View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3376_low_12 (Length: 592)

Name: NF3376_low_12
Description: NF3376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3376_low_12
NF3376_low_12
[»] chr2 (5 HSPs)
chr2 (1-424)||(1614885-1615302)
chr2 (1-376)||(24455839-24456207)
chr2 (496-573)||(1615407-1615484)
chr2 (496-573)||(24455204-24455282)
chr2 (373-422)||(24455400-24455449)
[»] chr8 (4 HSPs)
chr8 (4-376)||(43228075-43228439)
chr8 (155-354)||(14839131-14839323)
chr8 (518-573)||(43227434-43227489)
chr8 (380-422)||(43227620-43227662)
[»] chr3 (2 HSPs)
chr3 (147-378)||(49234306-49234533)
chr3 (147-376)||(49233735-49233959)
[»] chr1 (3 HSPs)
chr1 (147-376)||(50862518-50862741)
chr1 (323-376)||(47723984-47724037)
chr1 (323-376)||(47730976-47731029)
[»] chr7 (1 HSPs)
chr7 (155-354)||(27962367-27962559)


Alignment Details
Target: chr2 (Bit Score: 360; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 424
Target Start/End: Original strand, 1614885 - 1615302
Alignment:
Q  1 ataagaaccaagagaacataagaaacaatcccaaagaaaacaaagcaaaatcaactacactaaagagccaaactacaacaacctattctgaaaaagcaac 100  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1614885 ataagaaccaagagaacataagaaacaatctcaaagaaaacaaagcaaaatcaactacactaaagagccaaactacaacaacctattctgaaaaagcaac 1614984  T
Q  101 aggagaacaatacaaacagccggttaaaaagacaatannnnnnnnngtaaattgagccaaaacacatgaagacaaaggcaaagagaagaaaataaaaccg 200  Q
    |||||||||||||||||||||||||||||||||||||         |||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  1614985 aggagaacaatacaaacagccggttaaaaagacaatatttttttt-gtaaattgagacaaaacgcatgaagacaaaggcaaagagaagaaaataaaaccg 1615083  T
Q  201 atacggtgcagtgcagctgaaacataaagagaaaaatcagaacacggggaagaaaaaatgccactacatagcagctgcaataccaaaacactgctgctgc 300  Q
    ||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1615084 atacggtgcagt-----tgaaacataaagagaaaaatcagaacacggggaagaaaaaatgccactacatagcagctgcaataccaaaacactgctgctgc 1615178  T
Q  301 actacattagtccacatgtagaaaaccagctctaaattatgcagaaaatcacctcgatctctctccaaactatgcatatatagtcattcttctttcaagc 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1615179 actacattagtccacatgtagaaaaccagctctaaattatgcagaaaatcacctcgatctctctccaaactatgcatatatagtcattcttctttcaagc 1615278  T
Q  401 ttcacaatgttgaatttgcctacc 424  Q
    ||||||||||||||||||||||||    
T  1615279 ttcacaatgttgaatttgcctacc 1615302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 24456207 - 24455839
Alignment:
Q  1 ataagaaccaagagaacataagaaacaatcccaaagaaaacaaagcaaaatcaactacactaaagagccaaactacaacaacctattctgaaaaagcaac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||  |||    
T  24456207 ataagaaccaagagaacataagaaacaatcccaaagaaaacaaagcaaaatcaactacactatagagccaaactacaacaacctattcagaaaaactaac 24456108  T
Q  101 aggagaacaatacaaacagccggttaaaaagacaatannnnnnnnngtaaattgagccaaaacaca-tgaagacaaaggcaaagagaagaaaataaaacc 199  Q
    ||||||||||||||||||||| |||||||||||||||         ||||||||||||||||||||  ||| ||||||||||||||||||||||||||||    
T  24456107 aggagaacaatacaaacagccagttaaaaagacaata-atttttttgtaaattgagccaaaacacacagaaaacaaaggcaaagagaagaaaataaaacc 24456009  T
Q  200 gatacggtgcagtgcagctgaaacataaagagaaaaatcagaacacggggaagaaaaaatgccactacatagcagctgcaataccaaaacactgctgctg 299  Q
