||||||||||  |||||||||||||| ||||||||| ||||||||| |||||||||||| ||||||||||||||||||||| ||||||||| |    
T  11056720 attaacaacataattctttatcattctcttactttaaatcatccatcaattctttaatgcatgagtgaattgttggaaccataaatctgtaaaatactat 11056621  T
Q  152 tatgagatacacttggtgtggttgtgcaatacacgtcaaggaactcatagtatcatgaaggggattc 218  Q
    || |||||||  |||||||| |||||||| |||||||||||||||||||||||| ||||||||||||    
T  11056620 taggagatacgtttggtgtgattgtgcaacacacgtcaaggaactcatagtatcctgaaggggattc 11056554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 40 - 218
Target Start/End: Original strand, 37459938 - 37460116
Alignment:
Q  40 gaattatgttacattaacaacataattctccatcattctcttactctaaatcatcaatcaattctctaatgcatgagttaattgttggaaccataaatct 139  Q
    |||||||||||||| ||||||||||||||||  |||||||||||||||||||||| ||||||||||| |||||| ||  ||||| || ||||||| ||||    
T  37459938 gaattatgttacatgaacaacataattctcccacattctcttactctaaatcatccatcaattctctgatgcattagcgaattgctgaaaccatatatct 37460037  T
Q  140 ataaaatactgttatgagatacacttggtgtggttgtgcaatacacgtcaaggaactcatagtatcatgaaggggattc 218  Q
     ||||||| ||||| ||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||    
T  37460038 gtaaaatattgttaagagatacgcttgatgtggttgtgcaatacacatcaaggaactcatagtatcatgaagtggattc 37460116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 74 - 218
Target Start/End: Original strand, 35352422 - 35352566
Alignment:
Q  74 attctcttactctaaatcatcaatcaattctctaatgcatgagttaattgttggaaccataaatctataaaatactgttatgagatacacttggtgtggt 173  Q
    ||||||||||| |||| |||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||| ||| |||| ||||||    
T  35352422 attctcttactataaaccatccatcaattctctaatgcatgagtgaattgctggaaccataaatctataaaatactgttaggagttactcttgatgtggt 35352521  T
Q  174 tgtgcaatacacgtcaaggaactcatagtatcatgaaggggattc 218  Q
    |||||||||||| ||| ||||||||||||||| ||||| ||||||    
T  35352522 tgtgcaatacacatcatggaactcatagtatcctgaagaggattc 35352566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 105 - 218
Target Start/End: Original strand, 5436692 - 5436805
Alignment:
Q  105 ctaatgcatgagttaattgttggaaccataaatctataaaatactgttatgagatacacttggtgtggttgtgcaatacacgtcaaggaactcatagtat 204  Q
    ||||||||| ||| ||||| | ||||||||||||| ||||||| ||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  5436692 ctaatgcattagtgaattgcttgaaccataaatctgtaaaatattgttaggagatacgcttggtgtggttgtgcaatacacgtcaaggacctcatagtat 5436791  T
Q  205 catgaaggggattc 218  Q
    | | ||||| ||||    
T  5436792 cctcaagggaattc 5436805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 48 - 149
Target Start/End: Original strand, 5440393 - 5440494
Alignment:
Q  48 ttacattaacaacataattctccatcattctcttactctaaatcatcaatcaattctctaatgcatgagttaattgttggaaccataaatctataaaata 147  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||| || ||||| ||||| |||||||||| |||| |||||||    
T  5440393 ttacattaacaacataattctccctcattcccttactctaaatcatcgatcaattctctaaagcttgagtaaattgctggaaccatacatctgtaaaata 5440492  T
Q  148 ct 149  Q
    ||    
T  5440493 ct 5440494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 48 - 149
Target Start/End: Original strand, 5449403 - 5449504
Alignment:
Q  48 ttacattaacaacataattctccatcattctcttactctaaatcatcaatcaattctctaatgcatgagttaattgttggaaccataaatctataaaata 147  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||| || ||||| ||||| |||||||||| |||| |||||||    
T  5449403 ttacattaacaacataattctccctcattcccttactctaaatcatcgatcaattctctaaagcttgagtaaattgctggaaccatacatctgtaaaata 5449502  T
Q  148 ct 149  Q
    ||    
T  5449503 ct 5449504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 142; Significance: 1e-74; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 25 - 218
Target Start/End: Original strand, 32429365 - 32429558
Alignment:
Q  25 acacaattttgtacagaattatgttacattaacaacataattctccatcattctcttactctaaatcatcaatcaattctctaatgcatgagttaattgt 124  Q
    ||||||||||| |||||||| ||||  ||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||| ||||||    
T  32429365 acacaattttggacagaattttgttggattaacaacataattctccctcattctcttactctaaatcatccatcaattctttaatgcatgagtgaattgt 32429464  T
Q  125 tggaaccataaatctataaaatactgttatgagatacacttggtgtggttgtgcaatacacgtcaaggaactcatagtatcatgaaggggattc 218  Q
    ||||||||||||||| ||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  32429465 tggaaccataaatctgtaaaatactgttaggagatacgctttgtgtggttgtgcaatacacgtcaaggaactcatagtatcctgaaggggattc 32429558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 25 - 218
Target Start/End: Original strand, 30019932 - 30020125
Alignment:
Q  25 acacaattttgtacagaattatgttacattaacaacataattctccatcattctcttactctaaatcatcaatcaattctctaatgcatgagttaattgt 124  Q
    ||||||||||| |||||||| ||||||||||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  30019932 acacaattttggacagaattttgttacattaacaacataattcttcaccattctcttactctaaatcatccatcaattctctaatgcatgagtgaattgt 30020031  T
Q  125 tggaaccataaatctataaaatactgttatgagatacacttggtgtggttgtgcaatacacgtcaaggaactcatagtatcatgaaggggattc 218  Q
    ||||||||||||| | | ||||||||||| |||||||  ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  30020032 tggaaccataaatatgtgaaatactgttaggagatacgtttggtgtggttatgcaatacacgtcaaggaactcatagtatcctgaaggggattc 30020125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 17 - 218
Target Start/End: Complemental strand, 35096157 - 35095957
Alignment:
Q  17 acaactatacacaattttgtacagaattatgttacattaacaacataattctccatcattctcttactctaaatcatcaatcaattctctaatgcatgag 116  Q
    ||||||| ||||||||| | |||||||| ||||||||||||||||||||||| || |||||| ||| ||||||||||| |||||||||||||||||||||    
T  35096157 acaactacacacaatttgg-acagaattttgttacattaacaacataattcttcaccattctattattctaaatcatccatcaattctctaatgcatgag 35096059  T
Q  117 ttaattgttggaaccataaatctataaaatactgttatgagatacacttggtgtggttgtgcaatacacgtcaaggaactcatagtatcatgaaggggat 216  Q
    | ||||| ||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  35096058 tgaattgctggaaccataaatctgtaaaatactgttaggagatacgcttggtgtggttgtgcaatacacgtcaaggaactcatagtatcctgaaggggat 35095959  T
Q  217 tc 218  Q
    ||    
T  35095958 tc 35095957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 17 - 218
Target Start/End: Complemental strand, 35091044 - 35090844
Alignment:
Q  17 acaactatacacaattttgtacagaattatgttacattaacaacataattctccatcattctcttactctaaatcatcaatcaattctctaatgcatgag 116  Q
    ||||||| ||||||||| | |||||||| ||||||||||||||||||||||  ||  ||||| ||| ||||||||||| |||||||||||||||||||||    
T  35091044 acaactacacacaatttgg-acagaattttgttacattaacaacataattcatcaaaattctattattctaaatcatccatcaattctctaatgcatgag 35090946  T
Q  117 ttaattgttggaaccataaatctataaaatactgttatgagatacacttggtgtggttgtgcaatacacgtcaaggaactcatagtatcatgaaggggat 216  Q
    | ||||| ||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  35090945 tgaattgctggaaccataaatctgtaaaatactgttaggagatacgcttggtgtggttgtgcaatacacgtcaaggaactcatagtatcctgaaggggat 35090846  T
Q  217 tc 218  Q
    ||    
T  35090845 tc 35090844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 38 - 213
Target Start/End: Complemental strand, 18670949 - 18670776
Alignment:
Q  38 cagaattatgttacattaacaacataattctccatcattctcttactctaaatcatcaatcaattctctaatgcatgagttaattgttggaaccataaat 137  Q
    |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||||||    
T  18670949 cagaattatgttgcattaacaacataattctccctcattctcttactctaaatcatccatcaattctctaatgcatgagtgacttgttggaaccataaat 18670850  T
Q  138 ctataaaatactgttatgagatacacttggtgtggttgtgcaatacacgtcaaggaactcatagtatcatgaaggg 213  Q
    || ||||||| ||||| ||||||||||||||||||||||||||||||  | ||||||||||||||||| |||||||    
T  18670849 ctgtaaaatattgttaggagatacacttggtgtggttgtgcaataca--tgaaggaactcatagtatcctgaaggg 18670776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 41 - 218
Target Start/End: Complemental strand, 47071514 - 47071337
Alignment:
Q  41 aattatgttacattaacaacataattctccatcattctcttactctaaatcatcaatcaattctctaatgcatgagttaattgttggaaccataaatcta 140  Q
    |||| ||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||| |||||| ||||||| ||||||||||| |     
T  47071514 aattttgttacattaacaacataattctccctcattctcttactctaaattatctatcaattctctaatgaatgagtgaattgtttgaaccataaatttg 47071415  T
Q  141 taaaatactgttatgagatacacttggtgtggttgtgcaatacacgtcaaggaactcatagtatcatgaaggggattc 218  Q
