View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3376_low_110 (Length: 227)
Name: NF3376_low_110
Description: NF3376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3376_low_110 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 4305973 - 4305747
Alignment:
| Q |
1 |
tcatcaaacacaattactttcccatcatacaagattgtcatttgtgcacatttaggctcttccttcttaatattagccttcattacactgtaataaaaca |
100 |
Q |
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| T |
4305973 |
tcatcaaacacaattactttcccatcatacaagattgtcatttgtgcacatttaggctcttccttcttaatattagccttcattacactgtaataaaaca |
4305874 |
T |
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| Q |
101 |
actttaacaattaacttaatgcaaattgaccatgttatatactactggtatgaattaatgaacttgttaagttaagtagaaaaaagaacatgtttgtacc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
4305873 |
actttaacaattaacttaatgcaaattgaccatgttatatactactggtatgaattaatgaacttgttaagttaagtagaaaaaagaacatgtttgcacc |
4305774 |
T |
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| Q |
201 |
tggagtttcccaaaataggaatctctt |
227 |
Q |
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| T |
4305773 |
tggagtttcccaaaataggaatctctt |
4305747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 4311330 - 4311172
Alignment:
| Q |
1 |
tcatcaaacacaattactttcccatcatacaagattgtcatttgtgcacatttaggctcttccttcttaatattagccttcattacactgtaata---aa |
97 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| || |
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| T |
4311330 |
tcatcaaacacaattactttcccatcataaaagattgtcatttgtgcacaactaggctcctccttcttaatattagccttcattacactgtaataattaa |
4311231 |
T |
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| Q |
98 |
acaactttaacaattaacttaatgcaaattgaccatgttatatactactggtatgaatt |
156 |
Q |
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| T |
4311230 |
acaacattaacaattaatttaatgcaaattgaccatgctatatacttctagtatgaatt |
4311172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 4300912 - 4300774
Alignment:
| Q |
1 |
tcatcaaacacaattactttcccatcatacaagattgtcatttgtgcacatttaggctcttccttcttaatattagccttcattacactgtaataaaaca |
100 |
Q |
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|||||||||||||||| |||||||||||| || ||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
4300912 |
tcatcaaacacaattattttcccatcataaaaaattgtcatttgggtacatttaggctcttccttgataatattagccttcattacactgtaataaaaca |
4300813 |
T |
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| Q |
101 |
actttaacaattaacttaatgcaaattgaccatgttata |
139 |
Q |
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| T |
4300812 |
acattaacaattaatttaatgcaaattgaccatgttata |
4300774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 4294375 - 4294311
Alignment:
| Q |
1 |
tcatcaaacacaattactttcccatcatacaagattgtcatttgtgcacatttaggctcttcctt |
65 |
Q |
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||||||||||||||||||||||||||||| || |||||||||||||||||| ||||||||||||| |
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| T |
4294375 |
tcatcaaacacaattactttcccatcataaaaaattgtcatttgtgcacatctaggctcttcctt |
4294311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 174 - 227
Target Start/End: Complemental strand, 4311130 - 4311077
Alignment:
| Q |
174 |
aagtagaaaaaagaacatgtttgtacctggagtttcccaaaataggaatctctt |
227 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
4311130 |
aagtagaaaaaagaacatgtatgtacctggagtttcccaaaataggaatctctt |
4311077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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