    |||| |     ||||||||| | |  | |||||||||||||||||  |||| |||||||| ||||||| |||||||||||||||||||||||||||| ||    
T  24456008 gatatg-----gtgcagctggacc--acagagaaaaatcagaacatagggaggaaaaaataccactacgtagcagctgcaataccaaaacactgctgttg 24455916  T
Q  300 cactacattagtccacatgtagaaaaccagctctaaattatgcagaaaatcacctcgatctctctccaaactatgca 376  Q
    || ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  24455915 cattacattagtccacatgccgaaaaccagctctaaattatgcagaaaatcacctcgatctcgctccaaattatgca 24455839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 496 - 573
Target Start/End: Original strand, 1615407 - 1615484
Alignment:
Q  496 ctgtccaattttcatcttctcgtcaaagcatcactcttcatcatcttcagcgtatgaattcaaacctagccacaccac 573  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1615407 ctgtccaattttcatcttctcatcaaagcatcactcttcatcatcttcagcgtatgaattcaaacctagccacaccac 1615484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 496 - 573
Target Start/End: Complemental strand, 24455282 - 24455204
Alignment:
Q  496 ctgtccaattttcatcttctcgtcaaagcatcactcttcatcatcttcagcgtatgaa-ttcaaacctagccacaccac 573  Q
    |||||||| |||||||||||| | |||||||||||||||||||||||||||||||||| |||||| |||||||||||||    
T  24455282 ctgtccaaatttcatcttctcataaaagcatcactcttcatcatcttcagcgtatgaatttcaaatctagccacaccac 24455204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 373 - 422
Target Start/End: Complemental strand, 24455449 - 24455400
Alignment:
Q  373 tgcatatatagtcattcttctttcaagcttcacaatgttgaatttgccta 422  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  24455449 tgcatatatagtcattcttctttcaagcttcacaatattgaatttgccta 24455400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 182; Significance: 4e-98; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 4 - 376
Target Start/End: Complemental strand, 43228439 - 43228075
Alignment:
Q  4 agaaccaagagaacataagaaacaatcccaaagaaaacaaagcaaaatcaactacactaaagagccaaactacaacaacctattctgaaaaagcaacagg 103  Q
    ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  43228439 agaaccaagagaacataagaaactatcccaaagaaaacaaaccaaaatcaactacactaaagagccaaactacaacaacctattctaaaaaagcaacagg 43228340  T
Q  104 agaacaatacaaacagccggttaaaaagacaatannnnnnnnngtaaattgagccaaaacacatgaagacaaaggcaaagagaagaaaataaaaccgata 203  Q
    ||| |||||||||||||| |||||||||||| ||         |||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||    
T  43228339 agaccaatacaaacagccagttaaaaagacagta-ttttttttgtaaattgagccaaaacacacgaagaccaaggcaaagagaagaaagtaaaaccgata 43228241  T
Q  204 cggtgcagtgcagctgaaacataaagagaaaaatcagaacacggggaagaaaaaatgccactacatagcagctgcaataccaaaacactgctgctgcact 303  Q
     |      |||||||| |||  | ||||| |||||||||| | |||| ||||||| ||||| |  ||| ||||||| | | |||||||||||||||||||    
T  43228240 tg-----ttgcagctggaac--acagagacaaatcagaacgcagggaggaaaaaacgccaccaggtagaagctgcagtgcaaaaacactgctgctgcact 43228148  T
Q  304 acattagtccacatgtagaaaaccagctctaaattatgcagaaaatcacctcgatctctctccaaactatgca 376  Q
    |||||||||||||||  |||| ||| |||||||||||||||||||||||| ||||||| ||||||| ||||||    
T  43228147 acattagtccacatgccgaaagccaactctaaattatgcagaaaatcaccccgatctcactccaaattatgca 43228075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 155 - 354