    |||||||||| |||||||||   |||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  47071414 taaaatactgatatgagatatgattggtgtggttgtgcaatacacatcaaggaactcatagtatcatgaaggggattc 47071337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 37 - 218
Target Start/End: Complemental strand, 18737272 - 18737089
Alignment:
Q  37 acagaattatgttacattaacaacataattctccatcattctcttactctaaatcatcaatcaattctctaatgcatgagttaattgttggaaccataaa 136  Q
    |||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||| ||||| ||||||||||||    
T  18737272 acagaattttgttgcattaacaacataattctccctcattctcttactctaaatcatccatcaattctctaattcatgagtgaattgctggaaccataaa 18737173  T
Q  137 tctataaaatactgttatgagatacacttg--gtgtggttgtgcaatacacgtcaaggaactcatagtatcatgaaggggattc 218  Q
    ||| ||||||||| |||  |||| | ||||  ||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  18737172 tctgtaaaatacttttagaagattcgcttggtgtgtggttgtgcaatacacgtcaaggaactcatagtatcctgaaggggattc 18737089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 40 - 215
Target Start/End: Original strand, 34279588 - 34279763
Alignment:
Q  40 gaattatgttacattaacaacataattctccatcattctcttactctaaatcatcaatcaattctctaatgcatgagttaattgttggaaccataaatct 139  Q
    ||||| ||||||||||||||||||||||| | || |||||||||||||||||| | |||||||||||||||||||||| ||||  || ||||||||||||    
T  34279588 gaattttgttacattaacaacataattcttcctcgttctcttactctaaatcaaccatcaattctctaatgcatgagtgaattcctgaaaccataaatct 34279687  T
Q  140 ataaaatactgttatgagatacacttggtgtggttgtgcaatacacgtcaaggaactcatagtatcatgaagggga 215  Q
     ||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||  |||||||||    
T  34279688 gtaaaatactgttaggagatacgcttggtgtggttgtgcaatacacgtcaagaaactcatagtattttgaagggga 34279763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 37 - 218
Target Start/End: Complemental strand, 18716599 - 18716416
Alignment:
Q  37 acagaattatgttacattaacaacataattctccatcattctcttactctaaatcatcaatcaattctctaatgcatgagttaattgttggaaccataaa 136  Q
    |||||||| |||| ||||||||||||||||||||  |||||||||||||||||||||| |||||||||||||| || |||| ||||| ||||||||||||    
T  18716599 acagaattttgttgcattaacaacataattctcccccattctcttactctaaatcatccatcaattctctaatacaagagtgaattgctggaaccataaa 18716500  T
Q  137 tctataaaatactgttatgagatacacttg--gtgtggttgtgcaatacacgtcaaggaactcatagtatcatgaaggggattc 218  Q
    ||| ||||||||| |||  |||||| ||||  |||||||||||||||||||||||| |||||| ||||||| ||||||||||||    
T  18716499 tctgtaaaatactattagaagatacgcttggtgtgtggttgtgcaatacacgtcaaagaactcttagtatcctgaaggggattc 18716416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 40 - 214
Target Start/End: Original strand, 54859254 - 54859428
Alignment:
Q  40 gaattatgttacattaacaacataattctccatcattctcttactctaaatcatcaatcaattctctaatgcatgagttaattgttggaaccataaatct 139  Q
    ||||| ||| ||||||||||||| ||||||| |||||||||| |||||||||||| ||||||||||||||||| |||| ||||| ||||||||||||||     
T  54859254 gaattttgtcacattaacaacatgattctccctcattctcttgctctaaatcatccatcaattctctaatgcacgagtgaattgctggaaccataaatcc 54859353  T
Q  140 ataaaatactgttatgagatacacttggtgtggttgtgcaatacacgtcaaggaactcatagtatcatgaagggg 214  Q
     ||||||||||||| |||||||  ||||||| |||||| ||||||| |||||||||||||| |||||||||||||    
T  54859354 gtaaaatactgttaggagatacgtttggtgtagttgtgtaatacacatcaaggaactcatattatcatgaagggg 54859428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 39 - 217
Target Start/End: Original strand, 34128333 - 34128511
Alignment:
Q  39 agaattatgttacattaacaacataattctccatcattctcttactctaaatcatcaatcaattctctaatgcatgagttaattgttggaaccataaatc 138  Q
    |||||| |||| |||||||| ||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||| |||||||| |||||||||||    
T  34128333 agaattttgttgcattaacatcataattctccctcattctcttactctaaatcatccatcaattttctaatgcatgagtgaattgttgaaaccataaatc 34128432  T
Q  139 tataaaatactgttatgagatacacttggtgtggttgtgcaatacacgtcaaggaactcatagtatcatgaaggggatt 217  Q
    | |||||||  |||| ||||||   |||||||||||||||||||||| ||| | ||||||||||||| |||||| ||||    
T  34128433 tgtaaaatatggttaggagatatgtttggtgtggttgtgcaatacacctcatgaaactcatagtatcctgaaggagatt 34128511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 46 - 218
Target Start/End: Original strand, 3424802 - 3424975
Alignment:
Q  46 tgttacattaacaacataat-tctccatcattctcttactctaaatcatcaatcaattctctaatgcatgagttaattgttggaaccataaatctataaa 144  Q
    |||||| ||||||||||||  ||||| ||||||||||||||||||||||| || ||||||||||||||||||| | ||  ||||| ||||||||| ||||    
T  3424802 tgttactttaacaacataagatctccctcattctcttactctaaatcatccattaattctctaatgcatgagtgagttactggaaacataaatctgtaaa 3424901  T
Q  145 atactgttatgagatacacttggtgtggttgtgcaatacacgtcaaggaactcatagtatcatgaaggggattc 218  Q
    ||||||||| |||||||  |||||||||||||||||||||| |||| |||||||||||||| | |||| |||||    
T  3424902 atactgttaggagatacggttggtgtggttgtgcaatacacatcaatgaactcatagtatcctaaaggagattc 3424975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 39 - 153
Target Start/End: Original strand, 14643826 - 14643940
Alignment:
Q  39 agaattatgttacattaacaacataattctccatcattctcttactctaaatcatcaatcaattctctaatgcatgagttaattgttggaaccataaatc 138  Q
    |||||| |||||||| |||||||||||||| | | ||||||||||||||||||||| ||||||||||||||| ||  || ||||| ||||||||||||||    
T  14643826 agaattttgttacatcaacaacataattcttcctaattctcttactctaaatcatccatcaattctctaatgtataggtgaattgctggaaccataaatc 14643925  T
Q  139 tataaaatactgtta 153  Q
    | |||||||||||||    
T  14643926 tctaaaatactgtta 14643940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 125 - 218
Target Start/End: Original strand, 3415334 - 3415427
Alignment:
Q  125 tggaaccataaatctataaaatactgttatgagatacacttggtgtggttgtgcaatacacgtcaaggaactcatagtatcatgaaggggattc 218  Q
    ||||||||||||||| ||||||||| ||| |||||||  |||||||||||||||||||||| |||| |||||||||||||| |||||| |||||    
T  3415334 tggaaccataaatctgtaaaatactattaggagatacggttggtgtggttgtgcaatacacatcaatgaactcatagtatcctgaaggagattc 3415427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 158 - 218
Target Start/End: Original strand, 14646483 - 14646543
Alignment:
Q  158 atacacttggtgtggttgtgcaatacacgtcaaggaactcatagtatcatgaaggggattc 218  Q
    |||| |||||||||||| |||||||||| | ||||||||||||||||| | ||||||||||    
T  14646483 atacgcttggtgtggttctgcaatacacattaaggaactcatagtatcctaaaggggattc 14646543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 117
Target Start/End: Original strand, 34602060 - 34602119
Alignment:
Q  58 aacataattctccatcattctcttactctaaatcatcaatcaattctctaatgcatgagt 117  Q
    |||| |||||||| ||||||| ||||||||||||||| ||||||| ||| ||||||||||    
T  34602060 aacacaattctccctcattcttttactctaaatcatccatcaattttcttatgcatgagt 34602119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 89
Target Start/End: Original strand, 25618387 - 25618435
Alignment:
Q  41 aattatgttacattaacaacataattctccatcattctcttactctaaa 89  Q
    |||| |||| ||||||||| |||||||||| ||||||||||| ||||||    
T  25618387 aattttgttgcattaacaaaataattctccctcattctcttattctaaa 25618435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 142; Significance: 1e-74; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 17 - 218
Target Start/End: Complemental strand, 8458440 - 8458240
Alignment:
Q  17 acaactatacacaattttgtacagaattatgttacattaacaacataattctccatcattctcttactctaaatcatcaatcaattctctaatgcatgag 116  Q
    ||||||| ||||||||| | |||||||| ||||||||||||||||||||||| ||||||||| ||| ||||||||||| |||||||||||||||||||||    
T  8458440 acaactacacacaatttgg-acagaattttgttacattaacaacataattcttcatcattctattattctaaatcatccatcaattctctaatgcatgag 8458342  T
Q  117 ttaattgttggaaccataaatctataaaatactgttatgagatacacttggtgtggttgtgcaatacacgtcaaggaactcatagtatcatgaaggggat 216  Q
    | ||||| ||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  8458341 tgaattgctggaaccataaatctgtaaaatactgttaggagatacgcttggtgtggttgtgcaatacacgtcaaggaactcatagtatcctgaaggggat 8458242  T
Q  217 tc 218  Q
    ||    
T  8458241 tc 8458240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 17 - 218
Target Start/End: Complemental strand, 8464879 - 8464679
Alignment:
Q  17 acaactatacacaattttgtacagaattatgttacattaacaacataattctccatcattctcttactctaaatcatcaatcaattctctaatgcatgag 116  Q
    ||||||| ||||||||| | |||||||| ||||||||||||||||||||||| ||||||||| ||| ||||||||||| |||||||||||||||||||||    
T  8464879 acaactacacacaatttgg-acagaattttgttacattaacaacataattcttcatcattctattattctaaatcatccatcaattctctaatgcatgag 8464781  T
