View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3376_low_111 (Length: 227)
Name: NF3376_low_111
Description: NF3376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3376_low_111 |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 26795485 - 26795279
Alignment:
| Q |
1 |
atcataaaaagtagatatattaattaagcctattttgatcttttagctcaaaccttcaatctgattttaaaattagtcttttttctctttctacaattcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
26795485 |
atcataaaaagtagatatattaattaagcctattttgatcttttagctcaaaccttcaatctgattttaaaattagtcttttttctctttctac--ttcc |
26795388 |
T |
|
| Q |
101 |
ctccctccggaaaaataataagtacaagagatactcatcctaatatgtctaatatttcaggttctgatgagttcaaatttccggctgttgcgagttccat |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
26795387 |
ctccctccggaaaaataataagtacaagagatactcatcctaatatgtctaatatttcaggttctgatgagttcaaatttccggctgttacgagttccat |
26795288 |
T |
|
| Q |
201 |
gaccacatt |
209 |
Q |
| |
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||||||||| |
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| T |
26795287 |
gaccacatt |
26795279 |
T |
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