Target Start/End: Complemental strand, 14839323 - 14839131
Alignment:
Q  155 agccaaaacacatgaagacaaaggcaaagagaagaaaataaaaccgatacggtgcagtgcagctgaaacataaagagaaaaatcagaacacggggaagaa 254  Q
    ||||||||||| |||||||| ||| |||||||||||||||||||||||| | |||||     ||| |||| |  |||| ||||||||||   |||| |||    
T  14839323 agccaaaacacttgaagacagaggaaaagagaagaaaataaaaccgatatgttgcag-----ctggaacaca--gagacaaatcagaacgtagggaggaa 14839231  T
Q  255 aaaatgccactacatagcagctgcaataccaaaacactgctgctgcactacattagtccacatgtagaaaaccagctctaaattatgcagaaaatcacct 354  Q
    ||||  || |||| |||||| |||| ||||||||||| || |||||| |||||||||||| |||  |||||||||||||||| ||||  |||||| ||||    
T  14839230 aaaactccgctacgtagcaggtgcagtaccaaaacaccgcggctgcattacattagtccatatgctgaaaaccagctctaaactatgtcgaaaattacct 14839131  T

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Target: chr8; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 518 - 573
Target Start/End: Complemental strand, 43227489 - 43227434
Alignment:
Q  518 tcaaagcatcactcttcatcatcttcagcgtatgaattcaaacctagccacaccac 573  Q
    ||||||||||||||||  ||||||||| ||||||||||||||||||||||||||||    
T  43227489 tcaaagcatcactctttgtcatcttcaacgtatgaattcaaacctagccacaccac 43227434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 380 - 422
Target Start/End: Complemental strand, 43227662 - 43227620
Alignment:
Q  380 atagtcattcttctttcaagcttcacaatgttgaatttgccta 422  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  43227662 atagtcattcttctttcaagcttcacaatgttgaatttgccta 43227620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 129; Significance: 2e-66; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 147 - 378
Target Start/End: Original strand, 49234306 - 49234533
Alignment:
Q  147 gtaaattgagccaaaacacatgaagacaaaggcaaagagaagaaaataaaaccgatacggtgcagtgcagctgaaacataaagagaaaaatcagaacacg 246  Q
    ||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||| |      |||||||| |||| ||| ||| ||||||||||||     
T  49234306 gtaaattgagccaaaacacatgaagaccaaggcaaagagaagaaattaaaaccaatatg-----ttgcagctggaacacaaatagacaaatcagaacaca 49234400  T
Q  247 gggaagaaaaaatgccactacatagcagctgcaataccaaaacactgctgctgcactacattagtccacatgtagaaaaccagctctaaattatgc-aga 345  Q
    |||| |||||||||||||||  ||||||||||| ||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||| |||    
T  49234401 gggaggaaaaaatgccactatgtagcagctgcagtaccaaaacactgctgctgcattacattagcccacatgcagaaaaccagctctaaattatgcaaga 49234500  T
Q  346 aaatcacctcgatctctctccaaactatgcata 378  Q
    |||||||||||||||| ||||||| ||||||||    
T  49234501 aaatcacctcgatctcgctccaaattatgcata 49234533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 147 - 376
Target Start/End: Original strand, 49233735 - 49233959
Alignment:
Q  147 gtaaattgagccaaaacacatgaagacaaaggcaaagagaagaaaataaaaccgatacggtgcagtgcagctgaaacataaagagaaaaatcagaacacg 246  Q
    ||||||| ||||||||||||||||||| ||||||||||||||||| ||||||| ||| |      |||||||| |||| ||| ||| |||||| |||||     
T  49233735 gtaaattaagccaaaacacatgaagaccaaggcaaagagaagaaattaaaaccaatatg-----ttgcagctggaacacaaatagacaaatcaaaacaca 49233829  T