Q  117 ttaattgttggaaccataaatctataaaatactgttatgagatacacttggtgtggttgtgcaatacacgtcaaggaactcatagtatcatgaaggggat 216  Q
    | ||||| ||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  8464780 tgaattgctggaaccataaatctgtaaaatactgttaggagatacgcttggtgtggttgtgcaatacacgtcaaggaactcatagtatcctgaaggggat 8464681  T
Q  217 tc 218  Q
    ||    
T  8464680 tc 8464679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 17 - 217
Target Start/End: Original strand, 6858130 - 6858329
Alignment:
Q  17 acaactatacacaattttgtacagaattatgttacattaacaacataattctccatcattctcttactctaaatcatcaatcaattctctaatgcatgag 116  Q
    ||||||| ||||||||| | |||||||| ||||||||||||||||||||||| ||||||||| ||| ||||||||||| |||||||||||||||||||||    
T  6858130 acaactacacacaatttgg-acagaattttgttacattaacaacataattcttcatcattctattattctaaatcatccatcaattctctaatgcatgag 6858228  T
Q  117 ttaattgttggaaccataaatctataaaatactgttatgagatacacttggtgtggttgtgcaatacacgtcaaggaactcatagtatcatgaaggggat 216  Q
    | ||||| ||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  6858229 tgaattgctggaaccataaatctgtaaaatactgttaggagatacgcttggtgtggttgtgcaatacacgtcaaggaactcatagtatcttgaaggggat 6858328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 17 - 218
Target Start/End: Complemental strand, 4049936 - 4049736
Alignment:
Q  17 acaactatacacaattttgtacagaattatgttacattaacaacataattctccatcattctcttactctaaatcatcaatcaattctctaatgcatgag 116  Q
    ||||||| ||||||||| | |||||||| ||||||||||||||||||||||| || |||||| ||| ||||||||||| |||||||||||||||||||||    
T  4049936 acaactacacacaatttgg-acagaattttgttacattaacaacataattcttcaccattctattattctaaatcatccatcaattctctaatgcatgag 4049838  T
Q  117 ttaattgttggaaccataaatctataaaatactgttatgagatacacttggtgtggttgtgcaatacacgtcaaggaactcatagtatcatgaaggggat 216  Q
    | ||||| ||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  4049837 tgaattgctggaaccataaatctgtaaaatactgttaggagatacgcttggtgtggttgtgcaatacacgtcaaggaactcatagtatcctgaaggggat 4049738  T
Q  217 tc 218  Q
    ||    
T  4049737 tc 4049736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 37 - 218
Target Start/End: Original strand, 5458106 - 5458287
Alignment:
Q  37 acagaattatgttacattaacaacataattctccatcattctcttactctaaatcatcaatcaattctctaatgcatgagttaattgttggaaccataaa 136  Q
    |||||||| ||||||||||||||||||||||| ||||||||| ||| ||||||||||| |||||||||||||||||||||| ||||| ||||||||||||    
T  5458106 acagaattttgttacattaacaacataattcttcatcattctattattctaaatcatccatcaattctctaatgcatgagtgaattgctggaaccataaa 5458205  T
Q  137 tctataaaatactgttatgagatacacttggtgtggttgtgcaatacacgtcaaggaactcatagtatcatgaaggggattc 218  Q
    ||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  5458206 tctgtaaaatactgttaggagatacgcttggtgtggttgtgcaatacacgtcaaggaactcatagtatcctgaaggggattc 5458287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 37 - 218
Target Start/End: Original strand, 5481582 - 5481763
Alignment:
Q  37 acagaattatgttacattaacaacataattctccatcattctcttactctaaatcatcaatcaattctctaatgcatgagttaattgttggaaccataaa 136  Q
    |||||||| ||||||||||||||||||||||| ||||||||| ||| ||||||||||| |||||||||||||||||||||| ||||| ||||||||||||    
T  5481582 acagaattttgttacattaacaacataattcttcatcattctattattctaaatcatccatcaattctctaatgcatgagtgaattgctggaaccataaa 5481681  T
Q  137 tctataaaatactgttatgagatacacttggtgtggttgtgcaatacacgtcaaggaactcatagtatcatgaaggggattc 218  Q
    ||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  5481682 tctgtaaaatactgttaggagatacgcttggtgtggttgtgcaatacacgtcaaggaactcatagtatcctgaaggggattc 5481763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 17 - 218
Target Start/End: Original strand, 6853027 - 6853227
Alignment:
Q  17 acaactatacacaattttgtacagaattatgttacattaacaacataattctccatcattctcttactctaaatcatcaatcaattctctaatgcatgag 116  Q
    ||||||| ||||||||| | |||||||| ||||||||||||||||||||||| ||||||||| ||| ||||||||||| ||||||||||||||||| |||    
T  6853027 acaactacacacaatttgg-acagaattttgttacattaacaacataattcttcatcattctattattctaaatcatccatcaattctctaatgcacgag 6853125  T
Q  117 ttaattgttggaaccataaatctataaaatactgttatgagatacacttggtgtggttgtgcaatacacgtcaaggaactcatagtatcatgaaggggat 216  Q
    | ||||| ||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  6853126 tgaattgctggaaccataaatctgtaaaatactgttaggagatacgcttggtgtggttgtgcaatacacgtcaaggaactcatagtatcctgaaggggat 6853225  T
Q  217 tc 218  Q
    ||    
T  6853226 tc 6853227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 17 - 218
Target Start/End: Original strand, 10673013 - 10673213
Alignment:
Q  17 acaactatacacaattttgtacagaattatgttacattaacaacataattctccatcattctcttactctaaatcatcaatcaattctctaatgcatgag 116  Q
    ||||||| ||||||||| | |||||||| ||||||||||||||||||||||| || |||||| ||| ||||||||||| |||||||||||||||||||||    
T  10673013 acaactacacacaatttgg-acagaattttgttacattaacaacataattcttcaccattctattattctaaatcatccatcaattctctaatgcatgag 10673111  T
Q  117 ttaattgttggaaccataaatctataaaatactgttatgagatacacttggtgtggttgtgcaatacacgtcaaggaactcatagtatcatgaaggggat 216  Q
    | ||||| ||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  10673112 tgaattgctggaaccataaatctgtaaaatactgttaggagatacgcttggtgtggttgtgcaatacacgtcaaggaactcatagtatcctgaaggggat 10673211  T
Q  217 tc 218  Q
    ||    
T  10673212 tc 10673213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 17 - 218
Target Start/End: Original strand, 10678128 - 10678328
Alignment:
Q  17 acaactatacacaattttgtacagaattatgttacattaacaacataattctccatcattctcttactctaaatcatcaatcaattctctaatgcatgag 116  Q
    ||||||| ||||||||| | |||||||| ||||||||||||||||||||||| || |||||| ||| ||||||||||| |||||||||||||||||||||    
T  10678128 acaactacacacaatttgg-acagaattttgttacattaacaacataattcttcaccattctattattctaaatcatccatcaattctctaatgcatgag 10678226  T
Q  117 ttaattgttggaaccataaatctataaaatactgttatgagatacacttggtgtggttgtgcaatacacgtcaaggaactcatagtatcatgaaggggat 216  Q
    | ||||| ||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  10678227 tgaattgctggaaccataaatctgtaaaatactgttaggagatacgcttggtgtggttgtgcaatacacgtcaaggaactcatagtatcctgaaggggat 10678326  T
Q  217 tc 218  Q
    ||    
T  10678327 tc 10678328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 17 - 218
Target Start/End: Original strand, 31081582 - 31081782
Alignment:
Q  17 acaactatacacaattttgtacagaattatgttacattaacaacataattctccatcattctcttactctaaatcatcaatcaattctctaatgcatgag 116  Q
    ||||||| ||||||||| | |||||||| ||||||||||||||||||||||| || |||||| ||| ||||||||||| |||||||||||||||||||||    
T  31081582 acaactacacacaatttgg-acagaattttgttacattaacaacataattcttcaccattctattattctaaatcatccatcaattctctaatgcatgag 31081680  T
Q  117 ttaattgttggaaccataaatctataaaatactgttatgagatacacttggtgtggttgtgcaatacacgtcaaggaactcatagtatcatgaaggggat 216  Q
    | ||||||||||||||||||||| ||||||||||||| |||||||  |||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  31081681 tgaattgttggaaccataaatctgtaaaatactgttaggagatacgtttggtgtggttgtgcaatacacgtcaaggaactcatagtatcctgaaggggat 31081780  T
Q  217 tc 218  Q
    ||    
T  31081781 tc 31081782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 17 - 218
Target Start/End: Original strand, 1302320 - 1302520
Alignment:
Q  17 acaactatacacaattttgtacagaattatgttacattaacaacataattctccatcattctcttactctaaatcatcaatcaattctctaatgcatgag 116  Q
    ||||||| ||||||||| | ||| |||| ||||||||||||||||||||||| || |||||| ||| ||||||||||| |||||||||||||||||||||    
T  1302320 acaactacacacaatttgg-acaaaattttgttacattaacaacataattcttcaccattctattattctaaatcatccatcaattctctaatgcatgag 1302418  T
Q  117 ttaattgttggaaccataaatctataaaatactgttatgagatacacttggtgtggttgtgcaatacacgtcaaggaactcatagtatcatgaaggggat 216  Q
    | ||||| ||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  1302419 tgaattgctggaaccataaatctgtaaaatactgttaggagatacgcttggtgtggttgtgcaatacacgtcaaggaactcatagtatcctgaaggggat 1302518  T
Q  217 tc 218  Q
    ||    
T  1302519 tc 1302520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 17 - 218
Target Start/End: Original strand, 10591370 - 10591570
Alignment:
Q  17 acaactatacacaattttgtacagaattatgttacattaacaacataattctccatcattctcttactctaaatcatcaatcaattctctaatgcatgag 116  Q
    ||||||| ||||||||| | |||||||| ||||||||||||||||||||||  ||||||||| ||| ||||||||||| |||||||||||||||||||||    
T  10591370 acaactacacacaatttgg-acagaattttgttacattaacaacataattcctcatcattctattattctaaatcatccatcaattctctaatgcatgag 10591468  T
Q  117 ttaattgttggaaccataaatctataaaatactgttatgagatacacttggtgtggttgtgcaatacacgtcaaggaactcatagtatcatgaaggggat 216  Q
