View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3376_low_116 (Length: 222)
Name: NF3376_low_116
Description: NF3376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3376_low_116 |
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Alignment Details
Target: chr7 (Bit Score: 180; Significance: 2e-97; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 12 - 203
Target Start/End: Original strand, 31725864 - 31726055
Alignment:
| Q |
12 |
tgagatgaaggcagcacaagcacctagaagggagtgggagaaaaatgaagatcataaggttaaaaagaagcccacgtaagttttggaagatcaaaacaat |
111 |
Q |
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| T |
31725864 |
tgagaagaaggcagcacaagcacctagaagggagtgggagaaaaatgaagatcataaggttaaaaagaagcccacgtaagttttggaggatcaaaacaat |
31725963 |
T |
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| Q |
112 |
cccaaggcttagatgggtgattaaatcaccattgaaaatgttgacaaattttaagaatggttatatgaactttatgttaaaatctttgaaca |
203 |
Q |
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| T |
31725964 |
cccaaggcttagatgggtgattaaatcaccattgaaaatgttgacaaattttaagaagggttatatgaactttatgttaaaatctttgaaca |
31726055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 77 - 189
Target Start/End: Complemental strand, 31711319 - 31711207
Alignment:
| Q |
77 |
agaagcccacgtaagttttggaagatcaaaacaatcccaaggcttagatgggtgattaaatcaccattgaaaatgttgacaaattttaagaatggttata |
176 |
Q |
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| T |
31711319 |
agaagtccacgtagggattggaagatcagaacaagcccaaagctaagatggatgataagatcaccattgaaattgttgacaaaagtcaagaatacgtata |
31711220 |
T |
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| Q |
177 |
tgaactttatgtt |
189 |
Q |
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| T |
31711219 |
tgaactttatgtt |
31711207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 77 - 189
Target Start/End: Complemental strand, 31719420 - 31719308
Alignment:
| Q |
77 |
agaagcccacgtaagttttggaagatcaaaacaatcccaaggcttagatgggtgattaaatcaccattgaaaatgttgacaaattttaagaatggttata |
176 |
Q |
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| T |
31719420 |
agaagtccacgtagggattggaagatcagaacaagcccaaagctaagatggatgataagatcaccattgaaattgttgacaaaagtcaagaatacgtata |
31719321 |
T |
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| Q |
177 |
tgaactttatgtt |
189 |
Q |
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| T |
31719320 |
tgaactttatgtt |
31719308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 77 - 189
Target Start/End: Complemental strand, 31722025 - 31721913
Alignment:
| Q |
77 |
agaagcccacgtaagttttggaagatcaaaacaatcccaaggcttagatgggtgattaaatcaccattgaaaatgttgacaaattttaagaatggttata |
176 |
Q |
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||||| ||||||| | ||||||||||| ||||| ||||| ||| |||||| |||| | ||||||||||||| |||||||||| | |||||| |||| |
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| T |
31722025 |
agaagtccacgtagggattggaagatcagaacaagcccaaagctaagatggatgataagatcaccattgaaattgttgacaaaagtcaagaatacgtata |
31721926 |
T |
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| Q |
177 |
tgaactttatgtt |
189 |
Q |
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| T |
31721925 |
tgaactttatgtt |
31721913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 202
Target Start/End: Original strand, 46293763 - 46293793
Alignment:
| Q |
172 |
ttatatgaactttatgttaaaatctttgaac |
202 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
46293763 |
ttatatgaactttatgttaaaatctttgaac |
46293793 |
T |
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