Q  247 gggaagaaaaaatgccactacatagcagctgcaataccaaaacactgctgctgcactacattagtccacatgtagaaaaccagctctaaattatgcagaa 346  Q
    |||| |||| ||||||||||  ||||||||| | ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  49233830 gggaggaaagaatgccactatgtagcagctgtagtaccaaaacactgctgctgcactacattagtccacatgccgaaaaccagctctaaattatgcagaa 49233929  T
Q  347 aatcacctcgatctctctccaaactatgca 376  Q
    ||||||||||||||| ||||||| ||||||    
T  49233930 aatcacctcgatctcgctccaaattatgca 49233959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 98; Significance: 6e-48; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 147 - 376
Target Start/End: Complemental strand, 50862741 - 50862518
Alignment:
Q  147 gtaaattgagccaaaacacatgaagacaaaggcaaagagaagaaaataaaaccgatacggtgcagtgcagctgaaacataaagagaaaaatcagaacacg 246  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||| ||||||  ||| | ||||||     || |||| ||| ||| ||||||||||||     
T  50862741 gtaaattga-ccaaaacacatgaagaccaaggcaaagagaagaaattaaaactaatatgttgcagt-----tggaacacaaatagacaaatcagaacaca 50862648  T
Q  247 gggaagaaaaaatgccactacatagcagctgcaataccaaaacactgctgctgcactacattagtccacatgtagaaaaccagctctaaattatgcagaa 346  Q
    |||| ||||||| |||||||  || |||||||| ||||||| || ||||| | |||||||||||||||||||  ||||| ||||||||||||||||||||    
T  50862647 gggaggaaaaaacgccactatgtaccagctgcagtaccaaagcagtgctgatacactacattagtccacatgccgaaaatcagctctaaattatgcagaa 50862548  T
Q  347 aatcacctcgatctctctccaaactatgca 376  Q
    ||||||||||||||| ||||||| ||||||    
T  50862547 aatcacctcgatctcgctccaaattatgca 50862518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 323 - 376
Target Start/End: Complemental strand, 47724037 - 47723984
Alignment:
Q  323 aaaccagctctaaattatgcagaaaatcacctcgatctctctccaaactatgca 376  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||    
T  47724037 aaaccagctctaaatgatgcagaaaatcacctcgatctcgctccaaattatgca 47723984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 323 - 376
Target Start/End: Complemental strand, 47731029 - 47730976
Alignment:
Q  323 aaaccagctctaaattatgcagaaaatcacctcgatctctctccaaactatgca 376  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||    
T  47731029 aaaccagctctaaatgatgcagaaaatcacctcgatctcgctccaaattatgca 47730976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 155 - 354
Target Start/End: Original strand, 27962367 - 27962559
Alignment:
Q  155 agccaaaacacatgaagacaaaggcaaagagaagaaaataaaaccgatacggtgcagtgcagctgaaacataaagagaaaaatcagaacacggggaagaa 254  Q
    ||||||||||| |||||||| ||| |||||||||||||||||||||||| | |||||     ||| |||| |  |||| ||||||||||   |||| |||    
T  27962367 agccaaaacacttgaagacagaggaaaagagaagaaaataaaaccgatatgttgcag-----ctggaacaca--gagacaaatcagaacgtagggaggaa 27962459  T
Q  255 aaaatgccactacatagcagctgcaataccaaaacactgctgctgcactacattagtccacatgtagaaaaccagctctaaattatgcagaaaatcacct 354  Q
    ||||  || |||| |||||| |||| ||||||||||| || |||||| |||||||||||| |||  |||||||||||||||| ||||  |||||| ||||    
T  27962460 aaaactccgctacgtagcaggtgcagtaccaaaacaccgcggctgcattacattagtccatatgctgaaaaccagctctaaactatgtcgaaaattacct 27962559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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