    | ||||| ||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||||    
T  10591469 tgaattgctggaaccataaatctgtaaaatactgttaggagatacgcttggtgtggttgtgcaatacacgtcaatgaactcatagtatcctgaaggggat 10591568  T
Q  217 tc 218  Q
    ||    
T  10591569 tc 10591570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 17 - 218
Target Start/End: Original strand, 31076477 - 31076677
Alignment:
Q  17 acaactatacacaattttgtacagaattatgttacattaacaacataattctccatcattctcttactctaaatcatcaatcaattctctaatgcatgag 116  Q
    ||||||| ||||||||| | |||||||| ||||||||||||||||||||||| || |||||| ||| ||||||||||| |||||||||||||||||||||    
T  31076477 acaactacacacaatttgg-acagaattttgttacattaacaacataattcttcaccattctattattctaaatcatccatcaattctctaatgcatgag 31076575  T
Q  117 ttaattgttggaaccataaatctataaaatactgttatgagatacacttggtgtggttgtgcaatacacgtcaaggaactcatagtatcatgaaggggat 216  Q
    | ||||| ||||||||||||||| ||||||||||||| |||||||  |||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  31076576 tgaattgctggaaccataaatctgtaaaatactgttaggagatacgtttggtgtggttgtgcaatacacgtcaaggaactcatagtatcctgaaggggat 31076675  T
Q  217 tc 218  Q
    ||    
T  31076676 tc 31076677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 17 - 218
Target Start/End: Original strand, 33702675 - 33702875
Alignment:
Q  17 acaactatacacaattttgtacagaattatgttacattaacaacataattctccatcattctcttactctaaatcatcaatcaattctctaatgcatgag 116  Q
    ||||||| ||||||||| | |||||||| ||||||||||||||||||||||| || |||||| ||| ||||||||||| |||||||||||||||||||||    
T  33702675 acaactacacacaatttgg-acagaattttgttacattaacaacataattcttcaccattctattattctaaatcatccatcaattctctaatgcatgag 33702773  T
Q  117 ttaattgttggaaccataaatctataaaatactgttatgagatacacttggtgtggttgtgcaatacacgtcaaggaactcatagtatcatgaaggggat 216  Q
    | ||||| ||||||||||||| | ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  33702774 tgaattgctggaaccataaatatgtaaaatactgttaggagatacgcttggtgtggttgtgcaatacacgtcaaggaactcatagtatcctgaaggggat 33702873  T
Q  217 tc 218  Q
    ||    
T  33702874 tc 33702875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 17 - 218
Target Start/End: Complemental strand, 4055070 - 4054870
Alignment:
Q  17 acaactatacacaattttgtacagaattatgttacattaacaacataattctccatcattctcttactctaaatcatcaatcaattctctaatgcatgag 116  Q
    ||||||| ||||||||| | | |||||| ||||||||||||||||||||||| || |||||| ||| ||||||||||| ||||||||| |||||||||||    
T  4055070 acaactacacacaatttgg-atagaattttgttacattaacaacataattcttcaccattctattattctaaatcatccatcaattctttaatgcatgag 4054972  T
Q  117 ttaattgttggaaccataaatctataaaatactgttatgagatacacttggtgtggttgtgcaatacacgtcaaggaactcatagtatcatgaaggggat 216  Q
    | ||||| ||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  4054971 tgaattgctggaaccataaatctgtaaaatactgttaggagatacgcttggtgtggttgtgcaatacacgttaaggaactcatagtatcctgaaggggat 4054872  T
Q  217 tc 218  Q
    ||    
T  4054871 tc 4054870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 17 - 210
Target Start/End: Complemental strand, 33703428 - 33703236
Alignment:
Q  17 acaactatacacaattttgtacagaattatgttacattaacaacataattctccatcattctcttactctaaatcatcaatcaattctctaatgcatgag 116  Q
    ||||||| ||||||||| | ||| |||| ||||||||||||||||||||||| || |||||| ||| ||||||||||| |||||||||||||||||||||    
T  33703428 acaactacacacaatttgg-acataattttgttacattaacaacataattcttcaccattctattattctaaatcatccatcaattctctaatgcatgag 33703330  T
Q  117 ttaattgttggaaccataaatctataaaatactgttatgagatacacttggtgtggttgtgcaatacacgtcaaggaactcatagtatcatgaa 210  Q
    | ||||| ||||||||||||||| ||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  33703329 tgaattgctggaaccataaatctgtaaaatactattaggagatacgcttggtgtggttgtgcaatacacgtcaaggaactcatagtatcctgaa 33703236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 46 - 218
Target Start/End: Complemental strand, 20891160 - 20890989
Alignment:
Q  46 tgttacattaacaacataattctccatcattctcttactctaaatcatcaatcaattctctaatgcatgagttaattgttggaaccataaatctataaaa 145  Q
    |||||||| |||||||||||||||| |||||| |||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  20891160 tgttacataaacaacataattctccctcattcgcttactctaaatcatccatcaattctctaatgcatgagtgaattgctggaaccataaatctataaaa 20891061  T
Q  146 tactgttatgagatacacttggtgtggttgtgcaatacacgtcaaggaactcatagtatcatgaaggggattc 218  Q
    |||||||| ||||||| ||| ||||| ||||| ||||||| ||||||||||||||||||| ||||||||||||    
T  20891060 tactgttaagagatacgctttgtgtgattgtgtaatacacatcaaggaactcatagtatc-tgaaggggattc 20890989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 39 - 218
Target Start/End: Complemental strand, 29827532 - 29827358
Alignment:
Q  39 agaattatgttacattaacaacataattctccatcattctcttactctaaatcatcaatcaattctctaatgcatgagttaattgttggaaccataaatc 138  Q
    |||||| |||| |||||| ||| ||||||||| ||||||||||||||||||||||  |||||||||||||||||||||| ||||| ||     |||||||    
T  29827532 agaattttgttgcattaataacctaattctccctcattctcttactctaaatcattcatcaattctctaatgcatgagtgaattgctg-----ataaatc 29827438  T
Q  139 tataaaatactgttatgagatacacttggtgtggttgtgcaatacacgtcaaggaactcatagtatcatgaaggggattc 218  Q
    | ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  29827437 tgtaaaatactgttaggagatacccttggtgtggttgtgcaatacacgtcaaggaactcatagtatcttgaaggggattc 29827358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 25 - 218
Target Start/End: Complemental strand, 49784618 - 49784423
Alignment:
Q  25 acacaattttgtacagaattatgttacattaacaacataattctccatcattctcttactctaaatcatcaatcaattctctaatgcatgagttaattgt 124  Q
    ||||||||||| |||||||| |||| ||||||||||||||||| || ||||||| ||||| ||||||||| |||||||||||||| ||||||| |||||     
T  49784618 acacaattttggacagaattttgttgcattaacaacataattccccctcattcttttactttaaatcatctatcaattctctaattcatgagtgaattgc 49784519  T
Q  125 tggaaccataaatctataaaatactgttatgagatacacttggtgtggttgtgcaatacacgtcaaggaactcata--gtatcatgaaggggattc 218  Q
    |||||||||||||||  |||||| ||||| ||||||   ||||| ||||||||||||||||||||| |||||||||  ||||| ||||||||||||    
T  49784518 tggaaccataaatctggaaaatattgttaggagatatgtttggtatggttgtgcaatacacgtcaaagaactcatagtgtatcttgaaggggattc 49784423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 40 - 218
Target Start/End: Original strand, 3187551 - 3187728
Alignment:
Q  40 gaattatgttacattaacaacataattctccatcattctcttactctaaatcatcaatcaattctctaatgcatgagttaattgttggaaccataaatct 139  Q
    ||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||| ||||| | |||||||||||||    
T  3187551 gaattttgtgacattaacaacataattctccctcattctcttactctaaatcatctatcaattctttaatgcatgagtgaattgctcgaaccataaatct 3187650  T
Q  140 ataaaatactgttatgagatacacttggtgtggttgtgcaatacacgtcaaggaactcatagtatcatgaaggggattc 218  Q
     ||||||| ||||| ||||||||||| ||||  ||||||||||||| ||||| ||||||| ||||| | ||||||||||    
T  3187651 gtaaaatattgttaagagatacactttgtgtaattgtgcaatacacatcaagaaactcat-gtatccttaaggggattc 3187728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 41 - 212
Target Start/End: Original strand, 18024246 - 18024416
Alignment:
Q  41 aattatgttacattaacaacataattctccatcattctcttactctaaatcatcaatcaattctctaatgcatgagttaattgttggaaccataaatcta 140  Q
    |||| ||||||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||||||||| | ||||||| |||| ||||||||     
T  18024246 aattttgttacattaacaacataattctccctcattctcttactctaaatcattcatcaattctctaatgcatgaatgaattgttagaacaataaatctg 18024345  T
Q  141 taaaatactgttatgagatacacttggtgtggttgtgcaatacacgtcaaggaactcatagtatcatgaagg 212  Q
    ||||||| |||||  |||||| ||||||||| ||||||||||||| | ||  ||||||||||||| ||||||    
T  18024346 taaaatattgttaacagatacgcttggtgtgattgtgcaatacacat-aaaaaactcatagtatcctgaagg 18024416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 17 - 151
Target Start/End: Original strand, 10584933 - 10585066
Alignment:
Q  17 acaactatacacaattttgtacagaattatgttacattaacaacataattctccatcattctcttactctaaatcatcaatcaattctctaatgcatgag 116  Q
    ||||||| ||||||||| | |||||||| ||||||||||||||||||||||  ||||||||| ||| ||||||||||| |||||||||||||||||||||    
T  10584933 acaactacacacaatttgg-acagaattttgttacattaacaacataattcctcatcattctattattctaaatcatccatcaattctctaatgcatgag 10585031  T
Q  117 ttaattgttggaaccataaatctataaaatactgt 151  Q
    | ||| | | ||||||||||||| |||||||||||    
T  10585032 tgaatagctagaaccataaatctgtaaaatactgt 10585066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 145 - 218
Target Start/End: Original strand, 10586384 - 10586457
