View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3376_low_119 (Length: 214)
Name: NF3376_low_119
Description: NF3376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3376_low_119 |
 | |
|
| [»] scaffold0478 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0478 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: scaffold0478
Description:
Target: scaffold0478; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 22 - 198
Target Start/End: Original strand, 5813 - 5989
Alignment:
| Q |
22 |
tgtgttaaaatgagtaagtggcagtgtactagtcttactgcagggctcattggatatcagagttttatcaacggtcatagtgtgttttgtattcaaaatt |
121 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5813 |
tgtgttgaaatgagtaagtggcagtgtactagtcttattgcagggctcattggatatcagagttttatcaactgtcatagtgtgttttgtattcaaaatt |
5912 |
T |
|
| Q |
122 |
gcagattcaatcgaaacattttccacaacatcagagacttttgattgtgaaaccggattcaaacacaccatctcctt |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5913 |
gcagattcaatcgaaacattttccacaacatcagagacttttgattgtgaaaccggattcaaacacaccatctcctt |
5989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 22 - 198
Target Start/End: Complemental strand, 8033698 - 8033522
Alignment:
| Q |
22 |
tgtgttaaaatgagtaagtggcagtgtactagtcttactgcagggctcattggatatcagagttttatcaacggtcatagtgtgttttgtattcaaaatt |
121 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
8033698 |
tgtgttgaaatgagtaagtggcagtgtaccagtcttactgcagggctcattggatatcagagttttaccaacggtcatagtgtgttttgtattcaaaatt |
8033599 |
T |
|
| Q |
122 |
gcagattcaatcgaaacattttccacaacatcagagacttttgattgtgaaaccggattcaaacacaccatctcctt |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
8033598 |
gcagattcaatcgaaacattttccacaacatcagagacttttgattgtgaaaccggatacaaacacgccatctcctt |
8033522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 92
Target Start/End: Original strand, 21583883 - 21583957
Alignment:
| Q |
18 |
tttttgtgttaaaatgagtaagtggcagtgtactagtcttactgcagggctcattggatatcagagttttatcaa |
92 |
Q |
| |
|
|||||||||| | ||| ||| || ||||| ||| || ||||||||||||| ||||||||||| |||| ||||||| |
|
|
| T |
21583883 |
tttttgtgttgacatgggtaggtagcagtttaccagccttactgcagggcgcattggatatcggagtgttatcaa |
21583957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University