Alignment:
Q  145 atactgttatgagatacacttggtgtggttgtgcaatacacgtcaaggaactcatagtatcatgaaggggattc 218  Q
    ||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  10586384 atactgttaggagatacgcttggcgtggttgtgcaatacacgtcaaggaactcatagtatcctgaaggggattc 10586457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 138; Significance: 3e-72; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 17 - 218
Target Start/End: Original strand, 14314986 - 14315186
Alignment:
Q  17 acaactatacacaattttgtacagaattatgttacattaacaacataattctccatcattctcttactctaaatcatcaatcaattctctaatgcatgag 116  Q
    ||||||| ||||||||| | |||||||| ||||||||||||||||||||||| || |||||| ||| ||||||||||| |||||||||||||||||||||    
T  14314986 acaactacacacaatttgg-acagaattttgttacattaacaacataattcttcaccattctattattctaaatcatccatcaattctctaatgcatgag 14315084  T
Q  117 ttaattgttggaaccataaatctataaaatactgttatgagatacacttggtgtggttgtgcaatacacgtcaaggaactcatagtatcatgaaggggat 216  Q
    | ||||| ||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  14315085 tgaattgctggaaccataaatctgtaaaatactgttaggagatacgcttggtgtggttgtgcaatacacgtcaaggaactcatagtatcctgaaggggat 14315184  T
Q  217 tc 218  Q
    ||    
T  14315185 tc 14315186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 17 - 218
Target Start/End: Original strand, 14318690 - 14318890
Alignment:
Q  17 acaactatacacaattttgtacagaattatgttacattaacaacataattctccatcattctcttactctaaatcatcaatcaattctctaatgcatgag 116  Q
    ||||||| ||||||||| | |||||||| ||||||||||||||||||||||| || |||||| ||| ||||||||||| |||||||||||||||||||||    
T  14318690 acaactacacacaatttgg-acagaattttgttacattaacaacataattcttcaccattctattattctaaatcatccatcaattctctaatgcatgag 14318788  T
Q  117 ttaattgttggaaccataaatctataaaatactgttatgagatacacttggtgtggttgtgcaatacacgtcaaggaactcatagtatcatgaaggggat 216  Q
    | ||||| ||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  14318789 tgaattgctggaaccataaatctgtaaaatactgttaggagatacgcttggtgtggttgtgcaatacacgtcaaggaactcatagtatcctgaaggggat 14318888  T
Q  217 tc 218  Q
    ||    
T  14318889 tc 14318890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 17 - 218
Target Start/End: Original strand, 26981951 - 26982151
Alignment:
Q  17 acaactatacacaattttgtacagaattatgttacattaacaacataattctccatcattctcttactctaaatcatcaatcaattctctaatgcatgag 116  Q
    ||||||| ||||||||| | |||||||| ||||||||||||||||||||||| || |||||| ||| ||||||||||| |||||||||||||||||||||    
T  26981951 acaactacacacaatttgg-acagaattttgttacattaacaacataattcttcaccattctattattctaaatcatccatcaattctctaatgcatgag 26982049  T
Q  117 ttaattgttggaaccataaatctataaaatactgttatgagatacacttggtgtggttgtgcaatacacgtcaaggaactcatagtatcatgaaggggat 216  Q
    | ||||| ||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  26982050 tgaattgctggaaccataaatctgtaaaatactgttaggagatacgcttggtgtggttgtgcaatacacgtcaaggaactcatagtatcctgaaggggat 26982149  T
Q  217 tc 218  Q
    ||    
T  26982150 tc 26982151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 17 - 218
Target Start/End: Original strand, 26987064 - 26987264
Alignment:
Q  17 acaactatacacaattttgtacagaattatgttacattaacaacataattctccatcattctcttactctaaatcatcaatcaattctctaatgcatgag 116  Q
    ||||||| ||||||||| | |||||||| ||||||||||||||||||||||| || |||||| ||| ||||||||||| |||||||||||||||||||||    
T  26987064 acaactacacacaatttgg-acagaattttgttacattaacaacataattcttcaccattctattattctaaatcatccatcaattctctaatgcatgag 26987162  T
Q  117 ttaattgttggaaccataaatctataaaatactgttatgagatacacttggtgtggttgtgcaatacacgtcaaggaactcatagtatcatgaaggggat 216  Q
    | ||||| ||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  26987163 tgaattgctggaaccataaatctgtaaaatactgttaggagatacgcttggtgtggttgtgcaatacacgtcaaggaactcatagtatcctgaaggggat 26987262  T
Q  217 tc 218  Q
    ||    
T  26987263 tc 26987264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 37 - 218
Target Start/End: Complemental strand, 34108339 - 34108158
Alignment:
Q  37 acagaattatgttacattaacaacataattctccatcattctcttactctaaatcatcaatcaattctctaatgcatgagttaattgttggaaccataaa 136  Q
    |||||||| ||||||||||||||||||||||| ||||||||| ||| ||||||||||| |||||||||||||||||||||| ||||| ||||||||||||    
T  34108339 acagaattttgttacattaacaacataattcttcatcattctattattctaaatcatccatcaattctctaatgcatgagtgaattgctggaaccataaa 34108240  T
Q  137 tctataaaatactgttatgagatacacttggtgtggttgtgcaatacacgtcaaggaactcatagtatcatgaaggggattc 218  Q
    ||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  34108239 tctgtaaaatactgttaggagatacgcttggtgtggttgtgcaatacacgtcaaggaactcatagtatcctgaaggggattc 34108158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 27 - 218
Target Start/End: Original strand, 10341041 - 10341232
Alignment:
Q  27 acaattttgtacagaattatgttacattaacaacataattctccatcattctcttactctaaatcatcaatcaattctctaatgcatgagttaattgttg 126  Q
    ||||||||| |||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||| ||||| ||    
T  10341041 acaattttggacagaattttgttgcattaacaacataattctccctcattctcttactctaaatcatccataaattctctaatgcatgagtgaattgctg 10341140  T
Q  127 gaaccataaatctataaaatactgttatgagatacacttggtgtggttgtgcaatacacgtcaaggaactcatagtatcatgaaggggattc 218  Q
    ||| ||||||||| ||||||| ||||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  10341141 gaatcataaatctgtaaaatattgttaggagatacgcttggtgtagttgtgcaatacacgtcaaggaactcatagtatcatgaaggggattc 10341232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 39 - 217
Target Start/End: Original strand, 18608724 - 18608902
Alignment:
Q  39 agaattatgttacattaacaacataattctccatcattctcttactctaaatcatcaatcaattctctaatgcatgagttaattgttggaaccataaatc 138  Q
    |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||  ||||| |||||||    
T  18608724 agaattttgttacattaacaacataattctccctcattctcttactctaaatcatccatcaattctctaatgcatgagttaattgacggaacgataaatc 18608823  T
Q  139 tataaaatactgttatgagatacacttggtgtggttgtgcaatacacgtcaaggaactcatagtatcatgaaggggatt 217  Q
    | ||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||| |||| |||||||||||    
T  18608824 tgtaaaatactgttaggagatacgcttggtgtggttgtgcaatacacatcaaggaactcatattatcctgaaggggatt 18608902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 25 - 218
Target Start/End: Original strand, 25953241 - 25953434
Alignment:
Q  25 acacaattttgtacagaattatgttacattaacaacataattctccatcattctcttactctaaatcatcaatcaattctctaatgcatgagttaattgt 124  Q
    ||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||| |||||     
T  25953241 acacaattttggacagaattttgttacattaacaacataattctccatcattctcatactctaaatcatccatcaattgtctaatgcatgagtgaattgc 25953340  T
Q  125 tggaaccataaatctataaaatactgttatgagatacacttggtgtggttgtgcaatacacgtcaaggaactcatagtatcatgaaggggattc 218  Q
    | ||||||||||| | || |||||||||| ||||||| || |||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  25953341 ttgaaccataaatatgtacaatactgttaggagatacgctaggtgtggttgtgcaatacacgtcaaggaactcatagtaccctgaaggggattc 25953434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 17 - 218
Target Start/End: Original strand, 43956924 - 43957124
Alignment:
Q  17 acaactatacacaattttgtacagaattatgttacattaacaacataattctccatcattctcttactctaaatcatcaatcaattctctaatgcatgag 116  Q
    ||||||| ||||||||| | ||| |||| |||| |||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||    
T  43956924 acaactacacacaatttgg-acataattttgttgcattaacaacataattcttcatcattctcttattctaaatcatccatcaattctctaatgcatgag 43957022  T
Q  117 ttaattgttggaaccataaatctataaaatactgttatgagatacacttggtgtggttgtgcaatacacgtcaaggaactcatagtatcatgaaggggat 216  Q
    | ||||| || |||||||||| | ||||| ||||||| ||||||| |||||||||||||||||||||||||||| |||||||||| ||| ||||||||||    
T  43957023 tgaattgctgaaaccataaatttgtaaaacactgttaggagatacgcttggtgtggttgtgcaatacacgtcaaagaactcatagaatcctgaaggggat 43957122  T
Q  217 tc 218  Q
    ||    
T  43957123 tc 43957124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 75 - 214
Target Start/End: Complemental strand, 18885136 - 18884997
Alignment:
Q  75 ttctcttactctaaatcatcaatcaattctctaatgcatgagttaattgttggaaccataaatctataaaatactgttatgagatacacttggtgtggtt 174  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||| |||||| ||||||  ||||||||| ||    
T  18885136 ttctcttactctaaatcatcaatcaattctctaatgcatgagtgaattgctggaaccataaatctgtaaaatcctgttaagagatatgcttggtgtgatt 18885037  T
Q  175 gtgcaatacacgtcaaggaactcatagtatcatgaagggg 214  Q
    ||||||||||| |||||||||| | |||||| ||||||||    
T  18885036 gtgcaatacacatcaaggaacttaaagtatcctgaagggg 18884997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 17 - 161
Target Start/End: Original strand, 18494251 - 18494394
Alignment:
Q  17 acaactatacacaattttgtacagaattatgttacattaacaacataattctccatcattctcttactctaaatcatcaatcaattctctaatgcatgag 116  Q
    ||||||| ||||||||| | | |||||| ||||||||||||||||||||||| || |||||| ||| ||||||||||| |||||||||||||||||||||    
T  18494251 acaactacacacaatttgg-atagaattttgttacattaacaacataattcttcaccattctattattctaaatcatccatcaattctctaatgcatgag 18494349  T
Q  117 ttaattgttggaaccataaatctataaaatactgttatgagatac 161  Q
    | ||||| ||||||||||||||| ||||||||||||| |||||||    
T  18494350 tgaattgctggaaccataaatctgtaaaatactgttaggagatac 18494394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 47 - 118
Target Start/End: Complemental strand, 1781939 - 1781868
Alignment:
Q  47 gttacattaacaacataattctccatcattctcttactctaaatcatcaatcaattctctaatgcatgagtt 118  Q
    |||||||||||||||||||| ||| |||||||||||||| |||||||| | |||||||||||| ||||||||    
T  1781939 gttacattaacaacataattatccctcattctcttactcaaaatcatccaccaattctctaattcatgagtt 1781868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 138; Significance: 3e-72; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 29 - 218
Target Start/End: Complemental strand, 2023082 - 2022893
Alignment:
Q  29 aattttgtacagaattatgttacattaacaacataattctccatcattctcttactctaaatcatcaatcaattctctaatgcatgagttaattgttgga 128  Q
    ||||||| |||||||| ||||||||||||||||||||||| || |||||||||| ||||||||||| |||||||||||||||||||||| ||||| ||||    
T  2023082 aattttggacagaattttgttacattaacaacataattcttcaccattctcttattctaaatcatccatcaattctctaatgcatgagtgaattgctgga 2022983  T
Q  129 accataaatctataaaatactgttatgagatacacttggtgtggttgtgcaatacacgtcaaggaactcatagtatcatgaaggggattc 218  Q
    ||||||||||| ||||||||||||| ||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  2022982 accataaatctgtaaaatactgttaggagatacgcttggtttggttgtgcaatacacgtcaaggaactcatagtatcctgaaggggattc 2022893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 17 - 218
Target Start/End: Original strand, 9877614 - 9877814
Alignment:
Q  17 acaactatacacaattttgtacagaattatgttacattaacaacataattctccatcattctcttactctaaatcatcaatcaattctctaatgcatgag 116  Q
    ||||||| ||||||||| | |||||||| ||||||||||||||||||||||| || |||||| ||| ||||||||||| |||||||||||||||||||||    
T  9877614 acaactacacacaatttgg-acagaattttgttacattaacaacataattcttcaccattctattattctaaatcatccatcaattctctaatgcatgag 9877712  T
Q  117 ttaattgttggaaccataaatctataaaatactgttatgagatacacttggtgtggttgtgcaatacacgtcaaggaactcatagtatcatgaaggggat 216  Q
    | ||||| ||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  9877713 tgaattgctggaaccataaatctgtaaaatactgttaggagatacgcttggtgtggttgtgcaatacacgtcaaggaactcatagtatcctgaaggggat 9877812  T
Q  217 tc 218  Q
    ||    
T  9877813 tc 9877814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 17 - 218
Target Start/End: Complemental strand, 39903974 - 39903774
Alignment:
Q  17 acaactatacacaattttgtacagaattatgttacattaacaacataattctccatcattctcttactctaaatcatcaatcaattctctaatgcatgag 116  Q
    ||||||| ||||||||| | |||||||| ||||||||||||||||||||||| || |||||| ||| ||||||||||| |||||||||||||||||||||    
T  39903974 acaactacacacaatttgg-acagaattttgttacattaacaacataattcttcaccattctattattctaaatcatccatcaattctctaatgcatgag 39903876  T
Q  117 ttaattgttggaaccataaatctataaaatactgttatgagatacacttggtgtggttgtgcaatacacgtcaaggaactcatagtatcatgaaggggat 216  Q
    | ||||| ||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  39903875 tgaattgctggaaccataaatctgtaaaatactgttaggagatacgcttggtgtggttgtgcaatacacgtcaaggaactcatagtatcctgaaggggat 39903776  T
Q  217 tc 218  Q
    ||    
T  39903775 tc 39903774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 17 - 218
Target Start/End: Complemental strand, 39909087 - 39908887
Alignment:
Q  17 acaactatacacaattttgtacagaattatgttacattaacaacataattctccatcattctcttactctaaatcatcaatcaattctctaatgcatgag 116  Q
    ||||||| ||||||||| | |||||||| ||||||||||||||||||||||| || |||||| ||| ||||||||||| |||||||||||||||||||||    
T  39909087 acaactacacacaatttgg-acagaattttgttacattaacaacataattcttcaccattctattattctaaatcatccatcaattctctaatgcatgag 39908989  T
Q  117 ttaattgttggaaccataaatctataaaatactgttatgagatacacttggtgtggttgtgcaatacacgtcaaggaactcatagtatcatgaaggggat 216  Q
    | ||||| ||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  39908988 tgaattgctggaaccataaatctgtaaaatactgttaggagatacgcttggtgtggttgtgcaatacacgtcaaggaactcatagtatcctgaaggggat 39908889  T
Q  217 tc 218  Q
    ||    
T  39908888 tc 39908887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 17 - 218
Target Start/End: Original strand, 9872499 - 9872699
Alignment:
Q  17 acaactatacacaattttgtacagaattatgttacattaacaacataattctccatcattctcttactctaaatcatcaatcaattctctaatgcatgag 116  Q
    ||||||| ||||||||| | |||||||| ||||||||||||||||||||||| ||  ||||| ||| ||||||||||| |||||||||||||||||||||    
T  9872499 acaactacacacaatttgg-acagaattttgttacattaacaacataattcttcacaattctattattctaaatcatccatcaattctctaatgcatgag 9872597  T
Q  117 ttaattgttggaaccataaatctataaaatactgttatgagatacacttggtgtggttgtgcaatacacgtcaaggaactcatagtatcatgaaggggat 216  Q
    | ||||| ||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  9872598 tgaattgctggaaccataaatctgtaaaatactgttaggagatacgcttggtgtggttgtgcaatacacgtcaaggaactcatagtatcctgaaggggat 9872697  T
Q  217 tc 218  Q
    ||    
T  9872698 tc 9872699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 17 - 218
Target Start/End: Original strand, 13556380 - 13556580
Alignment:
Q  17 acaactatacacaattttgtacagaattatgttacattaacaacataattctccatcattctcttactctaaatcatcaatcaattctctaatgcatgag 116  Q
    ||||||| ||||||||| | |||||| | ||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||    
T  13556380 acaactacacacaatttgg-acagaagtttgttacattaacaacataattcttcatcattctcttattctaaatcatccatcaattctctaatgcatgag 13556478  T
Q  117 ttaattgttggaaccataaatctataaaatactgttatgagatacacttggtgtggttgtgcaatacacgtcaaggaactcatagtatcatgaaggggat 216  Q
    | ||||| ||||||||||||| | |||||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  13556479 tgaattgctggaaccataaatatgtaaaatacggttaggagatacgcttggtgtggttgtgcaatacacgtcaaggaactcatagtatcctaaaggggat 13556578  T
Q  217 tc 218  Q
    ||    
T  13556579 tc 13556580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 39 - 218
Target Start/End: Original strand, 35368987 - 35369166
Alignment:
Q  39 agaattatgttacattaacaacataattctccatcattctcttactctaaatcatcaatcaattctctaatgcatgagttaattgttggaaccataaatc 138  Q
    |||||| |||| ||| || ||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||||    
T  35368987 agaattttgttgcatcaaaaacataattcttcctcattctcttactctaaatcatccatcaattctctaatgcatgagtgaattgttgtaaccataaatc 35369086  T
Q  139 tataaaatactgttatgagatacacttggtgtggttgtgcaatacacgtcaaggaactcatagtatcatgaaggggattc 218  Q
    | ||||||||| ||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||    
T  35369087 tgtaaaatactattaggagatacgcttggtgtggttgtgcaatacacatcaaggaactcatagtatcctgagggggattc 35369166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 32 - 210
Target Start/End: Complemental strand, 4555768 - 4555590
Alignment:
Q  32 tttgtacagaattatgttacattaacaacataattctccatcattctcttactctaaatcatcaatcaattctctaatgcatgagttaattgttggaacc 131  Q
    |||| ||| |||| ||||||||||||||||||||||| || |||||| ||||||||||||||| || ||||||||||||||||||| |||| |||| |||    
T  4555768 tttggacacaattttgttacattaacaacataattcttcaccattctattactctaaatcatccattaattctctaatgcatgagtgaattattggtacc 4555669  T
Q  132 ataaatctataaaatactgttatgagatacacttggtgtggttgtgcaatacacgtcaaggaactcatagtatcatgaa 210  Q
    |||||||| ||||||| ||||| || |||   |||||||| || |||||||||| |||| |||||| || |||| ||||    
T  4555668 ataaatctgtaaaataatgttaagaaatatgtttggtgtgattttgcaatacacatcaatgaactcgtaatatcttgaa 4555590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 53 - 218
Target Start/End: Complemental strand, 25184186 - 25184027
Alignment:
Q  53 ttaacaacataattctccatcattctcttactctaaatcatcaatcaattctctaatgcatgagttaattgttggaaccataaatctataaaatactgtt 152  Q
    ||||||||||| |||| || |||||||||||||||||||||| ||||||||||||||| || ||| ||||| | |||      |||| ||||||| ||||    
T  25184186 ttaacaacatatttcttcaccattctcttactctaaatcatccatcaattctctaatgtattagtgaattgctagaa------atctgtaaaatattgtt 25184093  T
Q  153 atgagatacacttggtgtggttgtgcaatacacgtcaaggaactcatagtatcatgaaggggattc 218  Q
      ||||||| |||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  25184092 tggagatacgcttggtatggttgtgcaataaacgtcaaggaactcatagtatcctgaaggggattc 25184027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 96 - 218
Target Start/End: Complemental strand, 43378488 - 43378366
Alignment:
Q  96 atcaattctctaatgcatgagttaattgttggaaccataaatctataaaatactgttatgagatacacttggtgtggttgtgcaatacacgtcaaggaac 195  Q
    ||||||||| |||||||| ||| ||||| ||||||||||||||| ||||||||||||| ||||||| |||  |||| |||||||||||||||||||||||    
T  43378488 atcaattctttaatgcattagtgaattgctggaaccataaatctgtaaaatactgttaggagatacgcttaatgtgattgtgcaatacacgtcaaggaac 43378389  T
Q  196 tcatagtatcatgaaggggattc 218  Q
    | ||| |||| ||||||||||||    
T  43378388 taataatatcctgaaggggattc 43378366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 41 - 112
Target Start/End: Original strand, 43540857 - 43540928
Alignment:
Q  41 aattatgttacattaacaacataattctccatcattctcttactctaaatcatcaatcaattctctaatgca 112  Q
    |||| |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||    
T  43540857 aattttgttacattaacaacatagttctccatcattctcttactctaaatcatctatcaattctctaatgca 43540928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 138; Significance: 3e-72; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 17 - 218
Target Start/End: Complemental strand, 3465602 - 3465402
Alignment:
Q  17 acaactatacacaattttgtacagaattatgttacattaacaacataattctccatcattctcttactctaaatcatcaatcaattctctaatgcatgag 116  Q
    ||||||| ||||||||| | |||||||| ||||||||||||||||||||||| || |||||| ||| ||||||||||| |||||||||||||||||||||    
T  3465602 acaactacacacaatttgg-acagaattttgttacattaacaacataattcttcaccattctattattctaaatcatccatcaattctctaatgcatgag 3465504  T
Q  117 ttaattgttggaaccataaatctataaaatactgttatgagatacacttggtgtggttgtgcaatacacgtcaaggaactcatagtatcatgaaggggat 216  Q
    | ||||| ||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  3465503 tgaattgctggaaccataaatctgtaaaatactgttaggagatacgcttggtgtggttgtgcaatacacgtcaaggaactcatagtatcctgaaggggat 3465404  T
Q  217 tc 218  Q
    ||    
T  3465403 tc 3465402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 17 - 218
Target Start/End: Complemental strand, 28574426 - 28574226
Alignment:
Q  17 acaactatacacaattttgtacagaattatgttacattaacaacataattctccatcattctcttactctaaatcatcaatcaattctctaatgcatgag 116  Q
    ||||||| ||||||||| | |||||||| ||||||||||||||||||||||| || |||||| ||| ||||||||||| |||||||||||||||||||||    
T  28574426 acaactacacacaatttgg-acagaattttgttacattaacaacataattcttcaccattctattattctaaatcatccatcaattctctaatgcatgag 28574328  T
Q  117 ttaattgttggaaccataaatctataaaatactgttatgagatacacttggtgtggttgtgcaatacacgtcaaggaactcatagtatcatgaaggggat 216  Q
    | ||||| ||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  28574327 tgaattgctggaaccataaatctgtaaaatactgttaggagatacgcttggtgtggttgtgcaatacacgtcaaggaactcatagtatcctgaaggggat 28574228  T
Q  217 tc 218  Q
    ||    
T  28574227 tc 28574226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 17 - 218
Target Start/End: Complemental strand, 28598438 - 28598238
Alignment:
Q  17 acaactatacacaattttgtacagaattatgttacattaacaacataattctccatcattctcttactctaaatcatcaatcaattctctaatgcatgag 116  Q
    ||||||| ||||||||| | |||||||| ||||||||||||||||||||||| || |||||| ||| ||||||||||| |||||||||||||||||||||    
T  28598438 acaactacacacaatttgg-acagaattttgttacattaacaacataattcttcaccattctattattctaaatcatccatcaattctctaatgcatgag 28598340  T
Q  117 ttaattgttggaaccataaatctataaaatactgttatgagatacacttggtgtggttgtgcaatacacgtcaaggaactcatagtatcatgaaggggat 216  Q
    | ||||| ||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  28598339 tgaattgctggaaccataaatctgtaaaatactgttaggagatacgcttggtgtggttgtgcaatacacgtcaaggaactcatagtatcctgaaggggat 28598240  T
Q  217 tc 218  Q
    ||    
T  28598239 tc 28598238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 17 - 204
Target Start/End: Complemental strand, 3468196 - 3468010
Alignment:
Q  17 acaactatacacaattttgtacagaattatgttacattaacaacataattctccatcattctcttactctaaatcatcaatcaattctctaatgcatgag 116  Q
    ||||||| ||||||||| | |||||||| ||||||||||||||||||||||| || |||||| ||| ||||||||||| |||||||||||||||||||||    
T  3468196 acaactacacacaatttgg-acagaattttgttacattaacaacataattcttcaccattctattattctaaatcatccatcaattctctaatgcatgag 3468098  T
Q  117 ttaattgttggaaccataaatctataaaatactgttatgagatacacttggtgtggttgtgcaatacacgtcaaggaactcatagtat 204  Q
    | ||||| ||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  3468097 tgaattgctggaaccataaatctgtaaaatactgttaggagatacgcttggtgtggttgtgcaatacacgtcaaggaactcatagtat 3468010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 25 - 218
Target Start/End: Complemental strand, 13654459 - 13654264
Alignment:
Q  25 acacaattttgtacagaattatgttacattaacaacataattctccatcattctcttactct--aaatcatcaatcaattctctaatgcatgagttaatt 122  Q
    ||||||||||| | |||||| |||| |||||||||||||||||||| |||||||||| ||||  |||||||| || ||||||||||||||||||| ||||    
T  13654459 acacaattttggatagaattttgttgcattaacaacataattctccctcattctcttgctctctaaatcatccattaattctctaatgcatgagtgaatt 13654360  T
Q  123 gttggaaccataaatctataaaatactgttatgagatacacttggtgtggttgtgcaatacacgtcaaggaactcatagtatcatgaaggggattc 218  Q
    | || |||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  13654359 gctgaaaccataaatctgtaaaatactgttaggagatacgcttggtgtggttgtgcaatacacgtcaaggaactcatagtatcctgaaggggattc 13654264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 29 - 205
Target Start/End: Original strand, 10186665 - 10186845
Alignment:
Q  29 aattttgtacagaattatgttacattaacaacataattctccatcattctcttactctaaatcatcaatcaattctctaatgcatgagttaattgttgga 128  Q
    ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||    
T  10186665 aattttggacagaattttgttacattaacaacataattctccatcattctcttactctaaatcatccatcaattctctaatgcatgagtgaattgctgga 10186764  T
Q  129 accataaatctataaaatac----tgttatgagatacacttggtgtggttgtgcaatacacgtcaaggaactcatagtatc 205  Q
    ||||||||||| |||||||     ||||| |||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  10186765 accataaatctgtaaaataaatattgttaggagatacgtttggtgtggttgtgcaatacacgtcaaggaactcatagtatc 10186845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 39 - 218
Target Start/End: Complemental strand, 1187935 - 1187757
Alignment:
Q  39 agaattatgttacattaacaacataattctccatcattctcttactctaaatcatcaatcaattctctaatgcatgagttaattgttggaaccataaatc 138  Q
    |||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||| |||||||||||| ||||| | ||||||||||||    
T  1187935 agaattttgttacattaacaacataaatctcc-tcattctcttactctaaatcatccatcaattctttaatgcatgagtgaattggtagaaccataaatc 1187837  T
Q  139 tataaaatactgttatgagatacacttggtgtggttgtgcaatacacgtcaaggaactcatagtatcatgaaggggattc 218  Q
    | ||||||| ||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  1187836 tgtaaaatattgttaggagatacgcttggtgtggttgtgcaatacacatcaaggaactcatagtatcatgaaggagattc 1187757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 25 - 218
Target Start/End: Complemental strand, 43358875 - 43358680
Alignment:
Q  25 acacaattttgtacagaattatgttacattaacaacataattctccatcattctcttactctaaatcatcaatcaattctctaatgcatgagttaattgt 124  Q
    ||||||||||| || ||||| ||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||| |||||     
T  43358875 acacaattttggactgaattttgttacattaacaacataattctccctcattctcttactctaaattatccatcaattctctaatgcatgagtgaattgc 43358776  T
Q  125 tggaaccataaatctataaaatactgttatgagatacacttggtgtggttgtgcaatacacgtcaaggaactc--atagtatcatgaaggggattc 218  Q
    ||||||||||||||| ||||| | ||||| ||||||   ||||||||||||||||||||||||||||||||||  |||||||  ||||||||||||    
T  43358775 tggaaccataaatctgtaaaaaattgttaggagatatgtttggtgtggttgtgcaatacacgtcaaggaactcatatagtattctgaaggggattc 43358680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 13 - 218
Target Start/End: Original strand, 44524093 - 44524294
Alignment:
Q  13 aacaacaactatacacaattttgtacagaattatgttacattaacaacataattctccatcattctcttactctaaatcatcaatcaattctctaatgca 112  Q
    ||||||||| | ||||||||| | |||||||  |||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  44524093 aacaacaacaacacacaattt-gaacagaatattgttgcattaacaacataattctccatcattctcttactttaaatcatccatcaattctctaatgca 44524191  T
Q  113 tgagttaattgttggaaccataaatctataaaatactgttatgagatacacttggtgtggttgtgcaatacacgtcaaggaactcatagtatcatgaagg 212  Q
    ||||| ||||| ||||||||||||||| ||||||||||||| ||||||| ||   |||||||||||||||||| ||||||||||||||||||   |||||    
T  44524192 tgagtgaattgctggaaccataaatctgtaaaatactgttaggagatacgct---tgtggttgtgcaatacacatcaaggaactcatagtattccgaagg 44524288  T
Q  213 ggattc 218  Q
    ||||||    
T  44524289 ggattc 44524294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 29 - 200
Target Start/End: Complemental strand, 19310942 - 19310771
Alignment:
Q  29 aattttgtacagaattatgttacattaacaacataattctccatcattctcttactctaaatcatcaatcaattctctaatgcatgagttaattgttgga 128  Q
    ||||||| ||||| || |||||||||||||| |||||||||| ||||||||||||| ||||||||| |||||||||||||||||||| | ||||| ||||    
T  19310942 aattttggacagagttttgttacattaacaatataattctccctcattctcttactataaatcatccatcaattctctaatgcatgaatgaattgctgga 19310843  T
Q  129 accataaatctataaaatactgttatgagatacacttggtgtggttgtgcaatacacgtcaaggaactcata 200  Q
    ||||||||||| ||||| ||| ||| ||||||  ||||||| ||||||||||||||||||||||||||||||    
T  19310842 accataaatctgtaaaacactattaggagatatgcttggtgcggttgtgcaatacacgtcaaggaactcata 19310771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 38 - 179
Target Start/End: Complemental strand, 35626281 - 35626140
Alignment:
Q  38 cagaattatgttacattaacaacataattctccatcattctcttactctaaatcatcaatcaattctctaatgcatgagttaattgttggaaccataaat 137  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  35626281 cagaattttgttacattaacaacataattctccctcattctcttactctaaatcatccatcaattctctaatgcatgagtgaattgttggaaccataaat 35626182  T
Q  138 ctataaaatactgttatgagatacacttggtgtggttgtgca 179  Q
    |||||||||||| ||| |||||||  | | ||||||||||||    
T  35626181 ctataaaatactattaggagatacgttcgatgtggttgtgca 35626140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 72 - 218
Target Start/End: Complemental strand, 16051281 - 16051135
Alignment:
Q  72 tcattctcttactctaaatcatcaatcaattctctaatgcatgagttaattgttggaaccataaatctataaaatactgttatgagatacacttggtgtg 171  Q
    ||||| ||||||| ||||||||| |||||||||||||||||||||| ||||| || |||||||||||| ||||||||||||| || |||| |||||||||    
T  16051281 tcattttcttactttaaatcatccatcaattctctaatgcatgagtgaattgctgaaaccataaatctgtaaaatactgttaggaaatacgcttggtgtg 16051182  T
Q  172 gttgtgcaatacacgtcaaggaactcatagtatcatgaaggggattc 218  Q
    | |||||||||||| ||||||||||||||||||| ||||||| ||||    
T  16051181 gctgtgcaatacacatcaaggaactcatagtatcttgaagggtattc 16051135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 40 - 149
Target Start/End: Original strand, 17414633 - 17414742
Alignment:
Q  40 gaattatgttacattaacaacataattctccatcattctcttactctaaatcatcaatcaattctctaatgcatgagttaattgttggaaccataaatct 139  Q
    ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||    
T  17414633 gaattttgttacattaacaacataattctccctcattctcttactctaaatcatccatcaattctctaatgcatgagtgaattgctggaaccataaatct 17414732  T
Q  140 ataaaatact 149  Q
      ||||||||    
T  17414733 ggaaaatact 17414742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 105 - 218
Target Start/End: Original strand, 48366213 - 48366326
Alignment:
Q  105 ctaatgcatgagttaattgttggaaccataaatctataaaatactgttatgagatacacttggtgtggttgtgcaatacacgtcaaggaactcatagtat 204  Q
    ||||||||| ||| ||||| ||||||||||||||| ||||||| ||||  ||||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  48366213 ctaatgcattagtgaattgctggaaccataaatctgtaaaatattgtttggagatacgcttggtgtggttgtgcaatacacgtcaaggacctcatagtat 48366312  T
Q  205 catgaaggggattc 218  Q
    | | ||||||||||    
T  48366313 cctcaaggggattc 48366326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 105 - 205
Target Start/End: Complemental strand, 29681632 - 29681532
Alignment:
Q  105 ctaatgcatgagttaattgttggaaccataaatctataaaatactgttatgagatacacttggtgtggttgtgcaatacacgtcaaggaactcatagtat 204  Q
    ||||||||| ||| ||||| ||||||||||||||| ||||||| ||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  29681632 ctaatgcattagtgaattgctggaaccataaatctgtaaaatattgttaggagatacgcttggtgtggttgtgcaatacacgtcaaggacctcatagtat 29681533  T
Q  205 c 205  Q
    |    
T  29681532 c 29681532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 39 - 136
Target Start/End: Original strand, 21431768 - 21431865
Alignment:
Q  39 agaattatgttacattaacaacataattctccatcattctcttactctaaatcatcaatcaattctctaatgcatgagttaattgttggaaccataaa 136  Q
    |||||| |||| |||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||| ||| ||||| ||||||||||||    
T  21431768 agaattttgttgcattaacaacataattctccctcattctcttaatctaaatcatccatcaattctctaatgcatcagtgaattgatggaaccataaa 21431865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 217
Target Start/End: Original strand, 3696403 - 3696578
Alignment:
Q  40 gaattatgttacattaacaacataattctccatca-ttctcttactctaaatcatcaatcaattctctaatgcatgagttaattgttggaaccataaatc 138  Q
    ||||| |||||||||||||||| |||||||   || ||||| | || ||||||||| |||||||||||   | |||| | ||||| ||||||||| |||     
T  3696403 gaattttgttacattaacaacacaattctcttccatttctcattctataaatcatccatcaattctctgcagaatgaatgaattgatggaaccat-aatt 3696501  T
Q  139 tataaaatactgttatgagatacacttggtgtggttgtgcaatacacgtcaaggaactcatagtatcatgaaggggatt 217  Q
    | |||||||| |||| |||||||  ||| |||| |||||  | |||| |||||||| |||||||||| |||||| ||||    
T  3696502 tgtaaaatacggttaagagatacttttgctgtgattgtg--aaacacatcaaggaattcatagtatcttgaaggagatt 3696578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 37 - 218
Target Start/End: Original strand, 2113 - 2294
Alignment:
Q  37 acagaattatgttacattaacaacataattctccatcattctcttactctaaatcatcaatcaattctctaatgcatgagttaattgttggaaccataaa 136  Q
    |||||||| | ||||||||||||||||||||| ||||||||| ||| ||||||||||| |||||||||||||||||||||| ||||| ||||||||||||    
T  2113 acagaattttattacattaacaacataattcttcatcattctattattctaaatcatccatcaattctctaatgcatgagtgaattgctggaaccataaa 2212  T
Q  137 tctataaaatactgttatgagatacacttggtgtggttgtgcaatacacgtcaaggaactcatagtatcatgaaggggattc 218  Q
    ||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  2213 tctgtaaaatactgttaggagatacgcttggtgtggttgtgcaatacacgtcaaggaactcatagtatcctgaaggggattc 2294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 25 - 218
Target Start/End: Complemental strand, 144220 - 144025
Alignment:
Q  25 acacaattttgtacagaattatgttacattaacaacataattctccatcattctcttactct--aaatcatcaatcaattctctaatgcatgagttaatt 122  Q
    ||||||||||| | |||||| |||| |||||||||||||||||||| |||||||||| ||||  |||||||| || ||||||||||||||||||| ||||    
T  144220 acacaattttggatagaattttgttgcattaacaacataattctccctcattctcttgctctctaaatcatccattaattctctaatgcatgagtgaatt 144121  T
Q  123 gttggaaccataaatctataaaatactgttatgagatacacttggtgtggttgtgcaatacacgtcaaggaactcatagtatcatgaaggggattc 218  Q
    | || |||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  144120 gctgaaaccataaatctgtaaaatactgttaggagatacgcttggtgtggttgtgcaatacacgtcaaggaactcatagtatcctgaaggggattc 144025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 67; Significance: 6e-30; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 39 - 153
Target Start/End: Complemental strand, 173466 - 173352
Alignment:
Q  39 agaattatgttacattaacaacataattctccatcattctcttactctaaatcatcaatcaattctctaatgcatgagttaattgttggaaccataaatc 138  Q
    |||||| |||||||| |||||||||||||| | | ||||||||||||||||||||| ||||||||||||||| ||  || ||||| ||||||||||||||    
T  173466 agaattttgttacatcaacaacataattcttcctaattctcttactctaaatcatccatcaattctctaatgtataggtgaattgctggaaccataaatc 173367  T
Q  139 tataaaatactgtta 153  Q
    | |||||||||||||    
T  173366 tctaaaatactgtta 173352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 158 - 218
Target Start/End: Complemental strand, 170807 - 170747
Alignment:
Q  158 atacacttggtgtggttgtgcaatacacgtcaaggaactcatagtatcatgaaggggattc 218  Q
    |||| |||||||||||| |||||||||| | ||||||||||||||||| | ||||||||||    
T  170807 atacgcttggtgtggttctgcaatacacattaaggaactcatagtatcctaaaggggattc 170747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0391 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0391
Description:

Target: scaffold0391; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 218
Target Start/End: Complemental strand, 16570 - 16536
Alignment:
Q  184 acgtcaaggaactcatagtatcatgaaggggattc 218  Q
    |||||||||||||||||||||| ||||||||||||    
T  16570 acgtcaaggaactcatagtatcctgaaggggattc 16536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University